| TBX2-AS1 | TBX2 antisense RNA 1 | 17q23.2
| 1.66 |
| TBX2 | T-box 2 | 17q23.2
| 1.653 |
| SKOR1 | SKI family transcriptional corepressor 1 | 15q23
| 1.419 |
| MIR4461 | microRNA 4461 | 5
| 1.181 |
| MIR129-2 | microRNA 129-2 | 11p11.2
| 1.168 |
| C17orf82 | chromosome 17 open reading frame 82 | 17q23.2
| 1.154 |
| PHLDB1 | pleckstrin homology-like domain, family B, member 1 | 11q23.3
| 1.131 |
| PRDM12 | PR domain containing 12 | 9q34.12
| 1.131 |
| MIR6723 | microRNA 6723 | 1
| 1.117 |
| LOC101929076 | NA | NA
| 1.094 |
| LOC101928626 | NA | NA
| 1.082 |
| LINC00261 | long intergenic non-protein coding RNA 261 | 20p11.21
| 1.074 |
| RNU6-1 | RNA, U6 small nuclear 1 | 15q23
| 1.044 |
| RNU6-9 | RNA, U6 small nuclear 9 | 19p13.3
| 1.044 |
| RNU6-7 | RNA, U6 small nuclear 7 | 14q12
| 1.044 |
| RNU6-8 | RNA, U6 small nuclear 8 | 14q12
| 1.044 |
| RNU6-2 | RNA, U6 small nuclear 2 | 19p13.3
| 1.044 |
| MIR4477A | microRNA 4477a | 9
| 1.036 |
| MIR4477B | microRNA 4477b | 9
| 1.033 |
| FOXA2 | forkhead box A2 | 20p11
| 1.007 |
| TCHH | trichohyalin | 1q21-q23
| 0.969 |
| NR2F1 | nuclear receptor subfamily 2, group F, member 1 | 5q14
| 0.908 |
| NR2F1-AS1 | NR2F1 antisense RNA 1 | 5q15
| 0.903 |
| CBX8 | chromobox homolog 8 | 17q25.3
| 0.875 |
| ULBP1 | UL16 binding protein 1 | 6q25
| 0.808 |
| GRP | gastrin-releasing peptide | 18q21.1-q21.32
| 0.661 |
| RAX | retina and anterior neural fold homeobox | 18q21.31
| 0.656 |
| FGF5 | fibroblast growth factor 5 | 4q21
| 0.626 |
| NFIX | nuclear factor I/X (CCAAT-binding transcription factor) | 19p13.13
| 0.604 |
| KCNA1 | potassium channel, voltage gated shaker related subfamily A, member 1 | 12p13
| 0.603 |
| SKOR2 | SKI family transcriptional corepressor 2 | 18q21.1
| 0.601 |
| PGR | progesterone receptor | 11q22-q23
| 0.601 |
| LOC101054525 | NA | NA
| 0.601 |
| LINC00925 | NA | NA
| 0.6 |
| FOXC1 | forkhead box C1 | 6p25
| 0.598 |
| PTGDR | prostaglandin D2 receptor (DP) | 14q22.1
| 0.596 |
| MT1JP | metallothionein 1J, pseudogene | 16q12.2
| 0.595 |
| BLVRB | biliverdin reductase B | 19q13.1-q13.2
| 0.593 |
| HOXD13 | homeobox D13 | 2q31.1
| 0.589 |
| WNT6 | wingless-type MMTV integration site family, member 6 | 2q35
| 0.589 |
| EMX2OS | EMX2 opposite strand/antisense RNA | 10q26.11
| 0.588 |
| TBR1 | T-box, brain, 1 | 2q24.2
| 0.588 |
| PITX3 | paired-like homeodomain 3 | 10q24.32
| 0.587 |
| SPTBN4 | spectrin, beta, non-erythrocytic 4 | 19q13.13
| 0.586 |
| FOXG1 | forkhead box G1 | 14q12
| 0.586 |
| ALX3 | ALX homeobox 3 | 1p13.3
| 0.585 |
| LOC100132891 | NA | NA
| 0.585 |
| IGSF21 | immunoglobin superfamily, member 21 | 1p36.13
| 0.584 |
| GSX1 | GS homeobox 1 | 13q12.2
| 0.584 |
| NR2F2 | nuclear receptor subfamily 2, group F, member 2 | 15q26
| 0.584 |
| MIR1469 | microRNA 1469 | 15q26.2
| 0.582 |
| VSX2 | visual system homeobox 2 | 14q24.3
| 0.581 |
| CBLN2 | cerebellin 2 precursor | 18q22.3
| 0.581 |
| CSMD1 | CUB and Sushi multiple domains 1 | 8p23.2
| 0.581 |
| LINC01124 | long intergenic non-protein coding RNA 1124 | 2q31.1
| 0.581 |
| TMEM163 | transmembrane protein 163 | 2q21.3
| 0.58 |
| BMI1 | BMI1 proto-oncogene, polycomb ring finger | 10p13
| 0.58 |
| BARX1 | BARX homeobox 1 | 9q22.32
| 0.579 |
| TLX2 | T-cell leukemia homeobox 2 | 2p13.1
| 0.579 |
| HES7 | hes family bHLH transcription factor 7 | 17p13.1
| 0.579 |
| POU3F3 | POU class 3 homeobox 3 | 2q12.1
| 0.578 |
| ONECUT2 | one cut homeobox 2 | 18q21.31
| 0.578 |
| CRLF1 | cytokine receptor-like factor 1 | 19p12
| 0.577 |
| HMX3 | H6 family homeobox 3 | 10q26.13
| 0.577 |
| GDF6 | growth differentiation factor 6 | 8q22.1
| 0.576 |
| LRRTM1 | leucine rich repeat transmembrane neuronal 1 | 2p12
| 0.576 |
| SOX9-AS1 | SOX9 antisense RNA 1 | 17q24.3
| 0.576 |
| RUNX3 | runt-related transcription factor 3 | 1p36
| 0.576 |
| NTN1 | netrin 1 | 17p13.1
| 0.575 |
| SCRT1 | scratch family zinc finger 1 | 8q24.3
| 0.574 |
| EMX1 | empty spiracles homeobox 1 | 2p13.2
| 0.574 |
| RSPO3 | R-spondin 3 | 6q22.33
| 0.573 |
| NTF3 | neurotrophin 3 | 12p13
| 0.573 |
| CDX2 | caudal type homeobox 2 | 13q12.2
| 0.573 |
| GSX2 | GS homeobox 2 | 4q12
| 0.572 |
| WT1-AS | WT1 antisense RNA | 11p13
| 0.571 |
| LHX6 | LIM homeobox 6 | 9q33.2
| 0.571 |
| WT1 | Wilms tumor 1 | 11p13
| 0.571 |
| ZIC1 | Zic family member 1 | 3q24
| 0.57 |
| FZD10 | frizzled class receptor 10 | 12q24.33
| 0.569 |
| FOXD2-AS1 | FOXD2 antisense RNA 1 (head to head) | 1p33
| 0.568 |
| CBLN4 | cerebellin 4 precursor | 20q13
| 0.567 |
| PDGFRA | platelet-derived growth factor receptor, alpha polypeptide | 4q12
| 0.567 |
| MTRNR2L1 | MT-RNR2-like 1 | 17p11.2
| 0.566 |
| NEUROD2 | neuronal differentiation 2 | 17q12
| 0.565 |
| FZD1 | frizzled class receptor 1 | 7q21
| 0.563 |
| SP5 | Sp5 transcription factor | 2q31
| 0.563 |
| MDGA1 | MAM domain containing glycosylphosphatidylinositol anchor 1 | 6p21
| 0.561 |
| HOXB-AS1 | HOXB cluster antisense RNA 1 | 17q21.32
| 0.561 |
| CTNNA2 | catenin (cadherin-associated protein), alpha 2 | 2p12-p11.1
| 0.559 |
| LINC00682 | long intergenic non-protein coding RNA 682 | 4p13
| 0.559 |
| BCL2L11 | BCL2-like 11 (apoptosis facilitator) | 2q13
| 0.558 |
| SSTR1 | somatostatin receptor 1 | 14q13
| 0.555 |
| ANKRD19P | ankyrin repeat domain 19, pseudogene | 9q22.32
| 0.554 |
| MSC | musculin | 8q13.3
| 0.554 |
| FEZF2 | FEZ family zinc finger 2 | 3p21.1
| 0.554 |
| FZD10-AS1 | FZD10 antisense RNA 1 (head to head) | 12q24.33
| 0.551 |
| C1orf198 | chromosome 1 open reading frame 198 | 1q42.2
| 0.551 |
| LINC01410 | long intergenic non-protein coding RNA 1410 | 9q13
| 0.549 |
| HOXB2 | homeobox B2 | 17q21.32
| 0.546 |
| PRDM8 | PR domain containing 8 | 4q21
| 0.546 |
| FOXG1-AS1 | FOXG1 antisense RNA 1 (head to head) | 14q12
| 0.546 |
| MT1M | metallothionein 1M | 16q13
| 0.546 |
| SLITRK1 | SLIT and NTRK-like family, member 1 | 13q31.1
| 0.543 |
| FEV | FEV (ETS oncogene family) | 2q36
| 0.542 |
| LOC101927604 | NA | NA
| 0.542 |
| FOXD2 | forkhead box D2 | 1p34-p32
| 0.538 |
| SHOX2 | short stature homeobox 2 | 3q25.32
| 0.535 |
| LOC400997 | NA | NA
| 0.533 |
| EMX2 | empty spiracles homeobox 2 | 10q26.11
| 0.53 |
| MT1A | metallothionein 1A | 16q13
| 0.53 |
| TCHHL1 | trichohyalin-like 1 | 1q21.3
| 0.528 |
| MIR5707 | microRNA 5707 | 7
| 0.525 |
| SALRNA1 | senescence associated long non-coding RNA 1 | 14q23.1
| 0.524 |
| SOX9 | SRY (sex determining region Y)-box 9 | 17q24.3
| 0.523 |
| DMRTA2 | DMRT-like family A2 | 1p33
| 0.518 |
| DLX1 | distal-less homeobox 1 | 2q31.1
| 0.518 |
| ALOXE3 | arachidonate lipoxygenase 3 | 17p13.1
| 0.517 |
| ZIC4 | Zic family member 4 | 3q24
| 0.514 |
| C5orf66 | chromosome 5 open reading frame 66 | 5q31.1
| 0.514 |
| LINC01389 | long intergenic non-protein coding RNA 1389 | 1p33
| 0.511 |
| OSR2 | odd-skipped related transciption factor 2 | 8q22.2
| 0.506 |
| MCIDAS | multiciliate differentiation and DNA synthesis associated cell cycle protein | 5q11.2
| 0.504 |
| LINC01097 | long intergenic non-protein coding RNA 1097 | 4p15.33
| 0.502 |
| LINC01551 | long intergenic non-protein coding RNA 1551 | 14q11.2
| 0.501 |
| GBF1 | golgi brefeldin A resistant guanine nucleotide exchange factor 1 | 10q24
| 0.5 |
| PCBD2 | pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 | 5q31.1
| 0.498 |
| PITX1 | paired-like homeodomain 1 | 5q31.1
| 0.494 |
| FGF17 | fibroblast growth factor 17 | 8p21.3
| 0.493 |
| LINC01158 | long intergenic non-protein coding RNA 1158 | 2q12.1
| 0.492 |
| FOXCUT | FOXC1 upstream transcript (non-protein coding) | 6p25.3
| 0.491 |
| MIR670 | microRNA 670 | 11
| 0.49 |
| HOTTIP | HOXA distal transcript antisense RNA | 7p15.2
| 0.487 |
| DMTN | dematin actin binding protein | 8p21.1
| 0.484 |
| HOXA13 | homeobox A13 | 7p15.2
| 0.481 |
| C1orf61 | chromosome 1 open reading frame 61 | 1q22
| 0.479 |
| COMMD3-BMI1 | COMMD3-BMI1 readthrough | 10p12.2
| 0.478 |
| COMMD3 | COMM domain containing 3 | 10p12.2
| 0.478 |
| LINC01391 | long intergenic non-protein coding RNA 1391 | 3q22.3
| 0.472 |
| STK3 | serine/threonine kinase 3 | 8q22.2
| 0.47 |
| LOC642366 | NA | NA
| 0.467 |
| SIX1 | SIX homeobox 1 | 14q23.1
| 0.467 |
| LINC00608 | long intergenic non-protein coding RNA 608 | 2q35
| 0.466 |
| ISL1 | ISL LIM homeobox 1 | 5q11.2
| 0.463 |
| NR2F2-AS1 | NR2F2 antisense RNA 1 | 15q26.2
| 0.46 |
| RSRC1 | arginine/serine-rich coiled-coil 1 | 3q25.32
| 0.458 |
| RAET1K | retinoic acid early transcript 1K pseudogene | 6q25.1
| 0.454 |
| TMEM59L | transmembrane protein 59-like | 19p12
| 0.454 |
| PTPRN2 | protein tyrosine phosphatase, receptor type, N polypeptide 2 | 7q36
| 0.451 |
| HOXD12 | homeobox D12 | 2q31.1
| 0.445 |
| PCGF1 | polycomb group ring finger 1 | 2p13.1
| 0.442 |
| DGAT1 | diacylglycerol O-acyltransferase 1 | 8q24.3
| 0.441 |
| EVX2 | even-skipped homeobox 2 | 2q31.1
| 0.439 |
| CA4 | carbonic anhydrase IV | 17q23.1
| 0.435 |
| NKX3-2 | NK3 homeobox 2 | 4p16.3
| 0.434 |
| MT1DP | metallothionein 1D, pseudogene (functional) | 16q13
| 0.433 |
| NKX2-5 | NK2 homeobox 5 | 5q34
| 0.417 |
| FOXL2 | forkhead box L2 | 3q23
| 0.417 |
| FOXL2NB | FOXL2 neighbor | 3q22.3
| 0.415 |
| MT1E | metallothionein 1E | 16q13
| 0.413 |
| CBX2 | chromobox homolog 2 | 17q25.3
| 0.41 |
| HOXB13 | homeobox B13 | 17q21.32
| 0.403 |
| MIR9-3 | microRNA 9-3 | 15q26.1
| 0.402 |
| CCNO | cyclin O | 5q11.2
| 0.401 |
| LINC01384 | long intergenic non-protein coding RNA 1384 | 20p11.21
| 0.401 |
| LOC440982 | NA | NA
| 0.4 |
| CRYBA2 | crystallin, beta A2 | 2q35
| 0.398 |
| DQX1 | DEAQ box RNA-dependent ATPase 1 | 2p12
| 0.396 |
| NOL4L | nucleolar protein 4-like | 20q11.21
| 0.395 |
| LOC100271832 | NA | NA
| 0.393 |
| C5orf66-AS1 | C5orf66 antisense RNA 1 | 5q31.1
| 0.392 |
| TBX15 | T-box 15 | 1p11.1
| 0.392 |
| HOXB1 | homeobox B1 | 17q21.32
| 0.383 |
| LINC01096 | long intergenic non-protein coding RNA 1096 | 4p15.33
| 0.38 |
| MIR6731 | microRNA 6731 | 1
| 0.373 |
| LBX2 | ladybird homeobox 2 | 2p13.1
| 0.371 |
| FOXD1 | forkhead box D1 | 5q13.2
| 0.367 |
| LINC01397 | long intergenic non-protein coding RNA 1397 | 1p13.3
| 0.362 |
| LBX2-AS1 | LBX2 antisense RNA 1 | 2p13.1
| 0.36 |
| HMX2 | H6 family homeobox 2 | 10q26.13
| 0.356 |
| EXOSC2 | exosome component 2 | 9q34
| 0.352 |
| EN1 | engrailed homeobox 1 | 2q14.2
| 0.35 |
| HTRA2 | HtrA serine peptidase 2 | 2p13.1
| 0.35 |
| CACNA1C-IT3 | CACNA1C intronic transcript 3 | 12p13.33
| 0.349 |
| AUP1 | ancient ubiquitous protein 1 | 2p13
| 0.343 |
| ELOVL3 | ELOVL fatty acid elongase 3 | 10q24
| 0.341 |
| MIR3185 | microRNA 3185 | 17
| 0.339 |
| MIR9-1 | microRNA 9-1 | 1q22
| 0.335 |
| ULBP2 | UL16 binding protein 2 | 6q25
| 0.334 |
| MIR6724-1 | microRNA 6724-1 | 21
| 0.333 |
| MIR6724-2 | microRNA 6724-2 | 21
| 0.333 |
| MIR6724-3 | microRNA 6724-3 | 21
| 0.333 |
| MIR6724-4 | microRNA 6724-4 | 21
| 0.333 |
| HOXD11 | homeobox D11 | 2q31.1
| 0.329 |
| PRAC2 | prostate cancer susceptibility candidate 2 | 17q21.3
| 0.329 |
| CBX4 | chromobox homolog 4 | 17q25.3
| 0.327 |
| LOC101929698 | NA | NA
| 0.325 |
| LINC01159 | long intergenic non-protein coding RNA 1159 | 2q12.1
| 0.321 |
| PRAC1 | prostate cancer susceptibility candidate 1 | 17q21
| 0.314 |
| MT1B | metallothionein 1B | 16q13
| 0.312 |