| ALX3 | ALX homeobox 3 | 1p13.3
| 2.422 |
| LINC01397 | long intergenic non-protein coding RNA 1397 | 1p13.3
| 2.225 |
| FOXG1 | forkhead box G1 | 14q12
| 2.062 |
| FOXG1-AS1 | FOXG1 antisense RNA 1 (head to head) | 14q12
| 1.987 |
| LINC01551 | long intergenic non-protein coding RNA 1551 | 14q11.2
| 1.95 |
| MIR196A1 | microRNA 196a-1 | 17q21.32
| 1.851 |
| HOXA13 | homeobox A13 | 7p15.2
| 1.847 |
| HOTTIP | HOXA distal transcript antisense RNA | 7p15.2
| 1.844 |
| CRYBA2 | crystallin, beta A2 | 2q35
| 1.834 |
| MIR6723 | microRNA 6723 | 1
| 1.676 |
| LOC101928626 | NA | NA
| 1.656 |
| MIR375 | microRNA 375 | 2q35
| 1.627 |
| LOC100129175 | NA | NA
| 1.62 |
| HOXD9 | homeobox D9 | 2q31.1
| 1.596 |
| HOXB9 | homeobox B9 | 17q21.32
| 1.574 |
| MCIDAS | multiciliate differentiation and DNA synthesis associated cell cycle protein | 5q11.2
| 1.534 |
| NKX2-5 | NK2 homeobox 5 | 5q34
| 1.523 |
| FEV | FEV (ETS oncogene family) | 2q36
| 1.467 |
| HOXD10 | homeobox D10 | 2q31.1
| 1.466 |
| CCNO | cyclin O | 5q11.2
| 1.425 |
| HOXD12 | homeobox D12 | 2q31.1
| 1.412 |
| NFIX | nuclear factor I/X (CCAAT-binding transcription factor) | 19p13.13
| 1.366 |
| HOXD11 | homeobox D11 | 2q31.1
| 1.364 |
| HOXB-AS3 | HOXB cluster antisense RNA 3 | 17q21.32
| 1.355 |
| ZNF467 | zinc finger protein 467 | 7q36.1
| 1.34 |
| HOXB5 | homeobox B5 | 17q21.32
| 1.315 |
| HOXB8 | homeobox B8 | 17q21.32
| 1.297 |
| C19orf35 | chromosome 19 open reading frame 35 | 19p13.3
| 1.289 |
| HOXA11-AS | HOXA11 antisense RNA | 7p15.2
| 1.286 |
| HOXB6 | homeobox B6 | 17q21.32
| 1.285 |
| HOXA11 | homeobox A11 | 7p15.2
| 1.277 |
| HOXC4 | homeobox C4 | 12q13.13
| 1.269 |
| HOXB7 | homeobox B7 | 17q21.32
| 1.268 |
| HOXD8 | homeobox D8 | 2q31.1
| 1.239 |
| HOXD13 | homeobox D13 | 2q31.1
| 1.239 |
| B4GALNT2 | beta-1,4-N-acetyl-galactosaminyl transferase 2 | 17q21.33
| 1.223 |
| LGR5 | leucine-rich repeat containing G protein-coupled receptor 5 | 12q22-q23
| 1.204 |
| LMO1 | LIM domain only 1 (rhombotin 1) | 11p15
| 1.204 |
| FFAR4 | free fatty acid receptor 4 | 10q23.33
| 1.203 |
| VWA5B2 | von Willebrand factor A domain containing 5B2 | 3q27.1
| 1.203 |
| ARHGAP27 | Rho GTPase activating protein 27 | 17q21.31
| 1.199 |
| SSPO | SCO-spondin | 7q36.1
| 1.196 |
| DLX4 | distal-less homeobox 4 | 17q21.33
| 1.193 |
| LINC00608 | long intergenic non-protein coding RNA 608 | 2q35
| 1.192 |
| TRIM67 | tripartite motif containing 67 | 1q42.2
| 1.192 |
| MLNR | motilin receptor | 13q14-q21
| 1.189 |
| MIR10A | microRNA 10a | 17q21.32
| 1.187 |
| ERICH1-AS1 | ERICH1 antisense RNA 1 | 8p23.3
| 1.181 |
| CXCL16 | chemokine (C-X-C motif) ligand 16 | 17p13
| 1.175 |
| ZMYND15 | zinc finger, MYND-type containing 15 | 17p13.3
| 1.171 |
| GALR1 | galanin receptor 1 | 18q23
| 1.171 |
| VSX2 | visual system homeobox 2 | 14q24.3
| 1.168 |
| ADRB1 | adrenoceptor beta 1 | 10q25.3
| 1.166 |
| FZD10 | frizzled class receptor 10 | 12q24.33
| 1.164 |
| FOXE3 | forkhead box E3 | 1p32
| 1.161 |
| NTN1 | netrin 1 | 17p13.1
| 1.161 |
| SLC18A3 | solute carrier family 18 (vesicular acetylcholine transporter), member 3 | 10q11.2
| 1.154 |
| EVX2 | even-skipped homeobox 2 | 2q31.1
| 1.15 |
| FLJ12825 | NA | NA
| 1.14 |
| CHAT | choline O-acetyltransferase | 10q11.2
| 1.14 |
| GPR88 | G protein-coupled receptor 88 | 1p21.3
| 1.138 |
| FOXD4L1 | forkhead box D4-like 1 | 2q14.1
| 1.131 |
| FZD10-AS1 | FZD10 antisense RNA 1 (head to head) | 12q24.33
| 1.128 |
| NEUROD2 | neuronal differentiation 2 | 17q12
| 1.125 |
| HOXB4 | homeobox B4 | 17q21.32
| 1.121 |
| LHX3 | LIM homeobox 3 | 9q34.3
| 1.108 |
| MIR4461 | microRNA 4461 | 5
| 1.099 |
| BARHL1 | BarH-like homeobox 1 | 9q34.13
| 1.098 |
| CDK5R2 | cyclin-dependent kinase 5, regulatory subunit 2 (p39) | 2q35
| 1.082 |
| LOC100240734 | NA | NA
| 1.079 |
| MIR615 | microRNA 615 | 12q13.13
| 1.066 |
| HOXA10 | homeobox A10 | 7p15.2
| 1.062 |
| HOXA10-HOXA9 | NA | NA
| 1.062 |
| NKX1-1 | NK1 homeobox 1 | 4p16.3
| 1.057 |
| EVX1 | even-skipped homeobox 1 | 7p15.2
| 1.052 |
| HOXC5 | homeobox C5 | 12q13.13
| 1.047 |
| WNT1 | wingless-type MMTV integration site family, member 1 | 12q13.12
| 1.036 |
| MIR4477A | microRNA 4477a | 9
| 1.034 |
| MIR4477B | microRNA 4477b | 9
| 1.031 |
| EVX1-AS | EVX1 antisense RNA | 7p15.2
| 1.03 |
| WNT10B | wingless-type MMTV integration site family, member 10B | 12q13
| 1.028 |
| CBX4 | chromobox homolog 4 | 17q25.3
| 1.012 |
| LOC100240735 | NA | NA
| 1.011 |
| HOXC8 | homeobox C8 | 12q13.13
| 1.01 |
| DHH | desert hedgehog | 12q13.1
| 1.008 |
| HOXB3 | homeobox B3 | 17q21.32
| 1.006 |
| LBX1 | ladybird homeobox 1 | 10q24.32
| 1.004 |
| ZBED4 | zinc finger, BED-type containing 4 | 22q13.33
| 0.981 |
| LBX1-AS1 | LBX1 antisense RNA 1 (head to head) | 10q24.32
| 0.979 |
| HOXC6 | homeobox C6 | 12q13.13
| 0.971 |
| HOXD-AS2 | HOXD cluster antisense RNA 2 | 2q31.1
| 0.955 |
| LTK | leukocyte receptor tyrosine kinase | 15q15.1-q21.1
| 0.95 |
| SIX3 | SIX homeobox 3 | 2p21
| 0.936 |
| SIX3-AS1 | SIX3 antisense RNA 1 | 2p21
| 0.936 |
| ERICH1 | glutamate-rich 1 | 8p23.3
| 0.916 |
| LINGO3 | leucine rich repeat and Ig domain containing 3 | 19p13.3
| 0.91 |
| ATP5EP2 | ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2 | 13q12
| 0.907 |
| MED11 | mediator complex subunit 11 | 17p13.2
| 0.89 |
| CDX2 | caudal type homeobox 2 | 13q12.2
| 0.877 |
| PGM5P3-AS1 | PGM5P3 antisense RNA 1 | 9p24.3
| 0.846 |
| PGM5P4-AS1 | PGM5P4 antisense RNA 1 | 2q14.1
| 0.845 |
| UBL4B | ubiquitin-like 4B | 1p13.3
| 0.845 |
| HOXB-AS1 | HOXB cluster antisense RNA 1 | 17q21.32
| 0.838 |
| HOXB2 | homeobox B2 | 17q21.32
| 0.829 |
| PTF1A | pancreas specific transcription factor, 1a | 10p12.31
| 0.827 |
| LGI3 | leucine-rich repeat LGI family, member 3 | 8p21.2
| 0.811 |
| HR | hair growth associated | 8p12
| 0.801 |
| MIR1224 | microRNA 1224 | 3q27.1
| 0.792 |
| WNT10A | wingless-type MMTV integration site family, member 10A | 2q35
| 0.781 |
| NBPF1 | neuroblastoma breakpoint family, member 1 | 1p36.13
| 0.78 |
| HOXC9 | homeobox C9 | 12q13.13
| 0.779 |
| HOXC-AS1 | HOXC cluster antisense RNA 1 | 12q13.13
| 0.778 |
| OAZ1 | ornithine decarboxylase antizyme 1 | 19p13.3
| 0.775 |
| HOXC12 | homeobox C12 | 12q13.13
| 0.77 |
| KIAA0895L | KIAA0895-like | 16q22.1
| 0.764 |
| IGFBP3 | insulin-like growth factor binding protein 3 | 7p12.3
| 0.763 |
| IGFBP1 | insulin-like growth factor binding protein 1 | 7p12.3
| 0.761 |
| SLC6A17 | solute carrier family 6 (neutral amino acid transporter), member 17 | 1p13.2
| 0.759 |
| MST1P2 | macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2 | 1p36.13
| 0.753 |
| HOTAIR | HOX transcript antisense RNA | 12q13.13
| 0.744 |
| RNA28S5 | RNA, 28S ribosomal 5 | 22p12
| 0.74 |
| IHH | indian hedgehog | 2q33-q35
| 0.737 |
| MIR196B | microRNA 196b | 7p15.2
| 0.733 |
| TRADD | TNFRSF1A-associated via death domain | 16q22
| 0.726 |
| HOXC-AS2 | HOXC cluster antisense RNA 2 | 12q13.13
| 0.726 |
| FBXL8 | F-box and leucine-rich repeat protein 8 | 16q22.1-q22.3
| 0.725 |
| ITPKA | inositol-trisphosphate 3-kinase A | 15q15.1
| 0.722 |
| MIR3131 | microRNA 3131 | 2
| 0.718 |
| HOXA10-AS | HOXA10 antisense RNA | 7p15.2
| 0.717 |
| ALDH1A3 | aldehyde dehydrogenase 1 family, member A3 | 15q26.3
| 0.714 |
| LRRK1 | leucine-rich repeat kinase 1 | 15q26.3
| 0.712 |
| REEP4 | receptor accessory protein 4 | 8p21.3
| 0.711 |
| RNA5-8S5 | RNA, 5.8S ribosomal 5 | 22p12
| 0.702 |
| HAGLR | HOXD antisense growth-associated long non-coding RNA | 2q31.1
| 0.701 |
| MIR7704 | microRNA 7704 | 2
| 0.698 |
| HOXD1 | homeobox D1 | 2q31.1
| 0.693 |
| HSF4 | heat shock transcription factor 4 | 16q21
| 0.693 |
| HOXC11 | homeobox C11 | 12q13.13
| 0.685 |
| SFTPC | surfactant protein C | 8p21
| 0.676 |
| PDX1-AS1 | PDX1 antisense RNA 1 | 13q12.2
| 0.674 |
| HOXC13 | homeobox C13 | 12q13.13
| 0.672 |
| NOL3 | nucleolar protein 3 (apoptosis repressor with CARD domain) | 16q22.1
| 0.671 |
| MIR196A2 | microRNA 196a-2 | 12q13.13
| 0.669 |
| HOXC13-AS | HOXC13 antisense RNA | 12q13.13
| 0.668 |
| B3GNT9 | UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 | 16q22.1
| 0.658 |
| CRIPAK | cysteine-rich PAK1 inhibitor | 4p16.3
| 0.656 |
| EXOC3L1 | exocyst complex component 3-like 1 | 16q22.1
| 0.655 |
| CROCCP2 | ciliary rootlet coiled-coil, rootletin pseudogene 2 | 1p36.13
| 0.652 |
| MIR10B | microRNA 10b | 2q31.1
| 0.646 |
| HOXA9 | homeobox A9 | 7p15.2
| 0.646 |
| PDX1 | pancreatic and duodenal homeobox 1 | 13q12.1
| 0.638 |
| HOXD4 | homeobox D4 | 2q31.1
| 0.63 |
| HOXC-AS3 | HOXC cluster antisense RNA 3 | 12q13.13
| 0.628 |
| STRIP1 | striatin interacting protein 1 | 1p13.3
| 0.627 |
| HOXC10 | homeobox C10 | 12q13.13
| 0.627 |
| ARF3 | ADP-ribosylation factor 3 | 12q13.12
| 0.625 |
| RNA18S5 | RNA, 18S ribosomal 5 | 22p12
| 0.624 |
| PRR35 | proline rich 35 | 16p13.3
| 0.607 |
| PRKG2 | protein kinase, cGMP-dependent, type II | 4q13.1-q21.1
| 0.607 |
| SYK | spleen tyrosine kinase | 9q22
| 0.607 |
| CCDC108 | coiled-coil domain containing 108 | 2q35
| 0.606 |
| PDE4B | phosphodiesterase 4B, cAMP-specific | 1p31
| 0.606 |
| LRRC71 | leucine rich repeat containing 71 | 1q23.1
| 0.606 |
| ADPRM | ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent | 17p13.1
| 0.606 |
| HBM | hemoglobin, mu | 16p13.3
| 0.606 |
| LRRC59 | leucine rich repeat containing 59 | 17q21.33
| 0.606 |
| CCDC127 | coiled-coil domain containing 127 | 5p15.33
| 0.606 |
| E2F4 | E2F transcription factor 4, p107/p130-binding | 16q22.1
| 0.606 |
| URAD | ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase | 13q12.2
| 0.606 |
| ENTPD3 | ectonucleoside triphosphate diphosphohydrolase 3 | 3p21.3
| 0.606 |
| SAR1B | secretion associated, Ras related GTPase 1B | 5q31.1
| 0.606 |
| SAMD5 | sterile alpha motif domain containing 5 | 6q24.3
| 0.605 |
| SCO1 | SCO1 cytochrome c oxidase assembly protein | 17p13.1
| 0.605 |
| SLC26A4-AS1 | SLC26A4 antisense RNA 1 | 7q22.3
| 0.605 |
| SRP9 | signal recognition particle 9kDa | 1q42.12
| 0.605 |
| SDHA | succinate dehydrogenase complex, subunit A, flavoprotein (Fp) | 5p15
| 0.605 |
| PGM5 | phosphoglucomutase 5 | 9q13
| 0.605 |
| HS1BP3 | HCLS1 binding protein 3 | 2p24.1
| 0.605 |
| MIR3687-1 | microRNA 3687-1 | 21
| 0.605 |
| MIR3687-2 | microRNA 3687-2 | 21
| 0.605 |
| GABRA4 | gamma-aminobutyric acid (GABA) A receptor, alpha 4 | 4p12
| 0.605 |
| FGF14 | fibroblast growth factor 14 | 13q34
| 0.604 |
| SH3RF3 | SH3 domain containing ring finger 3 | 2q13
| 0.604 |
| RBL1 | retinoblastoma-like 1 | 20q11.23
| 0.604 |
| FAM162B | family with sequence similarity 162, member B | 6q22.31
| 0.604 |
| SPON1 | spondin 1, extracellular matrix protein | 11p15.2
| 0.604 |
| C15orf56 | chromosome 15 open reading frame 56 | 15q15.1
| 0.604 |
| TP73 | tumor protein p73 | 1p36.3
| 0.603 |
| RBP7 | retinol binding protein 7, cellular | 1p36.22
| 0.603 |
| CD302 | CD302 molecule | 2q24.2
| 0.603 |
| SERTM1 | serine-rich and transmembrane domain containing 1 | 13q13.3
| 0.603 |
| FOXD2-AS1 | FOXD2 antisense RNA 1 (head to head) | 1p33
| 0.603 |
| RNVU1-15 | RNA, variant U1 small nuclear 15 | 1q21.2
| 0.603 |
| PAK6 | p21 protein (Cdc42/Rac)-activated kinase 6 | 15q14
| 0.603 |
| KCNK9 | potassium channel, two pore domain subfamily K, member 9 | 8q24.3
| 0.602 |
| IGFBP7-AS1 | IGFBP7 antisense RNA 1 | 4q12
| 0.602 |
| PTGER4P2-CDK2AP2P2 | PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene | 9q13
| 0.602 |
| BMP8A | bone morphogenetic protein 8a | 1p35-p32
| 0.602 |
| NEDD4 | neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase | 15q
| 0.602 |
| NPBWR1 | neuropeptides B/W receptor 1 | 8q11.23
| 0.602 |