TISIDB

Summary
Symbol	APOBEC3B
Name	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B
Aliases	PHRBNL; FLJ21201; phorbolin 3; ARCD3; DJ742C19.2; bK150C2.2; apolipoprotein B mRNA editing enzyme catalytic ......
Chromosomal Location	22q13.1-q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Basic function annotation. > Subcellular Location, Domain and Function > Gene Ontology > KEGG and Reactome Pathway

> Subcellular Location, Domain and Function [ TOP ]
Subcellular Location	Nucleus
Domain	PF08210 APOBEC-like N-terminal domain
Function	DNA deaminase (cytidine deaminase) which acts as an inhibitor of retrovirus replication and retrotransposon mobility via deaminase-dependent and -independent mechanisms. After the penetration of retroviral nucleocapsids into target cells of infection and the initiation of reverse transcription, it can induce the conversion of cytosine to uracil in the minus-sense single-strand viral DNA, leading to G-to-A hypermutations in the subsequent plus-strand viral DNA. The resultant detrimental levels of mutations in the proviral genome, along with a deamination-independent mechanism that works prior to the proviral integration, together exert efficient antiretroviral effects in infected target cells. Selectively targets single-stranded DNA and does not deaminate double-stranded DNA or single-or double-stranded RNA. Exhibits antiviral activity against simian immunodeficiency virus (SIV), hepatitis B virus (HBV) and human T-cell leukemia virus type 1 (HTLV-1) and may inhibit the mobility of LTR and non-LTR retrotransposons.

> Gene Ontology [ TOP ]
Biological Process	GO:0009615 response to virus GO:0010528 regulation of transposition GO:0010529 negative regulation of transposition GO:0032196 transposition GO:0051607 defense response to virus GO:0098542 defense response to other organism
Molecular Function	GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines GO:0019239 deaminase activity GO:0047844 deoxycytidine deaminase activity
Cellular Component	-

> KEGG and Reactome Pathway [ TOP ]
KEGG	-
Reactome	R-HSA-75094: Formation of the Editosome R-HSA-74160: Gene Expression R-HSA-75072: mRNA Editing R-HSA-72200: mRNA Editing

Summary
Symbol	APOBEC3B
Name	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B
Aliases	PHRBNL; FLJ21201; phorbolin 3; ARCD3; DJ742C19.2; bK150C2.2; apolipoprotein B mRNA editing enzyme catalytic ......
Chromosomal Location	22q13.1-q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Literatures that report relations between APOBEC3B and anti-tumor immunity. The specific mechanism were also collected if the literature reports that a gene specifically promotes or inhibits the infiltration or function of T/NK cells.

> Text Mining

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Literatures describing the relation between APOBEC3B and anti-tumor immunity in human cancer.

PMID	Cancer type	Relation to immunity	Evidence sentences
27233495	Breast Carcinoma	Inhibit immunity	Analysis of breast cancers from METABRIC revealed breast cancers from APOBEC3B deletion carriers to have significantly higher abundance of tumour-infiltrating immune cells.

Summary
Symbol	APOBEC3B
Name	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B
Aliases	PHRBNL; FLJ21201; phorbolin 3; ARCD3; DJ742C19.2; bK150C2.2; apolipoprotein B mRNA editing enzyme catalytic ......
Chromosomal Location	22q13.1-q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	High-throughput screening data (e.g. CRISPR-Cas9, shRNA and RNAi) for T cell-mediated killing. Genetic screen techniques can identify mechanisms of tumor cell resistance (e.g., PTPN2) and sensitivity (e.g., APLNR) to killing by cytotoxic T cells, the central effectors of anti-tumor immunity. After comprehensively searching, eight groups of screening data sets were collected in the current database. In this tab, users can check whether their selected genes cause resistance or increase sensitivity to T cell-mediated killing in various data sets.

> High-throughput Screening

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Statistical results of APOBEC3B in screening data sets for detecting immune reponses.

PMID	Screening System	Cancer Type	Cell Line	Data Set	Statistical Results	Relation to immunity
29301958	CRISPR-Cas9	melanoma	B16F10	Pmel-1 T cell	NA/NS	NA/NS
29301958	CRISPR-Cas9	melanoma	B16F10	OT-1 T cell	NA/NS	NA/NS
28783722	CRISPR-Cas9	melanoma	Mel624	2CT-CRISPR	NA/NS	NA/NS
28723893	CRISPR-Cas9	melanoma	B16	GVAX+Anti-PD1	NA/NS	NA/NS
28723893	CRISPR-Cas9	melanoma	B16	GVAX	NA/NS	NA/NS
25691366	RNAi	Breast cancer	MCF7	Luc-CTL assay	NA/NS	NA/NS
24476824	shRNA	melanoma	B16	Primary screen	NA/NS	NA/NS
24476824	shRNA	melanoma	B16	Secondary screen	NA/NS	NA/NS

Summary
Symbol	APOBEC3B
Name	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B
Aliases	PHRBNL; FLJ21201; phorbolin 3; ARCD3; DJ742C19.2; bK150C2.2; apolipoprotein B mRNA editing enzyme catalytic ......
Chromosomal Location	22q13.1-q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Transcriptomic and genomic profiling of pre-treated tumor biopsies from responders and non-responders to immunotherapy. These data were used to identify signatures and mechanisms of response to checkpoint blockade (e.g., anti-PDL1 and anti-PD1). One example is that mutations in the gene PBRM1 benefit clinical survival of patients with clear cell renal cell carcinoma. After comprehensively searching, we collected 5 and 6 of transcriptomic and genomic data sets, respectively. In this tab, users can check whether their selected genes have significant difference of expression or mutation between responders and non-responders in various data sets. > Expression difference between responders and non-responders > Mutation difference between responders and non-responders

> Expression difference between responders and non-responders

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Points in the above scatter plot represent the expression difference of APOBEC3B in various data sets.

No	PMID	Cancer type	Group	Drug	# Res	# NRes	Log2 (Fold Change)	P value
1	26997480	Melanoma	all	Anti-PD-1 (pembrolizumab and nivolumab)	14	12	-0.549	0.0924
2	26997480	Melanoma	MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	6	5	-1.092	0.375
3	26997480	Melanoma	non-MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	8	7	-0.157	0.876
4	28552987	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	9	16	-0.283	0.524
5	28552987	Urothelial cancer	smoking	Anti-PD-L1 (atezolizumab)	5	9	-0.368	0.817
6	28552987	Urothelial cancer	non-smoking	Anti-PD-L1 (atezolizumab)	4	7	-0.174	0.932
7	29033130	Melanoma	all	Anti-PD-1 (nivolumab)	26	23	0.226	0.525
8	29033130	Melanoma	NIV3-PROG	Anti-PD-1 (nivolumab)	15	11	0.222	0.809
9	29033130	Melanoma	NIV3-NAIVE	Anti-PD-1 (nivolumab)	11	12	0.331	0.714
10	29301960	Clear cell renal cell carcinoma (ccRCC)	all	Anti-PD-1 (nivolumab)	4	8	0.012	0.99
11	29301960	Clear cell renal cell carcinoma (ccRCC)	VEGFRi	Anti-PD-1 (nivolumab)	2	0	0	1
12	29301960	Clear cell renal cell carcinoma (ccRCC)	non-VEGFRi	Anti-PD-1 (nivolumab)	2	8	-0.323	0.834
13	29443960	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	68	230	0.6	0.00749

> Mutation difference between responders and non-responders

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Points in the above scatter plot represent the mutation difference of APOBEC3B in various data sets.

No	PMID	Cancer type	Group	Drug	# Res	# NRes	% Mut/Res	% Mut/NRes	% Diff (R vs NR)	Pval
1	25765070	Non-small cell lung cancer (NSCLC)	all	Anti-PD-1 (pembrolizumab)	14	17	7.1	0	7.1	0.452
2	25765070	Non-small cell lung cancer (NSCLC)	smoking	Anti-PD-1 (pembrolizumab)	10	3	10	0	10	1
3	25765070	Non-small cell lung cancer (NSCLC)	non-smoking	Anti-PD-1 (pembrolizumab)	4	14	0	0	0	1
4	26359337	Melanoma	all	Anti-CTLA-4 (ipilimumab)	27	73	0	2.7	-2.7	1
5	26359337	Melanoma	BRAFi	Anti-CTLA-4 (ipilimumab)	0	14	0	0	0	1
6	26359337	Melanoma	non-BRAFi	Anti-CTLA-4 (ipilimumab)	27	59	0	3.4	-3.4	1
7	26997480	Melanoma	all	Anti-PD-1 (pembrolizumab and nivolumab)	21	17	0	0	0	1
8	26997480	Melanoma	MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	8	6	0	0	0	1
9	26997480	Melanoma	non-MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	13	11	0	0	0	1
10	28552987	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	9	16	11.1	0	11.1	0.36
11	28552987	Urothelial cancer	smoking	Anti-PD-L1 (atezolizumab)	5	9	20	0	20	0.357
12	28552987	Urothelial cancer	non-smoking	Anti-PD-L1 (atezolizumab)	4	7	0	0	0	1
13	29033130	Melanoma	all	Anti-PD-1 (nivolumab)	38	27	2.6	3.7	-1.1	1
14	29033130	Melanoma	NIV3-PROG	Anti-PD-1 (nivolumab)	22	13	0	7.7	-7.7	0.371
15	29033130	Melanoma	NIV3-NAIVE	Anti-PD-1 (nivolumab)	16	14	6.2	0	6.2	1
16	29301960	Clear cell renal cell carcinoma (ccRCC)	all	Anti-PD-1 (nivolumab)	11	13	0	0	0	1
17	29301960	Clear cell renal cell carcinoma (ccRCC)	VEGFRi	Anti-PD-1 (nivolumab)	6	1	0	0	0	1
18	29301960	Clear cell renal cell carcinoma (ccRCC)	non-VEGFRi	Anti-PD-1 (nivolumab)	5	12	0	0	0	1

Summary
Symbol	APOBEC3B
Name	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B
Aliases	PHRBNL; FLJ21201; phorbolin 3; ARCD3; DJ742C19.2; bK150C2.2; apolipoprotein B mRNA editing enzyme catalytic ......
Chromosomal Location	22q13.1-q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between abundance of tumor-infiltrating lymphocytes (TILs) and expression, copy number, methylation, or mutation of APOBEC3B. The immune-related signatures of 28 TIL types from Charoentong's study, which can be viewed in the download page. For each cancer type, the relative abundance of TILs were inferred by using gene set variation analysis (GSVA) based on gene expression profile. In this tab, users can examine which kinds of TILs might be regulated by the current gene.

> Lymphocyte [ TOP ]

Summary
Symbol	APOBEC3B
Name	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B
Aliases	PHRBNL; FLJ21201; phorbolin 3; ARCD3; DJ742C19.2; bK150C2.2; apolipoprotein B mRNA editing enzyme catalytic ......
Chromosomal Location	22q13.1-q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between three kinds of immunomodulators and expression, copy number, methylation, or mutation of APOBEC3B. These immunomo-dulators were collected from Charoentong's study. In this tab, users can examine which immunomodulators might be regulated by APOBEC3B. > Immunoinhibitor > Immunostimulator > MHC molecule

> Immunoinhibitor [ TOP ]

> Immunostimulator [ TOP ]

> MHC molecule [ TOP ]

Summary
Symbol	APOBEC3B
Name	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B
Aliases	PHRBNL; FLJ21201; phorbolin 3; ARCD3; DJ742C19.2; bK150C2.2; apolipoprotein B mRNA editing enzyme catalytic ......
Chromosomal Location	22q13.1-q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between chemokines (or receptors) and expression, copy number, methylation, or mutation of APOBEC3B. In this tab, users can examine which chemokines (or receptors) might be regulated by the current gene. > Chemokine > Receptor

> Chemokine [ TOP ]

> Receptor [ TOP ]

Summary
Symbol	APOBEC3B
Name	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B
Aliases	PHRBNL; FLJ21201; phorbolin 3; ARCD3; DJ742C19.2; bK150C2.2; apolipoprotein B mRNA editing enzyme catalytic ......
Chromosomal Location	22q13.1-q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Distribution of APOBEC3B expression across immune and molecular subtypes. > Immune subtype > Molecular subtype

> Immune subtype [ TOP ]

> Molecular subtype [ TOP ]

Summary
Symbol	APOBEC3B
Name	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B
Aliases	PHRBNL; FLJ21201; phorbolin 3; ARCD3; DJ742C19.2; bK150C2.2; apolipoprotein B mRNA editing enzyme catalytic ......
Chromosomal Location	22q13.1-q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Associations between APOBEC3B and clinical features. > Overall survival analysis > Cancer stage > Tumor grade

> Overall survival [ TOP ]

> Stage [ TOP ]

> Grade [ TOP ]

Summary
Symbol	APOBEC3B
Name	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B
Aliases	PHRBNL; FLJ21201; phorbolin 3; ARCD3; DJ742C19.2; bK150C2.2; apolipoprotein B mRNA editing enzyme catalytic ......
Chromosomal Location	22q13.1-q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Drugs targeting APOBEC3B collected from DrugBank database.

> Drugs from DrugBank database [ TOP ]
There is no record.

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