This regulatory network was inferred from the input dataset. The miRNAs and mRNAs are
presented as round and rectangle nodes respectively. The numerical value popped up upon mouse over the gene node is the log2 transformed fold-change of the gene expression between the two groups. All of the nodes are clickable, and the detailed information of the miRNAs/mRNAs and related cancer pathway will be displayed in another window. The edges between nodes are supported by both interactions (predicted or experimentally verified) and correlations learnt from cancer dataset. The numerical value popped up upon mouse over the edge is the correlation beat value (effect size) between the two nodes. The experimental evidences of the edges reported in previous cancer studies are highlighted by red/orange color. All of these information can be accessed by the "mouse-over" action. This network shows a full map of the miRNA-mRNA regulation of the input gene list(s), and the hub miRNAs (with the high network degree/betweenness centrality) would be the potential cancer drivers or tumor suppressors. The full result table can be accessed in the "Regulations" tab.
"miRNACancerMAP" is also a network visualization tool for users to draw their regulatory network by personal customization. Users can set the complexity of the network by limiting the number of nodes or edges. And the color of the nodes can be defined by different categories of the mRNAs and miRNAs, such as Gene-Ontology, pathway, and expression status. Users can also select to use network degree or network betweenness centrality to define the node size. And edges can be black or colored by the correlation. Purple edge means negative correlation (mostly found between miRNA and mRNA), and blue edge means positive correlation (found in PPI or miRNA-miRNA sponge effect). We can also add the protein-protein interactions (PPI) into the network. This result will show the cluster of genes regulated by some specific miRNAs. Additionally, miRNA-miRNA edges can be added by the "miRNA sponge" button, presenting some clusters of miRNAs that have the interactions via sponge effect.
Num | microRNA | Gene | miRNA log2FC | miRNA pvalue | Gene log2FC | Gene pvalue | Interaction | Correlation beta | Correlation P-value | PMID | Reported in cancer studies |
---|---|---|---|---|---|---|---|---|---|---|---|
1 | hsa-miR-125a-3p | CIRBP | 1.24 | 1.0E-5 | -0.68 | 0.00013 | miRanda | -0.13 | 2.0E-5 | NA | |
2 | hsa-miR-24-3p | CIRBP | 1 | 0 | -0.68 | 0.00013 | miRNAWalker2 validate | -0.28 | 0 | NA | |
3 | hsa-miR-338-5p | CIRBP | -0.58 | 0.04722 | -0.68 | 0.00013 | MirTarget; PITA; miRNATAP | -0.14 | 0 | NA | |
4 | hsa-miR-590-3p | CIRBP | 2.59 | 0 | -0.68 | 0.00013 | miRanda | -0.14 | 0 | NA | |
5 | hsa-miR-590-5p | CIRBP | 3.18 | 0 | -0.68 | 0.00013 | miRanda | -0.1 | 0.00028 | NA | |
6 | hsa-miR-629-3p | CIRBP | 2.37 | 0 | -0.68 | 0.00013 | mirMAP | -0.17 | 0 | NA |
Num | GO | Overlap | Size | P Value | Adj. P Value |
---|---|---|---|---|---|
1 | RNA PROCESSING | 61 | 835 | 1.087e-33 | 5.06e-30 |
2 | MRNA METABOLIC PROCESS | 53 | 611 | 8.454e-33 | 1.967e-29 |
3 | MRNA PROCESSING | 46 | 432 | 2.552e-32 | 3.958e-29 |
4 | RNA SPLICING VIA TRANSESTERIFICATION REACTIONS | 38 | 267 | 1.89e-31 | 2.199e-28 |
5 | RNA SPLICING | 42 | 367 | 8.866e-31 | 8.25e-28 |
6 | RIBONUCLEOPROTEIN COMPLEX BIOGENESIS | 29 | 440 | 7.001e-15 | 5.43e-12 |
7 | NLS BEARING PROTEIN IMPORT INTO NUCLEUS | 9 | 22 | 7.767e-13 | 5.163e-10 |
8 | MITOTIC CELL CYCLE | 34 | 766 | 2.608e-12 | 1.517e-09 |
9 | CELL CYCLE | 45 | 1316 | 4.275e-12 | 2.21e-09 |
10 | CELL CYCLE PHASE TRANSITION | 20 | 255 | 5.853e-12 | 2.723e-09 |
11 | NUCLEAR IMPORT | 15 | 129 | 1.052e-11 | 4.449e-09 |
12 | REGULATION OF CELL CYCLE | 37 | 949 | 1.152e-11 | 4.467e-09 |
13 | CELL CYCLE G1 S PHASE TRANSITION | 14 | 111 | 1.711e-11 | 5.688e-09 |
14 | G1 S TRANSITION OF MITOTIC CELL CYCLE | 14 | 111 | 1.711e-11 | 5.688e-09 |
15 | POSITIVE REGULATION OF GENE EXPRESSION | 51 | 1733 | 3.138e-11 | 9.127e-09 |
16 | CELL CYCLE PROCESS | 39 | 1081 | 3.057e-11 | 9.127e-09 |
17 | NUCLEAR TRANSPORT | 22 | 355 | 5.115e-11 | 1.4e-08 |
18 | REGULATION OF TELOMERASE RNA LOCALIZATION TO CAJAL BODY | 7 | 15 | 9.605e-11 | 2.352e-08 |
19 | POSITIVE REGULATION OF TELOMERASE RNA LOCALIZATION TO CAJAL BODY | 7 | 15 | 9.605e-11 | 2.352e-08 |
20 | PROTEIN IMPORT | 15 | 155 | 1.493e-10 | 3.475e-08 |
21 | PROTEIN LOCALIZATION TO NUCLEUS | 15 | 156 | 1.637e-10 | 3.626e-08 |
22 | PROTEIN FOLDING | 17 | 224 | 4.013e-10 | 8.487e-08 |
23 | POSTTRANSCRIPTIONAL REGULATION OF GENE EXPRESSION | 23 | 448 | 7.52e-10 | 1.521e-07 |
24 | REGULATION OF MRNA METABOLIC PROCESS | 12 | 118 | 6.103e-09 | 1.183e-06 |
25 | CELL DIVISION | 22 | 460 | 6.595e-09 | 1.227e-06 |
26 | REGULATION OF DNA REPLICATION | 13 | 161 | 2.342e-08 | 4.192e-06 |
27 | RIBONUCLEOPROTEIN COMPLEX SUBUNIT ORGANIZATION | 14 | 199 | 3.863e-08 | 6.657e-06 |
28 | PROTEIN LOCALIZATION TO ORGANELLE | 23 | 556 | 4.347e-08 | 7.224e-06 |
29 | RIBOSOME BIOGENESIS | 17 | 308 | 4.809e-08 | 7.499e-06 |
30 | MULTI ORGANISM TRANSPORT | 9 | 68 | 4.996e-08 | 7.499e-06 |
31 | MULTI ORGANISM LOCALIZATION | 9 | 68 | 4.996e-08 | 7.499e-06 |
32 | POSITIVE REGULATION OF TELOMERE MAINTENANCE VIA TELOMERE LENGTHENING | 7 | 33 | 5.402e-08 | 7.854e-06 |
33 | REGULATION OF ESTABLISHMENT OF PROTEIN LOCALIZATION TO CHROMOSOME | 5 | 11 | 6.291e-08 | 8.236e-06 |
34 | INTERSPECIES INTERACTION BETWEEN ORGANISMS | 25 | 662 | 6.372e-08 | 8.236e-06 |
35 | REGULATION OF TELOMERE MAINTENANCE VIA TELOMERE LENGTHENING | 8 | 50 | 6.126e-08 | 8.236e-06 |
36 | SYMBIOSIS ENCOMPASSING MUTUALISM THROUGH PARASITISM | 25 | 662 | 6.372e-08 | 8.236e-06 |
37 | MITOTIC NUCLEAR DIVISION | 18 | 361 | 8.944e-08 | 1.125e-05 |
38 | SPLICEOSOMAL COMPLEX ASSEMBLY | 8 | 53 | 9.835e-08 | 1.204e-05 |
39 | RNA LOCALIZATION | 13 | 185 | 1.213e-07 | 1.447e-05 |
40 | RRNA METABOLIC PROCESS | 15 | 255 | 1.333e-07 | 1.513e-05 |
41 | MACROMOLECULAR COMPLEX ASSEMBLY | 38 | 1398 | 1.323e-07 | 1.513e-05 |
42 | REGULATION OF DNA METABOLIC PROCESS | 17 | 340 | 1.986e-07 | 2.201e-05 |
43 | DNA METABOLIC PROCESS | 26 | 758 | 2.246e-07 | 2.43e-05 |
44 | DNA GEOMETRIC CHANGE | 9 | 81 | 2.341e-07 | 2.476e-05 |
45 | REGULATION OF PROTEIN LOCALIZATION TO CHROMOSOME TELOMERIC REGION | 5 | 14 | 2.655e-07 | 2.745e-05 |
46 | CELL CYCLE G2 M PHASE TRANSITION | 11 | 138 | 3.282e-07 | 3.32e-05 |
47 | REGULATION OF RNA STABILITY | 11 | 139 | 3.531e-07 | 3.496e-05 |
48 | POSITIVE REGULATION OF DNA REPLICATION | 9 | 86 | 3.938e-07 | 3.818e-05 |
49 | RNA SECONDARY STRUCTURE UNWINDING | 7 | 44 | 4.379e-07 | 4.158e-05 |
50 | ESTABLISHMENT OF PROTEIN LOCALIZATION TO ORGANELLE | 17 | 361 | 4.613e-07 | 4.287e-05 |
51 | MODULATION BY SYMBIONT OF HOST CELLULAR PROCESS | 6 | 28 | 4.699e-07 | 4.287e-05 |
52 | REGULATION OF TELOMERE MAINTENANCE | 8 | 67 | 6.354e-07 | 5.686e-05 |
53 | POSITIVE REGULATION OF BIOSYNTHETIC PROCESS | 43 | 1805 | 6.669e-07 | 5.855e-05 |
54 | POSITIVE REGULATION OF TELOMERE MAINTENANCE | 7 | 47 | 6.991e-07 | 6.024e-05 |
55 | NEGATIVE REGULATION OF PROTEIN METABOLIC PROCESS | 31 | 1087 | 8.138e-07 | 6.885e-05 |
56 | MACROMOLECULE CATABOLIC PROCESS | 28 | 926 | 9.438e-07 | 7.842e-05 |
57 | REGULATION OF RNA SPLICING | 9 | 97 | 1.104e-06 | 9.013e-05 |
58 | CELLULAR RESPONSE TO DNA DAMAGE STIMULUS | 24 | 720 | 1.126e-06 | 9.032e-05 |
59 | NCRNA PROCESSING | 17 | 386 | 1.163e-06 | 9.175e-05 |
60 | RNA 3 END PROCESSING | 9 | 98 | 1.204e-06 | 9.34e-05 |
61 | REGULATION OF TRANSFERASE ACTIVITY | 28 | 946 | 1.433e-06 | 0.0001076 |
62 | SEXUAL REPRODUCTION | 24 | 730 | 1.433e-06 | 0.0001076 |
63 | REGULATION OF CELLULAR AMIDE METABOLIC PROCESS | 16 | 354 | 1.734e-06 | 0.000128 |
64 | ORGANELLE FISSION | 19 | 496 | 2.154e-06 | 0.0001566 |
65 | REGULATION OF CHROMOSOME ORGANIZATION | 14 | 278 | 2.247e-06 | 0.0001609 |
66 | PROTEIN TARGETING | 17 | 406 | 2.31e-06 | 0.0001629 |
67 | MODULATION BY VIRUS OF HOST MORPHOLOGY OR PHYSIOLOGY | 6 | 37 | 2.673e-06 | 0.0001856 |
68 | POSITIVE REGULATION OF DNA BIOSYNTHETIC PROCESS | 7 | 59 | 3.396e-06 | 0.000232 |
69 | MULTICELLULAR ORGANISM REPRODUCTION | 24 | 768 | 3.44e-06 | 0.000232 |
70 | REPRODUCTION | 33 | 1297 | 4.184e-06 | 0.0002781 |
71 | MULTI ORGANISM REPRODUCTIVE PROCESS | 26 | 891 | 4.544e-06 | 0.0002978 |
72 | REGULATION OF MRNA SPLICING VIA SPLICEOSOME | 7 | 62 | 4.763e-06 | 0.0003078 |
73 | CHROMOSOME ORGANIZATION | 28 | 1009 | 4.924e-06 | 0.0003138 |
74 | NEGATIVE REGULATION OF CELL CYCLE | 17 | 433 | 5.451e-06 | 0.0003427 |
75 | POSITIVE REGULATION OF CHROMOSOME ORGANIZATION | 10 | 150 | 5.733e-06 | 0.0003557 |
76 | NCRNA METABOLIC PROCESS | 19 | 533 | 6.086e-06 | 0.0003726 |
77 | POSITIVE REGULATION OF RNA SPLICING | 5 | 25 | 6.392e-06 | 0.0003862 |
78 | RESPONSE TO ORGANIC CYCLIC COMPOUND | 26 | 917 | 7.578e-06 | 0.0004521 |
79 | REGULATION OF DNA BIOSYNTHETIC PROCESS | 8 | 94 | 8.441e-06 | 0.0004971 |
80 | POSITIVE REGULATION OF MRNA METABOLIC PROCESS | 6 | 45 | 8.711e-06 | 0.0005004 |
81 | MODIFICATION BY SYMBIONT OF HOST MORPHOLOGY OR PHYSIOLOGY | 6 | 45 | 8.711e-06 | 0.0005004 |
82 | CELL CYCLE CHECKPOINT | 11 | 194 | 9.242e-06 | 0.0005244 |
83 | REGULATION OF CELLULAR PROTEIN LOCALIZATION | 19 | 552 | 9.989e-06 | 0.00056 |
84 | POSITIVE REGULATION OF TELOMERASE ACTIVITY | 5 | 28 | 1.151e-05 | 0.0006357 |
85 | POSITIVE REGULATION OF PROTEIN LOCALIZATION TO NUCLEUS | 9 | 129 | 1.174e-05 | 0.0006357 |
86 | NUCLEOBASE CONTAINING COMPOUND TRANSPORT | 11 | 199 | 1.175e-05 | 0.0006357 |
87 | PROTEIN PHOSPHORYLATION | 26 | 944 | 1.26e-05 | 0.0006737 |
88 | MRNA 3 END PROCESSING | 7 | 72 | 1.302e-05 | 0.0006883 |
89 | NEGATIVE REGULATION OF CELLULAR AMIDE METABOLIC PROCESS | 9 | 131 | 1.329e-05 | 0.0006948 |
90 | RNA POLYADENYLATION | 5 | 29 | 1.379e-05 | 0.000713 |
91 | REGULATION OF PROTEIN LOCALIZATION | 26 | 950 | 1.406e-05 | 0.0007189 |
92 | DNA TEMPLATED TRANSCRIPTION TERMINATION | 8 | 101 | 1.436e-05 | 0.0007263 |
93 | CELLULAR MACROMOLECULAR COMPLEX ASSEMBLY | 22 | 727 | 1.484e-05 | 0.0007423 |
94 | RNA STABILIZATION | 5 | 31 | 1.939e-05 | 0.0009596 |
95 | CELLULAR RESPONSE TO OXYGEN CONTAINING COMPOUND | 23 | 799 | 2.078e-05 | 0.001018 |
96 | POSITIVE REGULATION OF MRNA PROCESSING | 5 | 32 | 2.277e-05 | 0.001093 |
97 | NUCLEIC ACID PHOSPHODIESTER BOND HYDROLYSIS | 12 | 254 | 2.278e-05 | 0.001093 |
98 | DNA INTEGRITY CHECKPOINT | 9 | 146 | 3.157e-05 | 0.001499 |
99 | CELLULAR RESPONSE TO STRESS | 35 | 1565 | 3.323e-05 | 0.001562 |
100 | PEPTIDYL SERINE MODIFICATION | 9 | 148 | 3.514e-05 | 0.001619 |
101 | CELLULAR RESPONSE TO HORMONE STIMULUS | 18 | 552 | 3.512e-05 | 0.001619 |
102 | CELLULAR RESPONSE TO LIPID | 16 | 457 | 4.181e-05 | 0.001889 |
103 | POSITIVE REGULATION OF CELLULAR PROTEIN LOCALIZATION | 14 | 360 | 4.149e-05 | 0.001889 |
104 | NEGATIVE REGULATION OF PROTEIN MODIFICATION PROCESS | 19 | 616 | 4.506e-05 | 0.002016 |
105 | CELLULAR COMPONENT DISASSEMBLY | 17 | 515 | 5.006e-05 | 0.002218 |
106 | REGULATION OF PROTEIN MODIFICATION BY SMALL PROTEIN CONJUGATION OR REMOVAL | 12 | 280 | 5.88e-05 | 0.002557 |
107 | REGULATION OF PROTEIN SERINE THREONINE KINASE ACTIVITY | 16 | 470 | 5.829e-05 | 0.002557 |
108 | CELLULAR MACROMOLECULE LOCALIZATION | 29 | 1234 | 7.192e-05 | 0.003099 |
109 | ANDROGEN RECEPTOR SIGNALING PATHWAY | 5 | 41 | 7.829e-05 | 0.003342 |
110 | CELLULAR RESPONSE TO ORGANIC SUBSTANCE | 38 | 1848 | 8.962e-05 | 0.003785 |
111 | REGULATION OF CYCLIN DEPENDENT PROTEIN KINASE ACTIVITY | 7 | 97 | 9.03e-05 | 0.003785 |
112 | GAMETE GENERATION | 18 | 595 | 9.178e-05 | 0.003813 |
113 | INTRACELLULAR RECEPTOR SIGNALING PATHWAY | 9 | 168 | 9.405e-05 | 0.003873 |
114 | REGULATION OF TELOMERASE ACTIVITY | 5 | 43 | 9.881e-05 | 0.004033 |
115 | CELLULAR RESPONSE TO ENDOGENOUS STIMULUS | 25 | 1008 | 0.0001024 | 0.004142 |
116 | MODIFICATION OF MORPHOLOGY OR PHYSIOLOGY OF OTHER ORGANISM | 7 | 100 | 0.0001095 | 0.004391 |
117 | NUCLEUS ORGANIZATION | 8 | 136 | 0.000121 | 0.004812 |
118 | TRANSCRIPTION FROM RNA POLYMERASE II PROMOTER | 20 | 724 | 0.0001284 | 0.005064 |
119 | NEGATIVE REGULATION OF PROTEIN MODIFICATION BY SMALL PROTEIN CONJUGATION OR REMOVAL | 8 | 139 | 0.0001408 | 0.005458 |
120 | REGULATION OF PROTEIN LOCALIZATION TO NUCLEUS | 10 | 218 | 0.0001403 | 0.005458 |
121 | MEMBRANE DISASSEMBLY | 5 | 47 | 0.000152 | 0.005798 |
122 | NUCLEAR ENVELOPE DISASSEMBLY | 5 | 47 | 0.000152 | 0.005798 |
123 | REGULATION OF PROTEIN STABILITY | 10 | 221 | 0.0001568 | 0.005933 |
124 | MRNA SPLICE SITE SELECTION | 4 | 26 | 0.0001671 | 0.006219 |
125 | REGULATION OF CELLULAR SENESCENCE | 4 | 26 | 0.0001671 | 0.006219 |
126 | REGULATION OF CELLULAR RESPONSE TO HEAT | 6 | 76 | 0.0001768 | 0.00653 |
127 | POSITIVE REGULATION OF DNA METABOLIC PROCESS | 9 | 185 | 0.0001951 | 0.006941 |
128 | MICROTUBULE BASED PROCESS | 16 | 522 | 0.0001954 | 0.006941 |
129 | DNA CATABOLIC PROCESS | 4 | 27 | 0.0001945 | 0.006941 |
130 | PROTEASOMAL PROTEIN CATABOLIC PROCESS | 11 | 271 | 0.0001921 | 0.006941 |
131 | RNA CATABOLIC PROCESS | 10 | 227 | 0.0001949 | 0.006941 |
132 | REGULATION OF NERVOUS SYSTEM DEVELOPMENT | 20 | 750 | 0.0002048 | 0.007165 |
133 | DNA CONFORMATION CHANGE | 11 | 273 | 0.0002048 | 0.007165 |
134 | NUCLEAR EXPORT | 8 | 147 | 0.0002069 | 0.007185 |
135 | NEGATIVE REGULATION OF NITROGEN COMPOUND METABOLIC PROCESS | 32 | 1517 | 0.0002207 | 0.007515 |
136 | RESPONSE TO ENDOGENOUS STIMULUS | 31 | 1450 | 0.0002211 | 0.007515 |
137 | NEGATIVE REGULATION OF PHOSPHORYLATION | 14 | 422 | 0.0002213 | 0.007515 |
138 | CELLULAR CATABOLIC PROCESS | 29 | 1322 | 0.0002346 | 0.007911 |
139 | POSITIVE REGULATION OF TRANSCRIPTION FROM RNA POLYMERASE II PROMOTER | 24 | 1004 | 0.0002455 | 0.008218 |
140 | PROTEIN COMPLEX SUBUNIT ORGANIZATION | 32 | 1527 | 0.0002481 | 0.008247 |
141 | DNA REPAIR | 15 | 480 | 0.000252 | 0.008317 |
142 | PROTEIN IMPORT INTO NUCLEUS TRANSLOCATION | 4 | 29 | 0.0002588 | 0.008479 |
143 | REGULATION OF BINDING | 11 | 283 | 0.0002789 | 0.009075 |
144 | MALE GAMETE GENERATION | 15 | 486 | 0.0002876 | 0.009294 |
145 | NEGATIVE REGULATION OF MOLECULAR FUNCTION | 25 | 1079 | 0.0002908 | 0.009331 |
Num | GO | Overlap | Size | P Value | Adj. P Value |
---|---|---|---|---|---|
1 | RNA BINDING | 98 | 1598 | 6.817e-50 | 6.333e-47 |
2 | POLY A RNA BINDING | 84 | 1170 | 4.236e-47 | 1.968e-44 |
3 | RIBONUCLEOTIDE BINDING | 70 | 1860 | 2.319e-21 | 7.182e-19 |
4 | ADENYL NUCLEOTIDE BINDING | 61 | 1514 | 6.918e-20 | 1.607e-17 |
5 | NUCLEAR LOCALIZATION SEQUENCE BINDING | 9 | 21 | 4.633e-13 | 8.608e-11 |
6 | RNA HELICASE ACTIVITY | 12 | 67 | 6.965e-12 | 1.078e-09 |
7 | HELICASE ACTIVITY | 16 | 153 | 1.093e-11 | 1.451e-09 |
8 | HYDROLASE ACTIVITY ACTING ON ACID ANHYDRIDES | 34 | 820 | 1.688e-11 | 1.961e-09 |
9 | PURINE NTP DEPENDENT HELICASE ACTIVITY | 13 | 98 | 4.807e-11 | 4.962e-09 |
10 | CYCLIN DEPENDENT PROTEIN KINASE ACTIVITY | 9 | 34 | 7.317e-11 | 6.797e-09 |
11 | SIGNAL SEQUENCE BINDING | 9 | 39 | 2.82e-10 | 2.382e-08 |
12 | POLY PURINE TRACT BINDING | 7 | 19 | 7.248e-10 | 5.612e-08 |
13 | SINGLE STRANDED RNA BINDING | 10 | 69 | 3.575e-09 | 2.555e-07 |
14 | PROTEIN SERINE THREONINE KINASE ACTIVITY | 21 | 445 | 1.869e-08 | 1.24e-06 |
15 | HEAT SHOCK PROTEIN BINDING | 10 | 89 | 4.427e-08 | 2.723e-06 |
16 | ATPASE ACTIVITY | 20 | 427 | 4.689e-08 | 2.723e-06 |
17 | ATPASE ACTIVITY COUPLED | 17 | 313 | 6.074e-08 | 3.319e-06 |
18 | MRNA BINDING | 12 | 155 | 1.306e-07 | 6.74e-06 |
19 | PROTEIN TRANSPORTER ACTIVITY | 9 | 99 | 1.313e-06 | 6.418e-05 |
20 | CYCLIN BINDING | 5 | 19 | 1.475e-06 | 6.852e-05 |
21 | TRANSFERASE ACTIVITY TRANSFERRING PHOSPHORUS CONTAINING GROUPS | 28 | 992 | 3.571e-06 | 0.000158 |
22 | ENZYME BINDING | 40 | 1737 | 4.08e-06 | 0.0001723 |
23 | PROTEIN KINASE ACTIVITY | 21 | 640 | 6.975e-06 | 0.0002817 |
24 | MACROMOLECULAR COMPLEX BINDING | 34 | 1399 | 7.872e-06 | 0.0003047 |
25 | UNFOLDED PROTEIN BINDING | 8 | 100 | 1.335e-05 | 0.000496 |
26 | DNA HELICASE ACTIVITY | 6 | 53 | 2.284e-05 | 0.0008161 |
27 | TRANSCRIPTION FACTOR BINDING | 17 | 524 | 6.197e-05 | 0.002132 |
28 | SINGLE STRANDED DNA BINDING | 7 | 93 | 6.907e-05 | 0.002213 |
29 | DOUBLE STRANDED RNA BINDING | 6 | 64 | 6.756e-05 | 0.002213 |
30 | GTPASE ACTIVITY | 11 | 246 | 8.207e-05 | 0.002542 |
31 | KINASE ACTIVITY | 22 | 842 | 0.0001309 | 0.003924 |
32 | MRNA 3 UTR BINDING | 5 | 48 | 0.0001682 | 0.004883 |
33 | HSP90 PROTEIN BINDING | 4 | 27 | 0.0001945 | 0.005475 |
34 | CHROMATIN BINDING | 14 | 435 | 0.0003011 | 0.008227 |
35 | POLY A BINDING | 3 | 13 | 0.0003325 | 0.008825 |
Num | GO | Overlap | Size | P Value | Adj. P Value |
---|---|---|---|---|---|
1 | RIBONUCLEOPROTEIN COMPLEX | 52 | 721 | 2.891e-28 | 1.688e-25 |
2 | SPLICEOSOMAL COMPLEX | 26 | 172 | 2.071e-22 | 6.049e-20 |
3 | CATALYTIC STEP 2 SPLICEOSOME | 17 | 89 | 8.098e-17 | 1.576e-14 |
4 | NUCLEOLUS | 41 | 848 | 5.561e-16 | 8.119e-14 |
5 | NUCLEAR BODY | 21 | 349 | 2.47e-10 | 2.885e-08 |
6 | NUCLEAR PORE | 11 | 77 | 6.793e-10 | 6.612e-08 |
7 | RIBONUCLEOPROTEIN GRANULE | 14 | 148 | 8.42e-10 | 7.024e-08 |
8 | MICROTUBULE CYTOSKELETON | 34 | 1068 | 1.59e-08 | 1.031e-06 |
9 | NUCLEOPLASM PART | 27 | 708 | 1.477e-08 | 1.031e-06 |
10 | NUCLEAR SPECK | 14 | 194 | 2.802e-08 | 1.637e-06 |
11 | NUCLEAR ENVELOPE | 18 | 416 | 7.202e-07 | 3.824e-05 |
12 | CYCLIN DEPENDENT PROTEIN KINASE HOLOENZYME COMPLEX | 6 | 31 | 8.937e-07 | 4.349e-05 |
13 | CYTOPLASMIC STRESS GRANULE | 6 | 32 | 1.09e-06 | 4.897e-05 |
14 | CYTOSKELETAL PART | 36 | 1436 | 2.013e-06 | 8.398e-05 |
15 | CHROMOSOME | 26 | 880 | 3.635e-06 | 0.0001391 |
16 | SMALL NUCLEAR RIBONUCLEOPROTEIN COMPLEX | 7 | 60 | 3.81e-06 | 0.0001391 |
17 | MICROTUBULE ORGANIZING CENTER | 21 | 623 | 4.618e-06 | 0.0001586 |
18 | PRP19 COMPLEX | 4 | 13 | 8.926e-06 | 0.0002744 |
19 | CHROMATOID BODY | 4 | 13 | 8.926e-06 | 0.0002744 |
20 | SPINDLE | 13 | 289 | 1.744e-05 | 0.0005092 |
21 | CAJAL BODY | 6 | 52 | 2.044e-05 | 0.0005684 |
22 | CENTROSOME | 17 | 487 | 2.489e-05 | 0.0006607 |
23 | CYTOSKELETON | 41 | 1967 | 3.286e-05 | 0.0008344 |
24 | PROTEIN KINASE COMPLEX | 7 | 90 | 5.599e-05 | 0.001362 |
25 | SPINDLE POLE | 8 | 126 | 7.082e-05 | 0.001654 |
26 | CHROMATIN | 15 | 441 | 0.0001004 | 0.002256 |
27 | MICROTUBULE | 14 | 405 | 0.0001449 | 0.003133 |
28 | NUCLEAR CHROMOSOME | 16 | 523 | 0.0001997 | 0.004021 |
29 | ENDOPLASMIC RETICULUM CHAPERONE COMPLEX | 3 | 11 | 0.0001949 | 0.004021 |
30 | TRANSFERASE COMPLEX | 19 | 703 | 0.0002503 | 0.004873 |
31 | U2 TYPE SPLICEOSOMAL COMPLEX | 4 | 31 | 0.000337 | 0.006349 |
32 | NUCLEAR PERIPHERY | 7 | 121 | 0.0003566 | 0.006507 |
33 | NUCLEAR CYCLIN DEPENDENT PROTEIN KINASE HOLOENZYME COMPLEX | 3 | 15 | 0.0005205 | 0.009212 |
Num | Pathway | Pathview | Overlap | Size | P Value | Adj. P Value |
---|---|---|---|---|---|---|
1 | Cell_cycle_hsa04110 | 12 | 124 | 1.076e-08 | 5.595e-07 | |
2 | Oocyte_meiosis_hsa04114 | 9 | 124 | 8.516e-06 | 0.0002214 | |
3 | Gap_junction_hsa04540 | 7 | 88 | 4.845e-05 | 0.0008397 | |
4 | Cellular_senescence_hsa04218 | 9 | 160 | 6.459e-05 | 0.0008397 | |
5 | FoxO_signaling_pathway_hsa04068 | 8 | 132 | 9.823e-05 | 0.001022 | |
6 | Adherens_junction_hsa04520 | 6 | 72 | 0.000131 | 0.001135 | |
7 | p53_signaling_pathway_hsa04115 | 5 | 68 | 0.0008592 | 0.006383 | |
8 | Wnt_signaling_pathway_hsa04310 | 6 | 146 | 0.005249 | 0.03412 | |
9 | PI3K_Akt_signaling_pathway_hsa04151 | 9 | 352 | 0.01501 | 0.08674 | |
10 | Apoptosis_hsa04210 | 5 | 138 | 0.01742 | 0.09057 | |
11 | Phagosome_hsa04145 | 5 | 152 | 0.02522 | 0.1148 | |
12 | Hippo_signaling_pathway_hsa04390 | 5 | 154 | 0.02649 | 0.1148 | |
13 | Tight_junction_hsa04530 | 5 | 170 | 0.03812 | 0.1458 | |
14 | Hippo_signaling_pathway_multiple_species_hsa04392 | 2 | 29 | 0.03927 | 0.1458 | |
15 | TGF_beta_signaling_pathway_hsa04350 | 3 | 84 | 0.06337 | 0.2137 | |
16 | Focal_adhesion_hsa04510 | 5 | 199 | 0.06614 | 0.2137 | |
17 | Ferroptosis_hsa04216 | 2 | 40 | 0.06986 | 0.2137 | |
18 | Regulation_of_actin_cytoskeleton_hsa04810 | 5 | 208 | 0.07667 | 0.2215 | |
19 | Hedgehog_signaling_pathway_hsa04340 | 2 | 47 | 0.09223 | 0.2431 | |
20 | HIF_1_signaling_pathway_hsa04066 | 3 | 100 | 0.09512 | 0.2431 | |
21 | cGMP_PKG_signaling_pathway_hsa04022 | 4 | 163 | 0.1018 | 0.2431 | |
22 | MAPK_signaling_pathway_hsa04010 | 6 | 295 | 0.1028 | 0.2431 | |
23 | VEGF_signaling_pathway_hsa04370 | 2 | 59 | 0.1344 | 0.3039 | |
24 | mTOR_signaling_pathway_hsa04150 | 3 | 151 | 0.2257 | 0.489 | |
25 | NF_kappa_B_signaling_pathway_hsa04064 | 2 | 95 | 0.2756 | 0.5733 | |
26 | TNF_signaling_pathway_hsa04668 | 2 | 108 | 0.3277 | 0.6553 | |
27 | Rap1_signaling_pathway_hsa04015 | 3 | 206 | 0.3873 | 0.746 | |
28 | Signaling_pathways_regulating_pluripotency_of_stem_cells_hsa04550 | 2 | 139 | 0.4464 | 0.8005 | |
29 | Endocytosis_hsa04144 | 3 | 244 | 0.4953 | 0.8529 | |
30 | Calcium_signaling_pathway_hsa04020 | 2 | 182 | 0.5898 | 0.9255 |