| CHD7 | chromodomain helicase DNA binding protein 7 | 8q12.2
| 2.447 |
| RCAN3 | RCAN family member 3 | 1p36.11
| 2.329 |
| SP9 | Sp9 transcription factor | 2q31.1
| 2.283 |
| RCAN3AS | RCAN3 antisense | 1p36.11
| 2.28 |
| TRIM71 | tripartite motif containing 71, E3 ubiquitin protein ligase | 3p22.3
| 2.137 |
| EMX1 | empty spiracles homeobox 1 | 2p13.2
| 2.086 |
| VGLL4 | vestigial-like family member 4 | 3p25.2
| 2.053 |
| ARHGEF7 | Rho guanine nucleotide exchange factor (GEF) 7 | 13q33.3
| 1.985 |
| FOXD1 | forkhead box D1 | 5q13.2
| 1.823 |
| LOC101927914 | NA | NA
| 1.808 |
| NR4A3 | nuclear receptor subfamily 4, group A, member 3 | 9q22
| 1.745 |
| NFATC2 | nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 | 20q13.2
| 1.741 |
| PBX1 | pre-B-cell leukemia homeobox 1 | 1q23.3
| 1.722 |
| SESTD1 | SEC14 and spectrin domains 1 | 2q31.3
| 1.715 |
| TSPAN5 | tetraspanin 5 | 4q22.3
| 1.706 |
| ARNTL2 | aryl hydrocarbon receptor nuclear translocator-like 2 | 12p12.2-p11.2
| 1.684 |
| LINC01305 | long intergenic non-protein coding RNA 1305 | 2q31.1
| 1.684 |
| DOCK4 | dedicator of cytokinesis 4 | 7q31.1
| 1.673 |
| ZNF277 | zinc finger protein 277 | 7q31.1
| 1.661 |
| CTNNB1 | catenin (cadherin-associated protein), beta 1, 88kDa | 3p21
| 1.659 |
| C9orf171 | NA | NA
| 1.628 |
| LINC00554 | long intergenic non-protein coding RNA 554 | 13q32.3
| 1.618 |
| LOC101928438 | NA | NA
| 1.613 |
| HOXC4 | homeobox C4 | 12q13.13
| 1.58 |
| IL17D | interleukin 17D | 13q11
| 1.559 |
| LINC00552 | long intergenic non-protein coding RNA 552 | 13q34
| 1.543 |
| MIR3690 | microRNA 3690 | Xp22.32 and Yp11.3
| 1.54 |
| TMEM255B | transmembrane protein 255B | 13q34
| 1.539 |
| RIPK4 | receptor-interacting serine-threonine kinase 4 | 21q22.3
| 1.504 |
| HOXB13 | homeobox B13 | 17q21.32
| 1.488 |
| MIR3185 | microRNA 3185 | 17
| 1.486 |
| CLEC2L | C-type lectin domain family 2, member L | 7q34
| 1.471 |
| PRAC2 | prostate cancer susceptibility candidate 2 | 17q21.3
| 1.47 |
| LHX2 | LIM homeobox 2 | 9q33.3
| 1.463 |
| CCND2 | cyclin D2 | 12p13
| 1.457 |
| PRAC1 | prostate cancer susceptibility candidate 1 | 17q21
| 1.447 |
| MIR1203 | microRNA 1203 | 17
| 1.446 |
| SLC13A2 | solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 | 17p13.2
| 1.445 |
| GLT8D2 | glycosyltransferase 8 domain containing 2 | 12q23.3
| 1.439 |
| LHX4 | LIM homeobox 4 | 1q25.3
| 1.428 |
| TTF1 | transcription termination factor, RNA polymerase I | 9q34.3
| 1.424 |
| FOXD4 | forkhead box D4 | 9p24.3
| 1.418 |
| LINC00368 | long intergenic non-protein coding RNA 368 | 13q34
| 1.382 |
| CSF2RA | colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) | Xp22.32 and Yp11.3
| 1.372 |
| HOXD11 | homeobox D11 | 2q31.1
| 1.369 |
| HOXD12 | homeobox D12 | 2q31.1
| 1.366 |
| RNU6-63P | RNA, U6 small nuclear 63, pseudogene | 13q12.2
| 1.358 |
| FLJ12825 | NA | NA
| 1.326 |
| PBX3 | pre-B-cell leukemia homeobox 3 | 9q33.3
| 1.321 |
| CCND2-AS1 | CCND2 antisense RNA 1 | 12p13.32
| 1.321 |
| SYTL3 | synaptotagmin-like 3 | 6q25.3
| 1.313 |
| POM121L4P | POM121 transmembrane nucleoporin-like 4 pseudogene | 22q11.2
| 1.31 |
| ZBTB18 | zinc finger and BTB domain containing 18 | 1q44
| 1.309 |
| ZSWIM5 | zinc finger, SWIM-type containing 5 | 1p34.1
| 1.306 |
| TBC1D16 | TBC1 domain family, member 16 | 17q25.3
| 1.299 |
| ATF3 | activating transcription factor 3 | 1q32.3
| 1.29 |
| ERRFI1 | ERBB receptor feedback inhibitor 1 | 1p36.23
| 1.288 |
| HOXD10 | homeobox D10 | 2q31.1
| 1.28 |
| HOXD13 | homeobox D13 | 2q31.1
| 1.277 |
| LINC01082 | long intergenic non-protein coding RNA 1082 | 16q24.1
| 1.271 |
| CCDC40 | coiled-coil domain containing 40 | 17q25.3
| 1.26 |
| LOC728613 | NA | NA
| 1.259 |
| TNFRSF11A | tumor necrosis factor receptor superfamily, member 11a, NFKB activator | 18q22.1
| 1.255 |
| LOC51145 | NA | NA
| 1.235 |
| IGDCC3 | immunoglobulin superfamily, DCC subclass, member 3 | 15q22.3-q23
| 1.223 |
| AIF1L | allograft inflammatory factor 1-like | 9q34.13-q34.3
| 1.216 |
| PLEKHG3 | pleckstrin homology domain containing, family G (with RhoGef domain) member 3 | 14q23.3
| 1.202 |
| HOXD9 | homeobox D9 | 2q31.1
| 1.201 |
| PCOLCE2 | procollagen C-endopeptidase enhancer 2 | 3q21-q24
| 1.2 |
| LOC100129203 | NA | NA
| 1.198 |
| EBF1 | early B-cell factor 1 | 5q34
| 1.198 |
| TMOD1 | tropomodulin 1 | 9q22
| 1.195 |
| ZEB1 | zinc finger E-box binding homeobox 1 | 10p11.22
| 1.195 |
| HOXD8 | homeobox D8 | 2q31.1
| 1.194 |
| ZC3H12C | zinc finger CCCH-type containing 12C | 11q22.3
| 1.192 |
| CLTCL1 | clathrin, heavy chain-like 1 | 22q11.2
| 1.186 |
| TMEM191A | transmembrane protein 191A (pseudogene) | 22q11.21
| 1.183 |
| IGF1R | insulin-like growth factor 1 receptor | 15q26.3
| 1.18 |
| MIR596 | microRNA 596 | 8p23.3
| 1.18 |
| MYBL1 | v-myb avian myeloblastosis viral oncogene homolog-like 1 | 8q22
| 1.179 |
| LINC01150 | long intergenic non-protein coding RNA 1150 | 11p15.5
| 1.177 |
| LAMC3 | laminin, gamma 3 | 9q34.12
| 1.175 |
| CDCA7 | cell division cycle associated 7 | 2q31.1
| 1.175 |
| MSRB3 | methionine sulfoxide reductase B3 | 12q14.3
| 1.173 |
| GJA3 | gap junction protein, alpha 3, 46kDa | 13q12.11
| 1.169 |
| BNC1 | basonuclin 1 | 15q25.1
| 1.167 |
| LOC100288974 | NA | NA
| 1.167 |
| KIAA0319 | KIAA0319 | 6p22.3
| 1.166 |
| LOC101927740 | NA | NA
| 1.165 |
| KLHL2 | kelch-like family member 2 | 4q21.2
| 1.164 |
| SESN3 | sestrin 3 | 11q21
| 1.163 |
| DENND3 | DENN/MADD domain containing 3 | 8q24.3
| 1.163 |
| SCML4 | sex comb on midleg-like 4 (Drosophila) | 6q21
| 1.155 |
| TSGA10 | testis specific, 10 | 2q11.2
| 1.153 |
| FERMT2 | fermitin family member 2 | 14q22.1
| 1.153 |
| KIF17 | kinesin family member 17 | 1p36.13
| 1.152 |
| BMI1 | BMI1 proto-oncogene, polycomb ring finger | 10p13
| 1.152 |
| ABHD17C | abhydrolase domain containing 17C | 15q25.1
| 1.15 |
| NCR2 | natural cytotoxicity triggering receptor 2 | 6p21.1
| 1.148 |
| C2orf15 | chromosome 2 open reading frame 15 | 2q11.2
| 1.147 |
| LHX9 | LIM homeobox 9 | 1q31.1
| 1.145 |
| HEY2 | hes-related family bHLH transcription factor with YRPW motif 2 | 6q
| 1.137 |
| PERP | PERP, TP53 apoptosis effector | 6q24
| 1.135 |
| ATXN7L1 | ataxin 7-like 1 | 7q22.1
| 1.135 |
| RUNX3 | runt-related transcription factor 3 | 1p36
| 1.134 |
| CTTNBP2 | cortactin binding protein 2 | 7q31
| 1.133 |
| GJC1 | gap junction protein, gamma 1, 45kDa | 17q21.31
| 1.131 |
| EMILIN2 | elastin microfibril interfacer 2 | 18p11.3
| 1.13 |
| EML1 | echinoderm microtubule associated protein like 1 | 14q32
| 1.129 |
| EVX2 | even-skipped homeobox 2 | 2q31.1
| 1.127 |
| NFIB | nuclear factor I/B | 9p24.1
| 1.124 |
| ZSWIM6 | zinc finger, SWIM-type containing 6 | 5q12.1
| 1.11 |
| LINC01475 | long intergenic non-protein coding RNA 1475 | 10q24.2
| 1.107 |
| FOXC1 | forkhead box C1 | 6p25
| 1.106 |
| ZEB1-AS1 | ZEB1 antisense RNA 1 | 10p11.22
| 1.103 |
| HCK | HCK proto-oncogene, Src family tyrosine kinase | 20q11-q12
| 1.099 |
| PRDM13 | PR domain containing 13 | 6q16.2
| 1.092 |
| YPEL1 | yippee-like 1 | 22q11.2
| 1.091 |
| VSX2 | visual system homeobox 2 | 14q24.3
| 1.088 |
| LOC101927932 | NA | NA
| 1.088 |
| GNAS | GNAS complex locus | 20q13.2-q13.3
| 1.077 |
| NUP214 | nucleoporin 214kDa | 9q34
| 1.077 |
| ZIC2 | Zic family member 2 | 13q32
| 1.074 |
| KDM4A | lysine (K)-specific demethylase 4A | 1p34.1
| 1.065 |
| DYNLT1 | dynein, light chain, Tctex-type 1 | 6q25.2-q25.3
| 1.065 |
| IRAIN | IGF1R antisense imprinted non-protein coding RNA | 15q26.3
| 1.06 |
| HNF1B | HNF1 homeobox B | 17q12
| 1.05 |
| MIR615 | microRNA 615 | 12q13.13
| 1.049 |
| AVEN | apoptosis, caspase activation inhibitor | 15q13.1
| 1.045 |
| LINC01386 | long intergenic non-protein coding RNA 1386 | 5q13.2
| 1.043 |
| WNT16 | wingless-type MMTV integration site family, member 16 | 7q31
| 1.042 |
| NKX2-3 | NK2 homeobox 3 | 10q24.2
| 1.032 |
| VPREB1 | pre-B lymphocyte 1 | 22q11.2
| 1.028 |
| NR2E1 | nuclear receptor subfamily 2, group E, member 1 | 6q21
| 1.024 |
| LOC100506985 | NA | NA
| 1.02 |
| HOXC5 | homeobox C5 | 12q13.13
| 1.018 |
| NCMAP | noncompact myelin associated protein | 1p36.11
| 1.018 |
| HOXD-AS2 | HOXD cluster antisense RNA 2 | 2q31.1
| 1.014 |
| PCMTD2 | protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 | 20q13.33
| 0.998 |
| PRSS41 | protease, serine, 41 | 16p13.3
| 0.998 |
| UNCX | UNC homeobox | 7p22.3
| 0.989 |
| CSF1R | colony stimulating factor 1 receptor | 5q32
| 0.969 |
| SLC25A5-AS1 | SLC25A5 antisense RNA 1 | Xq24
| 0.955 |
| SHE | Src homology 2 domain containing E | 1q21.3
| 0.952 |
| TDRD10 | tudor domain containing 10 | 1q21.3
| 0.951 |
| CABLES1 | Cdk5 and Abl enzyme substrate 1 | 18q11.2
| 0.951 |
| COMMD3-BMI1 | COMMD3-BMI1 readthrough | 10p12.2
| 0.949 |
| COMMD3 | COMM domain containing 3 | 10p12.2
| 0.949 |
| PDIA6 | protein disulfide isomerase family A, member 6 | 2p25.1
| 0.944 |
| RHOBTB2 | Rho-related BTB domain containing 2 | 8p21.2
| 0.93 |
| SOBP | sine oculis binding protein homolog | 6q21
| 0.929 |
| AKT3 | v-akt murine thymoma viral oncogene homolog 3 | 1q44
| 0.928 |
| SLC25A5 | solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 | Xq24
| 0.928 |
| PRSS33 | protease, serine, 33 | 16p13.3
| 0.921 |
| ANKRD29 | ankyrin repeat domain 29 | 18q11.2
| 0.918 |
| NODAL | nodal growth differentiation factor | 10q22.1
| 0.911 |
| FOXCUT | FOXC1 upstream transcript (non-protein coding) | 6p25.3
| 0.908 |
| FAM230B | family with sequence similarity 230, member B (non-protein coding) | 22q11.21
| 0.908 |
| KLF14 | Kruppel-like factor 14 | 7q32.3
| 0.907 |
| HOTAIR | HOX transcript antisense RNA | 12q13.13
| 0.902 |
| ARHGEF10 | Rho guanine nucleotide exchange factor (GEF) 10 | 8p23
| 0.901 |
| MRC1 | mannose receptor, C type 1 | 10p13
| 0.889 |
| HOXC6 | homeobox C6 | 12q13.13
| 0.88 |
| HOXC11 | homeobox C11 | 12q13.13
| 0.876 |
| HOXC12 | homeobox C12 | 12q13.13
| 0.863 |
| MIR6731 | microRNA 6731 | 1
| 0.841 |
| MNX1-AS1 | MNX1 antisense RNA 1 (head to head) | 7q36.3
| 0.83 |
| MIR3616 | microRNA 3616 | 20
| 0.829 |
| PRDM14 | PR domain containing 14 | 8q13.3
| 0.823 |
| MNX1 | motor neuron and pancreas homeobox 1 | 7q36
| 0.823 |
| LINC00254 | long intergenic non-protein coding RNA 254 | 16p13.3
| 0.818 |
| HCFC2 | host cell factor C2 | 12q23.3
| 0.816 |
| DSP | desmoplakin | 6p24.3
| 0.812 |
| LINC00895 | long intergenic non-protein coding RNA 895 | 22q11.21
| 0.807 |
| MIR511 | microRNA 511 | 10p12.33
| 0.805 |
| LBX1-AS1 | LBX1 antisense RNA 1 (head to head) | 10q24.32
| 0.798 |
| PRDX1 | peroxiredoxin 1 | 1p34.1
| 0.797 |
| LBX1 | ladybird homeobox 1 | 10q24.32
| 0.797 |
| THOC1 | THO complex 1 | 18p11.32
| 0.777 |
| SNRK | SNF related kinase | 3p22.1
| 0.773 |
| LOC101928710 | NA | NA
| 0.768 |
| CRKL | v-crk avian sarcoma virus CT10 oncogene homolog-like | 22q11.21
| 0.764 |
| HOTTIP | HOXA distal transcript antisense RNA | 7p15.2
| 0.76 |
| MIR10B | microRNA 10b | 2q31.1
| 0.752 |
| HOXA13 | homeobox A13 | 7p15.2
| 0.751 |
| HOXC10 | homeobox C10 | 12q13.13
| 0.75 |
| CCNC | cyclin C | 6q21
| 0.748 |
| HOXC-AS3 | HOXC cluster antisense RNA 3 | 12q13.13
| 0.743 |
| HOXD4 | homeobox D4 | 2q31.1
| 0.74 |
| ZIC5 | Zic family member 5 | 13q32.2
| 0.738 |
| CCDC110 | coiled-coil domain containing 110 | 4q35.1
| 0.719 |
| CLDN5 | claudin 5 | 22q11.21
| 0.716 |
| SLC4A1 | solute carrier family 4 (anion exchanger), member 1 (Diego blood group) | 17q21.31
| 0.714 |
| SH2D5 | SH2 domain containing 5 | 1p36.12
| 0.712 |
| HOXD3 | homeobox D3 | 2q31.1
| 0.706 |
| GJD4 | gap junction protein, delta 4, 40.1kDa | 10p11.22
| 0.699 |
| ELOVL2-AS1 | ELOVL2 antisense RNA 1 | 6p24.2
| 0.698 |
| GINS4 | GINS complex subunit 4 (Sld5 homolog) | 8p11.21
| 0.696 |
| DEFB135 | defensin, beta 135 | 8p23.1
| 0.693 |
| LINC01384 | long intergenic non-protein coding RNA 1384 | 20p11.21
| 0.691 |