| MIR3616 | microRNA 3616 | 20
| 3.408 |
| SUMO1P1 | SUMO1 pseudogene 1 | 20q13.2
| 2.947 |
| ZNF217 | zinc finger protein 217 | 20q13.2
| 2.737 |
| BMP7 | bone morphogenetic protein 7 | 20q13
| 2.517 |
| BRIP1 | BRCA1 interacting protein C-terminal helicase 1 | 17q23.2
| 2.178 |
| BCAS4 | breast carcinoma amplified sequence 4 | 20q13
| 2.147 |
| MIR8071-1 | microRNA 8071-1 | 14
| 2.118 |
| MIR8071-2 | microRNA 8071-2 | 14
| 2.118 |
| CYP24A1 | cytochrome P450, family 24, subfamily A, polypeptide 1 | 20q13.2-q13.3
| 2.004 |
| MIR4756 | microRNA 4756 | 20
| 1.955 |
| BCAS1 | breast carcinoma amplified sequence 1 | 20q13.2
| 1.897 |
| PFDN4 | prefoldin subunit 4 | 20q13.2
| 1.854 |
| NACA2 | nascent polypeptide-associated complex alpha subunit 2 | 17q23.3
| 1.796 |
| PARD6B | par-6 family cell polarity regulator beta | 20q13.13
| 1.718 |
| FAM65C | family with sequence similarity 65, member C | 20q13.13
| 1.684 |
| LOC100129697 | NA | NA
| 1.629 |
| LOC101927770 | NA | NA
| 1.612 |
| CBFA2T3 | core-binding factor, runt domain, alpha subunit 2; translocated to, 3 | 16q24
| 1.555 |
| GPR37L1 | G protein-coupled receptor 37 like 1 | 1q32
| 1.473 |
| SBNO2 | strawberry notch homolog 2 (Drosophila) | 19p13.3
| 1.418 |
| TBC1D3P1-DHX40P1 | TBC1D3P1-DHX40P1 readthrough transcribed pseudogene | 17q23.1
| 1.347 |
| BMP7-AS1 | BMP7 antisense RNA 1 | 20q13.31
| 1.328 |
| TANC2 | tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 | 17q23.3
| 1.241 |
| MIR5093 | microRNA 5093 | 16
| 1.208 |
| LINC00311 | long intergenic non-protein coding RNA 311 | 16q24.1
| 1.199 |
| PPM1D | protein phosphatase, Mg2+/Mn2+ dependent, 1D | 17q23.3
| 1.187 |
| GREB1 | growth regulation by estrogen in breast cancer 1 | 2p25.1
| 1.17 |
| MIR4429 | microRNA 4429 | 2
| 1.11 |
| ZMYND8 | zinc finger, MYND-type containing 8 | 20q13.12
| 1.108 |
| NAT9 | N-acetyltransferase 9 (GCN5-related, putative) | 17q25.2
| 1.09 |
| TMEM104 | transmembrane protein 104 | 17q25.1
| 1.087 |
| RTEL1 | regulator of telomere elongation helicase 1 | 20q13.3
| 1.054 |
| RTEL1-TNFRSF6B | RTEL1-TNFRSF6B readthrough (NMD candidate) | 20q13.33
| 1.054 |
| MYOG | myogenin (myogenic factor 4) | 1q31-q41
| 1.054 |
| CTAG2 | cancer/testis antigen 2 | Xq28
| 1.052 |
| RNA28S5 | RNA, 28S ribosomal 5 | 22p12
| 1.048 |
| IL24 | interleukin 24 | 1q32
| 1.044 |
| TRIM37 | tripartite motif containing 37 | 17q
| 1.04 |
| RARA | retinoic acid receptor, alpha | 17q21.1
| 1.04 |
| MIR3615 | microRNA 3615 | 17
| 1.039 |
| SLC9A3R1 | solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1 | 17q25.1
| 1.039 |
| LINC00969 | long intergenic non-protein coding RNA 969 | 3q29
| 1.017 |
| TFF1 | trefoil factor 1 | 21q22.3
| 1.007 |
| BAGE | B melanoma antigen | 21p11.1 not on reference assembly
| 1.003 |
| BAGE4 | B melanoma antigen family, member 4 | 21p11.1
| 1.003 |
| BAGE3 | B melanoma antigen family, member 3 | 21p11.2
| 1.003 |
| BAGE2 | B melanoma antigen family, member 2 | 21p11.2
| 1.003 |
| BAGE5 | B melanoma antigen family, member 5 | 13cen
| 1.003 |
| RNA5-8S5 | RNA, 5.8S ribosomal 5 | 22p12
| 0.995 |
| SULF2 | sulfatase 2 | 20q13.12
| 0.965 |
| REXO1L2P | REX1, RNA exonuclease 1 homolog-like 2, pseudogene | 8q21.2
| 0.96 |
| LOC100507091 | NA | NA
| 0.94 |
| NCOA3 | nuclear receptor coactivator 3 | 20q12
| 0.938 |
| C17orf82 | chromosome 17 open reading frame 82 | 17q23.2
| 0.935 |
| TBX4 | T-box 4 | 17q21-q22
| 0.914 |
| MIR6775 | microRNA 6775 | 16
| 0.909 |
| STMN3 | stathmin-like 3 | 20q13.3
| 0.895 |
| RNA18S5 | RNA, 18S ribosomal 5 | 22p12
| 0.884 |
| XBP1 | X-box binding protein 1 | 22q12.1
| 0.876 |
| MIR4737 | microRNA 4737 | 17
| 0.866 |
| MIR3687-1 | microRNA 3687-1 | 21
| 0.857 |
| MIR3687-2 | microRNA 3687-2 | 21
| 0.857 |
| MIR3648-1 | microRNA 3648-1 | 21
| 0.844 |
| MIR3648-2 | microRNA 3648-2 | 21
| 0.844 |
| CCDC88C | coiled-coil domain containing 88C | 14q32.12
| 0.823 |
| RNFT1 | ring finger protein, transmembrane 1 | 17q23.2
| 0.823 |
| ARL8A | ADP-ribosylation factor-like 8A | 1q32.1
| 0.819 |
| LOC101927755 | NA | NA
| 0.818 |
| LOC100507651 | NA | NA
| 0.81 |
| PRICKLE2-AS2 | PRICKLE2 antisense RNA 2 | 3p14.1
| 0.809 |
| TTC28 | tetratricopeptide repeat domain 28 | 22q12.1
| 0.807 |
| MIR6724-1 | microRNA 6724-1 | 21
| 0.806 |
| MIR6724-2 | microRNA 6724-2 | 21
| 0.806 |
| MIR6724-3 | microRNA 6724-3 | 21
| 0.806 |
| MIR6724-4 | microRNA 6724-4 | 21
| 0.806 |
| ADAMTS9-AS2 | ADAMTS9 antisense RNA 2 | 3p14.1
| 0.803 |
| TH | tyrosine hydroxylase | 11p15.5
| 0.803 |
| CD22 | CD22 molecule | 19q13.1
| 0.789 |
| MIR4686 | microRNA 4686 | 11
| 0.789 |
| ELK2AP | ELK2A, member of ETS oncogene family, pseudogene | 14q32.33
| 0.784 |
| FOXN1 | forkhead box N1 | 17q11.2
| 0.782 |
| CRKL | v-crk avian sarcoma virus CT10 oncogene homolog-like | 22q11.21
| 0.78 |
| SPINK4 | serine peptidase inhibitor, Kazal type 4 | 9p13.3
| 0.765 |
| LOC100131496 | NA | NA
| 0.759 |
| ADAMTS9 | ADAM metallopeptidase with thrombospondin type 1 motif, 9 | 3p14.1
| 0.749 |
| TP53TG3B | TP53 target 3B | 16p11.2
| 0.733 |
| TP53TG3 | TP53 target 3 | 16p11.2
| 0.733 |
| TP53TG3C | TP53 target 3C | 16p11.2
| 0.733 |
| MIR663A | microRNA 663a | 20p11.1
| 0.723 |
| TPD52L1 | tumor protein D52-like 1 | 6q22-q23
| 0.694 |
| LOC284412 | NA | NA
| 0.672 |
| MCF2L-AS1 | MCF2L antisense RNA 1 | 13q34
| 0.666 |
| MCF2L | MCF.2 cell line derived transforming sequence-like | 13q34
| 0.666 |
| SCARNA20 | small Cajal body-specific RNA 20 | 17q23.2
| 0.66 |
| RAB37 | RAB37, member RAS oncogene family | 17q25.2
| 0.658 |
| MIR570 | microRNA 570 | 3
| 0.657 |
| LOC102724467 | NA | NA
| 0.654 |
| ADAMTS9-AS1 | ADAMTS9 antisense RNA 1 | 3p14.1
| 0.647 |
| PVT1 | Pvt1 oncogene (non-protein coding) | 8q24
| 0.645 |
| PPFIA4 | protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 | 1q32.1
| 0.644 |
| MPPED1 | metallophosphoesterase domain containing 1 | 22q13.2
| 0.643 |
| USP31 | ubiquitin specific peptidase 31 | 16p12.3
| 0.632 |
| TBX2 | T-box 2 | 17q23.2
| 0.624 |
| MIR1204 | microRNA 1204 | 8q24.21
| 0.623 |
| FAM223A | family with sequence similarity 223, member A (non-protein coding) | Xq28
| 0.619 |
| FAM223B | family with sequence similarity 223, member B (non-protein coding) | Xq28
| 0.619 |
| TBX2-AS1 | TBX2 antisense RNA 1 | 17q23.2
| 0.618 |
| TMPRSS3 | transmembrane protease, serine 3 | 21q22.3
| 0.614 |
| PTP4A2 | protein tyrosine phosphatase type IVA, member 2 | 1p35
| 0.611 |
| INS | insulin | 11p15.5
| 0.607 |
| INS-IGF2 | INS-IGF2 readthrough | 11p15.5
| 0.607 |
| FMN1 | formin 1 | 15q13.3
| 0.606 |
| MIR8078 | microRNA 8078 | 18
| 0.606 |
| LINC01588 | long intergenic non-protein coding RNA 1588 | 14q22.1
| 0.606 |
| EFCAB10 | EF-hand calcium binding domain 10 | 7q22.2
| 0.605 |
| DOK7 | docking protein 7 | 4p16.2
| 0.605 |
| NAB2 | NGFI-A binding protein 2 (EGR1 binding protein 2) | 12q13.3
| 0.604 |
| RPS6KL1 | ribosomal protein S6 kinase-like 1 | 14q24.2
| 0.604 |
| DMRT2 | doublesex and mab-3 related transcription factor 2 | 9p24.3
| 0.603 |
| CASP7 | caspase 7, apoptosis-related cysteine peptidase | 10q25
| 0.603 |
| ADAMTSL5 | ADAMTS-like 5 | 19p13.3
| 0.603 |
| LINC00963 | long intergenic non-protein coding RNA 963 | 9q34.11
| 0.602 |
| PPM1E | protein phosphatase, Mg2+/Mn2+ dependent, 1E | 17q24.2
| 0.602 |
| LINC00565 | long intergenic non-protein coding RNA 565 | 13q34
| 0.602 |
| XXYLT1-AS1 | XXYLT1 antisense RNA 1 | 3q29
| 0.601 |
| UNC119 | unc-119 lipid binding chaperone | 17q11.2
| 0.601 |
| APOA1-AS | APOA1 antisense RNA | 11q23.3
| 0.601 |
| CARM1 | coactivator-associated arginine methyltransferase 1 | 19p13.2
| 0.599 |
| RNU2-1 | RNA, U2 small nuclear 1 | 17q12
| 0.599 |
| HMGCLL1 | 3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 | 6p12.1
| 0.599 |
| BLVRB | biliverdin reductase B | 19q13.1-q13.2
| 0.597 |
| DECR1 | 2,4-dienoyl CoA reductase 1, mitochondrial | 8q21.3
| 0.597 |
| RNF223 | ring finger protein 223 | 1p36.33
| 0.595 |
| LAMC1 | laminin, gamma 1 (formerly LAMB2) | 1q31
| 0.593 |
| CD276 | CD276 molecule | 15q23-q24
| 0.592 |
| VCAN | versican | 5q14.2-q14.3
| 0.592 |
| CFAP99 | cilia and flagella associated protein 99 | 4p16.3
| 0.592 |
| SLC16A10 | solute carrier family 16 (aromatic amino acid transporter), member 10 | 6q21-q22
| 0.591 |
| PLA2G6 | phospholipase A2, group VI (cytosolic, calcium-independent) | 22q13.1
| 0.591 |
| CTSD | cathepsin D | 11p15.5
| 0.591 |
| PA2G4P4 | proliferation-associated 2G4 pseudogene 4 | 3q25.31
| 0.59 |
| LOC101927523 | NA | NA
| 0.588 |
| PDZK1 | PDZ domain containing 1 | 1q21
| 0.586 |
| DNAJC5B | DnaJ (Hsp40) homolog, subfamily C, member 5 beta | 8q13.1
| 0.585 |
| ZFYVE28 | zinc finger, FYVE domain containing 28 | 4p16.3
| 0.584 |
| SPTBN4 | spectrin, beta, non-erythrocytic 4 | 19q13.13
| 0.583 |
| FKBP4 | FK506 binding protein 4, 59kDa | 12p13.33
| 0.58 |
| ZNF169 | zinc finger protein 169 | 9q22.32
| 0.58 |
| SNAR-A3 | small ILF3/NF90-associated RNA A3 | 19q13.33
| 0.579 |
| SNAR-A4 | small ILF3/NF90-associated RNA A4 | 19q13.33
| 0.579 |
| SNAR-A5 | small ILF3/NF90-associated RNA A5 | 19q13.33
| 0.579 |
| SNAR-A7 | small ILF3/NF90-associated RNA A7 | 19q13.33
| 0.579 |
| SNAR-A11 | small ILF3/NF90-associated RNA A11 | 19q13.33
| 0.579 |
| SNAR-A9 | small ILF3/NF90-associated RNA A9 | 19q13.33
| 0.579 |
| SNAR-A6 | small ILF3/NF90-associated RNA A6 | 19q13.33
| 0.579 |
| SNAR-A8 | small ILF3/NF90-associated RNA A8 | 19q13.33
| 0.579 |
| SNAR-A10 | small ILF3/NF90-associated RNA A10 | 19q13.33
| 0.579 |
| SNAR-A14 | small ILF3/NF90-associated RNA A14 | 19q13.33
| 0.579 |
| NMNAT2 | nicotinamide nucleotide adenylyltransferase 2 | 1q25
| 0.578 |
| FOXK1 | forkhead box K1 | 7p22
| 0.577 |
| APOA1 | apolipoprotein A-I | 11q23-q24
| 0.577 |
| FRAS1 | Fraser extracellular matrix complex subunit 1 | 4q21.21
| 0.573 |
| SGCA | sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein) | 17q21
| 0.571 |
| LOC101928105 | NA | NA
| 0.571 |
| MIR4477B | microRNA 4477b | 9
| 0.57 |
| MIR6723 | microRNA 6723 | 1
| 0.569 |
| CUEDC1 | CUE domain containing 1 | 17q23.2
| 0.568 |
| MIR4477A | microRNA 4477a | 9
| 0.568 |
| MTRNR2L1 | MT-RNR2-like 1 | 17p11.2
| 0.567 |
| KDM4B | lysine (K)-specific demethylase 4B | 19p13.3
| 0.564 |
| KCNK6 | potassium channel, two pore domain subfamily K, member 6 | 19q13.1
| 0.561 |
| NAV2 | neuron navigator 2 | 11p15.1
| 0.559 |
| SEMA3B-AS1 | SEMA3B antisense RNA 1 (head to head) | 3p21.31
| 0.558 |
| LINC01522 | long intergenic non-protein coding RNA 1522 | 20q13.13
| 0.558 |
| FAM102A | family with sequence similarity 102, member A | 9q34.11
| 0.556 |
| ASB2 | ankyrin repeat and SOCS box containing 2 | 14q31-q32
| 0.556 |
| DGKZ | diacylglycerol kinase, zeta | 11p11.2
| 0.555 |
| SEMA3B | sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B | 3p21.3
| 0.554 |
| LINC00160 | long intergenic non-protein coding RNA 160 | 21q22.12
| 0.554 |
| LINC01230 | long intergenic non-protein coding RNA 1230 | 9p24.3
| 0.552 |
| LOC100507412 | NA | NA
| 0.547 |
| VASN | vasorin | 16p13.3
| 0.546 |
| TFF2 | trefoil factor 2 | 21q22.3
| 0.543 |
| MIR6792 | microRNA 6792 | 19
| 0.542 |
| RAPGEFL1 | Rap guanine nucleotide exchange factor (GEF)-like 1 | 17q21.2
| 0.54 |
| CYP2B7P | cytochrome P450, family 2, subfamily B, polypeptide 7, pseudogene | 19q13.2
| 0.54 |
| LINC00960 | long intergenic non-protein coding RNA 960 | 3p12.3
| 0.538 |
| MIR4692 | microRNA 4692 | 11
| 0.536 |
| FAIM3 | NA | NA
| 0.535 |
| ROCK1P1 | Rho-associated, coiled-coil containing protein kinase 1 pseudogene 1 | 18p11.32
| 0.533 |
| CTBP1 | C-terminal binding protein 1 | 4p16
| 0.527 |
| NFIC | nuclear factor I/C (CCAAT-binding transcription factor) | 19p13.3
| 0.526 |
| HAAO | 3-hydroxyanthranilate 3,4-dioxygenase | 2p
| 0.526 |
| MIR5707 | microRNA 5707 | 7
| 0.524 |
| CTBP1-AS2 | CTBP1 antisense RNA 2 (head to head) | 4p16.3
| 0.52 |
| CNOT3 | CCR4-NOT transcription complex, subunit 3 | 19q13.4
| 0.518 |
| MYCNOS | MYCN opposite strand | 2p24.1
| 0.517 |
| CAP2 | CAP, adenylate cyclase-associated protein, 2 (yeast) | 6p22.3
| 0.516 |
| DUX4 | double homeobox 4 | 4q35.2
| 0.515 |
| LINC00886 | long intergenic non-protein coding RNA 886 | 3q25.31
| 0.51 |