| ZIC1 | Zic family member 1 | 3q24
| 3.426 |
| FOXG1-AS1 | FOXG1 antisense RNA 1 (head to head) | 14q12
| 3.408 |
| FOXG1 | forkhead box G1 | 14q12
| 3.356 |
| ZIC2 | Zic family member 2 | 13q32
| 3.352 |
| IGF2BP1 | insulin-like growth factor 2 mRNA binding protein 1 | 17q21.32
| 3.338 |
| ZIC4 | Zic family member 4 | 3q24
| 3.32 |
| LOC440982 | NA | NA
| 3.296 |
| ZIC5 | Zic family member 5 | 13q32.2
| 3.254 |
| FOXD3-AS1 | FOXD3 antisense RNA 1 (head to head) | 1p31.3
| 3.145 |
| FOXD3 | forkhead box D3 | 1p31.3
| 3.134 |
| MIR6068 | microRNA 6068 | 1p31.3
| 3.041 |
| LINC01551 | long intergenic non-protein coding RNA 1551 | 14q11.2
| 3.026 |
| LINC00466 | long intergenic non-protein coding RNA 466 | 1p31.3
| 3.016 |
| PRAC1 | prostate cancer susceptibility candidate 1 | 17q21
| 2.931 |
| PRAC2 | prostate cancer susceptibility candidate 2 | 17q21.3
| 2.925 |
| HOTAIR | HOX transcript antisense RNA | 12q13.13
| 2.924 |
| MIR3185 | microRNA 3185 | 17
| 2.919 |
| CBX8 | chromobox homolog 8 | 17q25.3
| 2.867 |
| HOXC11 | homeobox C11 | 12q13.13
| 2.856 |
| HOXB13 | homeobox B13 | 17q21.32
| 2.839 |
| SLITRK3 | SLIT and NTRK-like family, member 3 | 3q26.1
| 2.672 |
| PROK2 | prokineticin 2 | 3p21.1
| 2.648 |
| HOXC10 | homeobox C10 | 12q13.13
| 2.642 |
| HOXC-AS3 | HOXC cluster antisense RNA 3 | 12q13.13
| 2.604 |
| LOC101927437 | NA | NA
| 2.523 |
| HOXC12 | homeobox C12 | 12q13.13
| 2.451 |
| LBX1 | ladybird homeobox 1 | 10q24.32
| 2.393 |
| LINC00554 | long intergenic non-protein coding RNA 554 | 13q32.3
| 2.359 |
| LBX1-AS1 | LBX1 antisense RNA 1 (head to head) | 10q24.32
| 2.355 |
| PRDM13 | PR domain containing 13 | 6q16.2
| 2.319 |
| MKX | mohawk homeobox | 10p12.1
| 2.317 |
| LHX6 | LIM homeobox 6 | 9q33.2
| 2.242 |
| MKX-AS1 | MKX antisense RNA 1 | 10p12.1
| 2.206 |
| DBX1 | developing brain homeobox 1 | 11p15.1
| 2.192 |
| IKZF3 | IKAROS family zinc finger 3 (Aiolos) | 17q11.2
| 2.135 |
| LINC01322 | long intergenic non-protein coding RNA 1322 | 3q26.1
| 2.106 |
| C5orf66 | chromosome 5 open reading frame 66 | 5q31.1
| 2.084 |
| PITX1 | paired-like homeodomain 1 | 5q31.1
| 2.08 |
| LHX9 | LIM homeobox 9 | 1q31.1
| 2.073 |
| CBX2 | chromobox homolog 2 | 17q25.3
| 2.053 |
| MIR196A2 | microRNA 196a-2 | 12q13.13
| 2.031 |
| FOXD4 | forkhead box D4 | 9p24.3
| 2.03 |
| C5orf66-AS1 | C5orf66 antisense RNA 1 | 5q31.1
| 2.009 |
| IGF1R | insulin-like growth factor 1 receptor | 15q26.3
| 2.001 |
| CITED1 | Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 | Xq13.1
| 1.942 |
| ZPBP2 | zona pellucida binding protein 2 | 17q21.1
| 1.933 |
| IRAIN | IGF1R antisense imprinted non-protein coding RNA | 15q26.3
| 1.882 |
| HEY2 | hes-related family bHLH transcription factor with YRPW motif 2 | 6q
| 1.858 |
| BMP4 | bone morphogenetic protein 4 | 14q22-q23
| 1.795 |
| SLC30A3 | solute carrier family 30 (zinc transporter), member 3 | 2p23.3
| 1.783 |
| CDKN2A | cyclin-dependent kinase inhibitor 2A | 9p21
| 1.766 |
| PREX2 | phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 | 8q13.1
| 1.757 |
| GFI1 | growth factor independent 1 transcription repressor | 1p22
| 1.749 |
| MECOM | MDS1 and EVI1 complex locus | 3q26.2
| 1.747 |
| CYP26B1 | cytochrome P450, family 26, subfamily B, polypeptide 1 | 2p12
| 1.739 |
| LOC101927248 | NA | NA
| 1.739 |
| HPSE2 | heparanase 2 (inactive) | 10q23-q24
| 1.73 |
| NHLH2 | nescient helix loop helix 2 | 1p12-p11
| 1.725 |
| HOXD12 | homeobox D12 | 2q31.1
| 1.721 |
| GRIA4 | glutamate receptor, ionotropic, AMPA 4 | 11q22
| 1.718 |
| CD70 | CD70 molecule | 19p13
| 1.716 |
| DUSP4 | dual specificity phosphatase 4 | 8p12-p11
| 1.715 |
| BMI1 | BMI1 proto-oncogene, polycomb ring finger | 10p13
| 1.712 |
| NR5A2 | nuclear receptor subfamily 5, group A, member 2 | 1q32.11
| 1.709 |
| MBP | myelin basic protein | 18q23
| 1.703 |
| ISL2 | ISL LIM homeobox 2 | 15q24.3
| 1.702 |
| NKX2-4 | NK2 homeobox 4 | 20p11.22
| 1.695 |
| DMRTA2 | DMRT-like family A2 | 1p33
| 1.694 |
| FOXCUT | FOXC1 upstream transcript (non-protein coding) | 6p25.3
| 1.691 |
| FOXE1 | forkhead box E1 | 9q22
| 1.688 |
| SLC32A1 | solute carrier family 32 (GABA vesicular transporter), member 1 | 20q11
| 1.686 |
| HOXD11 | homeobox D11 | 2q31.1
| 1.669 |
| HOXC-AS2 | HOXC cluster antisense RNA 2 | 12q13.13
| 1.659 |
| OTX1 | orthodenticle homeobox 1 | 2p15
| 1.646 |
| ZDBF2 | zinc finger, DBF-type containing 2 | 2q33.3
| 1.634 |
| MIR2277 | microRNA 2277 | 5
| 1.634 |
| GIP | gastric inhibitory polypeptide | 17q21.3-q22
| 1.629 |
| TSEN34 | TSEN34 tRNA splicing endonuclease subunit | 19q13.4
| 1.625 |
| SOX21 | SRY (sex determining region Y)-box 21 | 13q32.1
| 1.619 |
| TLX3 | T-cell leukemia homeobox 3 | 5q35.1
| 1.616 |
| MBOAT7 | membrane bound O-acyltransferase domain containing 7 | 19q13.4
| 1.612 |
| FOXC1 | forkhead box C1 | 6p25
| 1.612 |
| SOX21-AS1 | SOX21 antisense RNA 1 (head to head) | 13q32.1
| 1.608 |
| RNU4-2 | RNA, U4 small nuclear 2 | 12q24.31
| 1.599 |
| LHX1 | LIM homeobox 1 | 17q12
| 1.595 |
| HOXD13 | homeobox D13 | 2q31.1
| 1.579 |
| LHX2 | LIM homeobox 2 | 9q33.3
| 1.567 |
| RNU4-1 | RNA, U4 small nuclear 1 | 12q24.31
| 1.559 |
| TFAP2A-AS1 | TFAP2A antisense RNA 1 | 6p24.3
| 1.549 |
| GATA4 | GATA binding protein 4 | 8p23.1-p22
| 1.546 |
| TFAP2A | transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) | 6p24.3
| 1.546 |
| SIX1 | SIX homeobox 1 | 14q23.1
| 1.541 |
| EMX1 | empty spiracles homeobox 1 | 2p13.2
| 1.526 |
| DDX25 | DEAD (Asp-Glu-Ala-Asp) box helicase 25 | 11q24
| 1.525 |
| WNT16 | wingless-type MMTV integration site family, member 16 | 7q31
| 1.525 |
| C1orf53 | chromosome 1 open reading frame 53 | 1q31.3
| 1.519 |
| LOC100132215 | NA | NA
| 1.503 |
| SPAG6 | sperm associated antigen 6 | 10p12.31
| 1.499 |
| LINC01397 | long intergenic non-protein coding RNA 1397 | 1p13.3
| 1.498 |
| PUS3 | pseudouridylate synthase 3 | 11q24.2
| 1.493 |
| DLX1 | distal-less homeobox 1 | 2q31.1
| 1.475 |
| CCNC | cyclin C | 6q21
| 1.47 |
| HOXC-AS1 | HOXC cluster antisense RNA 1 | 12q13.13
| 1.459 |
| LINC00461 | long intergenic non-protein coding RNA 461 | 5q14.3
| 1.458 |
| HOXC9 | homeobox C9 | 12q13.13
| 1.454 |
| FOXD4L1 | forkhead box D4-like 1 | 2q14.1
| 1.452 |
| RAX | retina and anterior neural fold homeobox | 18q21.31
| 1.441 |
| DHDDS | dehydrodolichyl diphosphate synthase subunit | 1p35.3
| 1.437 |
| HMX3 | H6 family homeobox 3 | 10q26.13
| 1.426 |
| MIR5580 | microRNA 5580 | 14
| 1.421 |
| RPS9 | ribosomal protein S9 | 19q13.4
| 1.42 |
| COMMD3-BMI1 | COMMD3-BMI1 readthrough | 10p12.2
| 1.417 |
| COMMD3 | COMM domain containing 3 | 10p12.2
| 1.417 |
| VSNL1 | visinin-like 1 | 2p24.3
| 1.41 |
| LOC728613 | NA | NA
| 1.409 |
| SIRT4 | sirtuin 4 | 12q24.31
| 1.396 |
| NKX2-5 | NK2 homeobox 5 | 5q34
| 1.392 |
| HMX2 | H6 family homeobox 2 | 10q26.13
| 1.39 |
| EVX2 | even-skipped homeobox 2 | 2q31.1
| 1.388 |
| HOXC13-AS | HOXC13 antisense RNA | 12q13.13
| 1.378 |
| ULBP1 | UL16 binding protein 1 | 6q25
| 1.372 |
| MIR9-2 | microRNA 9-2 | 5q14.3
| 1.369 |
| CYS1 | cystin 1 | 2p25.1
| 1.361 |
| ZFHX4 | zinc finger homeobox 4 | 8q21.11
| 1.359 |
| NRARP | NOTCH-regulated ankyrin repeat protein | 9q34.3
| 1.356 |
| CDKN2A-AS1 | CDKN2A antisense RNA 1 (head to head) | 9p21.3
| 1.353 |
| HOXC13 | homeobox C13 | 12q13.13
| 1.332 |
| MNX1 | motor neuron and pancreas homeobox 1 | 7q36
| 1.324 |
| NEUROG1 | neurogenin 1 | 5q23-q31
| 1.319 |
| TCHH | trichohyalin | 1q21-q23
| 1.306 |
| ATF3 | activating transcription factor 3 | 1q32.3
| 1.302 |
| MST1P2 | macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2 | 1p36.13
| 1.298 |
| MNX1-AS1 | MNX1 antisense RNA 1 (head to head) | 7q36.3
| 1.296 |
| CBX4 | chromobox homolog 4 | 17q25.3
| 1.282 |
| CDC20B | cell division cycle 20B | 5q11.2
| 1.275 |
| HOXD10 | homeobox D10 | 2q31.1
| 1.274 |
| ALX3 | ALX homeobox 3 | 1p13.3
| 1.274 |
| TCF21 | transcription factor 21 | 6q23.2
| 1.258 |
| ZFHX4-AS1 | ZFHX4 antisense RNA 1 | 8q21.11
| 1.255 |
| TARID | TCF21 antisense RNA inducing promoter demethylation | 6q23.2
| 1.254 |
| IGFBP5 | insulin-like growth factor binding protein 5 | 2q35
| 1.238 |
| MIR449C | microRNA 449c | 5
| 1.233 |
| PIK3R2 | phosphoinositide-3-kinase, regulatory subunit 2 (beta) | 19p13.11
| 1.232 |
| RPS7P5 | ribosomal protein S7 pseudogene 5 | 1q43
| 1.225 |
| RNU11 | RNA, U11 small nuclear | 1p35.3
| 1.219 |
| SALRNA1 | senescence associated long non-coding RNA 1 | 14q23.1
| 1.217 |
| CCDC110 | coiled-coil domain containing 110 | 4q35.1
| 1.215 |
| AATF | apoptosis antagonizing transcription factor | 17q12
| 1.213 |
| CLVS2 | clavesin 2 | 6q22.31
| 1.208 |
| OLIG2 | oligodendrocyte lineage transcription factor 2 | 21q22.11
| 1.203 |
| CNR1 | cannabinoid receptor 1 (brain) | 6q14-q15
| 1.196 |
| PTENP1 | phosphatase and tensin homolog pseudogene 1 (functional) | 9p13.3
| 1.194 |
| CSGALNACT1 | chondroitin sulfate N-acetylgalactosaminyltransferase 1 | 8p21.3
| 1.191 |
| EGLN3 | egl-9 family hypoxia-inducible factor 3 | 14q12
| 1.191 |
| TAGAP | T-cell activation RhoGTPase activating protein | 6q25.3
| 1.19 |
| CCNJL | cyclin J-like | 5q33.3
| 1.189 |
| B3GALT5 | UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 | 21q22.3
| 1.188 |
| PTENP1-AS | PTENP1 antisense RNA | 9p13.3
| 1.187 |
| ULBP2 | UL16 binding protein 2 | 6q25
| 1.185 |
| TAL1 | T-cell acute lymphocytic leukemia 1 | 1p32
| 1.184 |
| B3GALT5-AS1 | B3GALT5 antisense RNA 1 | 21q22.2
| 1.182 |
| PLAGL1 | pleiomorphic adenoma gene-like 1 | 6q24-q25
| 1.181 |
| SFRP2 | secreted frizzled-related protein 2 | 4q31.3
| 1.177 |
| LGI3 | leucine-rich repeat LGI family, member 3 | 8p21.2
| 1.177 |
| BUB3 | BUB3 mitotic checkpoint protein | 10q24
| 1.176 |
| PDGFRL | platelet-derived growth factor receptor-like | 8p22-p21.3
| 1.175 |
| C6orf141 | chromosome 6 open reading frame 141 | 6p12.3
| 1.173 |
| CELF2 | CUGBP, Elav-like family member 2 | 10p13
| 1.173 |
| KCNB2 | potassium channel, voltage gated Shab related subfamily B, member 2 | 8q13.2
| 1.169 |
| LOC400927 | NA | NA
| 1.168 |
| NR3C2 | nuclear receptor subfamily 3, group C, member 2 | 4q31
| 1.167 |
| ETNPPL | ethanolamine-phosphate phospho-lyase | 4q25
| 1.166 |
| SLC16A12 | solute carrier family 16, member 12 | 10q23.32
| 1.164 |
| LOC389895 | NA | NA
| 1.164 |
| OLIG3 | oligodendrocyte transcription factor 3 | 6q23.3
| 1.164 |
| CD200R1 | CD200 receptor 1 | 3q13
| 1.163 |
| IL17D | interleukin 17D | 13q11
| 1.163 |
| ASXL3 | additional sex combs like transcriptional regulator 3 | 18q11
| 1.161 |
| ROBO2 | roundabout guidance receptor 2 | 3p12.3
| 1.16 |
| MIR449B | microRNA 449b | 5q11.2
| 1.156 |
| FOXC2 | forkhead box C2 | 16q24.1
| 1.156 |
| RSPO2 | R-spondin 2 | 8q23.1
| 1.152 |
| DOCK3 | dedicator of cytokinesis 3 | 3p21
| 1.151 |
| MIR449A | microRNA 449a | 5q11.2
| 1.151 |
| GTPBP8 | GTP-binding protein 8 (putative) | 3q13.2
| 1.151 |
| LOC400927-CSNK1E | NA | NA
| 1.149 |
| HMG20B | high mobility group 20B | 19p13.3
| 1.149 |
| ARHGEF7 | Rho guanine nucleotide exchange factor (GEF) 7 | 13q33.3
| 1.145 |
| MIR4787 | microRNA 4787 | 3
| 1.144 |
| CBX7 | chromobox homolog 7 | 22q13.1
| 1.144 |
| FLT1 | fms-related tyrosine kinase 1 | 13q12
| 1.139 |
| NPNT | nephronectin | 4q24
| 1.138 |
| PIK3R3 | phosphoinositide-3-kinase, regulatory subunit 3 (gamma) | 1p34.1
| 1.137 |
| RPS4X | ribosomal protein S4, X-linked | Xq13.1
| 1.137 |
| STAU2-AS1 | STAU2 antisense RNA 1 | 8q21.11
| 1.136 |
| FOXC2-AS1 | FOXC2 antisense RNA 1 | 16q24.1
| 1.132 |
| SIM1 | single-minded family bHLH transcription factor 1 | 6q16.3
| 1.127 |
| DNAJC5G | DnaJ (Hsp40) homolog, subfamily C, member 5 gamma | 2p23
| 1.126 |
| MCIDAS | multiciliate differentiation and DNA synthesis associated cell cycle protein | 5q11.2
| 1.119 |
| MIR6723 | microRNA 6723 | 1
| 1.118 |