TISIDB

Summary
Symbol	DNAJC13
Name	DnaJ (Hsp40) homolog, subfamily C, member 13
Aliases	RME8; KIAA0678; PARK21; DnaJ domain-containing protein RME-8; RME-8; required for receptor-mediated endocyto ......
Chromosomal Location	3q22.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Basic function annotation. > Subcellular Location, Domain and Function > Gene Ontology > KEGG and Reactome Pathway

> Subcellular Location, Domain and Function [ TOP ]
Subcellular Location	Early endosome Early endosome membrane Peripheral membrane protein Endosome membrane
Domain	PF00226 DnaJ domain PF14237 Domain of unknown function (DUF4339)
Function	Involved in membrane trafficking through early endosomes, such as the early endosome to recycling endosome transport implicated in the recycling of transferrin and the early endosome to late endosome transport implicated in degradation of EGF and EGFR (PubMed:18256511, PubMed:18307993). Involved in the regulation of endosomal membrane tubulation and regulates th dynamics of SNX1 on the endosomal membrane; via association with WASHC2 may link the WASH complex to the retromer SNX-BAR subcomplex (PubMed:24643499).

> Gene Ontology [ TOP ]
Biological Process	GO:0001503 ossification GO:0001649 osteoblast differentiation GO:0007032 endosome organization GO:0007033 vacuole organization GO:0007034 vacuolar transport GO:0016197 endosomal transport GO:0016482 cytosolic transport GO:0032386 regulation of intracellular transport GO:0045022 early endosome to late endosome transport GO:0060627 regulation of vesicle-mediated transport GO:0061502 early endosome to recycling endosome transport GO:0098927 vesicle-mediated transport between endosomal compartments GO:1902954 regulation of early endosome to recycling endosome transport GO:1903335 regulation of vacuolar transport GO:1903649 regulation of cytoplasmic transport GO:2000641 regulation of early endosome to late endosome transport
Molecular Function	-
Cellular Component	GO:0005765 lysosomal membrane GO:0005769 early endosome GO:0010008 endosome membrane GO:0031901 early endosome membrane GO:0044440 endosomal part GO:0071203 WASH complex GO:0098852 lytic vacuole membrane

> KEGG and Reactome Pathway [ TOP ]
KEGG	-
Reactome	R-HSA-168256: Immune System R-HSA-168249: Innate Immune System R-HSA-6798695: Neutrophil degranulation

Summary
Symbol	DNAJC13
Name	DnaJ (Hsp40) homolog, subfamily C, member 13
Aliases	RME8; KIAA0678; PARK21; DnaJ domain-containing protein RME-8; RME-8; required for receptor-mediated endocyto ......
Chromosomal Location	3q22.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Literatures that report relations between DNAJC13 and anti-tumor immunity. The specific mechanism were also collected if the literature reports that a gene specifically promotes or inhibits the infiltration or function of T/NK cells.

> Text Mining [ TOP ]
There is no record.

Summary
Symbol	DNAJC13
Name	DnaJ (Hsp40) homolog, subfamily C, member 13
Aliases	RME8; KIAA0678; PARK21; DnaJ domain-containing protein RME-8; RME-8; required for receptor-mediated endocyto ......
Chromosomal Location	3q22.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	High-throughput screening data (e.g. CRISPR-Cas9, shRNA and RNAi) for T cell-mediated killing. Genetic screen techniques can identify mechanisms of tumor cell resistance (e.g., PTPN2) and sensitivity (e.g., APLNR) to killing by cytotoxic T cells, the central effectors of anti-tumor immunity. After comprehensively searching, eight groups of screening data sets were collected in the current database. In this tab, users can check whether their selected genes cause resistance or increase sensitivity to T cell-mediated killing in various data sets.

> High-throughput Screening

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Statistical results of DNAJC13 in screening data sets for detecting immune reponses.

PMID	Screening System	Cancer Type	Cell Line	Data Set	Statistical Results	Relation to immunity
29301958	CRISPR-Cas9	melanoma	B16F10	Pmel-1 T cell	NA/NS	NA/NS
29301958	CRISPR-Cas9	melanoma	B16F10	OT-1 T cell	NA/NS	NA/NS
28783722	CRISPR-Cas9	melanoma	Mel624	2CT-CRISPR	NA/NS	NA/NS
28723893	CRISPR-Cas9	melanoma	B16	GVAX+Anti-PD1	NA/NS	NA/NS
28723893	CRISPR-Cas9	melanoma	B16	GVAX	NA/NS	NA/NS
25691366	RNAi	Breast cancer	MCF7	Luc-CTL assay	NA/NS	NA/NS
24476824	shRNA	melanoma	B16	Primary screen	NA/NS	NA/NS
24476824	shRNA	melanoma	B16	Secondary screen	NA/NS	NA/NS

Summary
Symbol	DNAJC13
Name	DnaJ (Hsp40) homolog, subfamily C, member 13
Aliases	RME8; KIAA0678; PARK21; DnaJ domain-containing protein RME-8; RME-8; required for receptor-mediated endocyto ......
Chromosomal Location	3q22.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Transcriptomic and genomic profiling of pre-treated tumor biopsies from responders and non-responders to immunotherapy. These data were used to identify signatures and mechanisms of response to checkpoint blockade (e.g., anti-PDL1 and anti-PD1). One example is that mutations in the gene PBRM1 benefit clinical survival of patients with clear cell renal cell carcinoma. After comprehensively searching, we collected 5 and 6 of transcriptomic and genomic data sets, respectively. In this tab, users can check whether their selected genes have significant difference of expression or mutation between responders and non-responders in various data sets. > Expression difference between responders and non-responders > Mutation difference between responders and non-responders

> Expression difference between responders and non-responders

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Points in the above scatter plot represent the expression difference of DNAJC13 in various data sets.

No	PMID	Cancer type	Group	Drug	# Res	# NRes	Log2 (Fold Change)	P value
1	26997480	Melanoma	all	Anti-PD-1 (pembrolizumab and nivolumab)	14	12	-0.031	0.912
2	26997480	Melanoma	MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	6	5	0.285	0.862
3	26997480	Melanoma	non-MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	8	7	-0.26	0.827
4	28552987	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	9	16	0.045	0.889
5	28552987	Urothelial cancer	smoking	Anti-PD-L1 (atezolizumab)	5	9	-0.102	0.967
6	28552987	Urothelial cancer	non-smoking	Anti-PD-L1 (atezolizumab)	4	7	0.233	0.942
7	29033130	Melanoma	all	Anti-PD-1 (nivolumab)	26	23	0.104	0.822
8	29033130	Melanoma	NIV3-PROG	Anti-PD-1 (nivolumab)	15	11	0.183	0.925
9	29033130	Melanoma	NIV3-NAIVE	Anti-PD-1 (nivolumab)	11	12	-0.013	0.995
10	29301960	Clear cell renal cell carcinoma (ccRCC)	all	Anti-PD-1 (nivolumab)	4	8	0.352	0.781
11	29301960	Clear cell renal cell carcinoma (ccRCC)	VEGFRi	Anti-PD-1 (nivolumab)	2	0	0	1
12	29301960	Clear cell renal cell carcinoma (ccRCC)	non-VEGFRi	Anti-PD-1 (nivolumab)	2	8	1.418	0.419
13	29443960	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	68	230	0.039	0.436

> Mutation difference between responders and non-responders

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Points in the above scatter plot represent the mutation difference of DNAJC13 in various data sets.

No	PMID	Cancer type	Group	Drug	# Res	# NRes	% Mut/Res	% Mut/NRes	% Diff (R vs NR)	Pval
1	25765070	Non-small cell lung cancer (NSCLC)	all	Anti-PD-1 (pembrolizumab)	14	17	0	5.9	-5.9	1
2	25765070	Non-small cell lung cancer (NSCLC)	smoking	Anti-PD-1 (pembrolizumab)	10	3	0	0	0	1
3	25765070	Non-small cell lung cancer (NSCLC)	non-smoking	Anti-PD-1 (pembrolizumab)	4	14	0	7.1	-7.1	1
4	26359337	Melanoma	all	Anti-CTLA-4 (ipilimumab)	27	73	11.1	0	11.1	0.0181
5	26359337	Melanoma	BRAFi	Anti-CTLA-4 (ipilimumab)	0	14	0	0	0	1
6	26359337	Melanoma	non-BRAFi	Anti-CTLA-4 (ipilimumab)	27	59	11.1	0	11.1	0.0286
7	26997480	Melanoma	all	Anti-PD-1 (pembrolizumab and nivolumab)	21	17	9.5	0	9.5	0.492
8	26997480	Melanoma	MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	8	6	12.5	0	12.5	1
9	26997480	Melanoma	non-MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	13	11	7.7	0	7.7	1
10	28552987	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	9	16	0	6.2	-6.2	1
11	28552987	Urothelial cancer	smoking	Anti-PD-L1 (atezolizumab)	5	9	0	0	0	1
12	28552987	Urothelial cancer	non-smoking	Anti-PD-L1 (atezolizumab)	4	7	0	14.3	-14.3	1
13	29033130	Melanoma	all	Anti-PD-1 (nivolumab)	38	27	0	3.7	-3.7	0.415
14	29033130	Melanoma	NIV3-PROG	Anti-PD-1 (nivolumab)	22	13	0	7.7	-7.7	0.371
15	29033130	Melanoma	NIV3-NAIVE	Anti-PD-1 (nivolumab)	16	14	0	0	0	1
16	29301960	Clear cell renal cell carcinoma (ccRCC)	all	Anti-PD-1 (nivolumab)	11	13	0	0	0	1
17	29301960	Clear cell renal cell carcinoma (ccRCC)	VEGFRi	Anti-PD-1 (nivolumab)	6	1	0	0	0	1
18	29301960	Clear cell renal cell carcinoma (ccRCC)	non-VEGFRi	Anti-PD-1 (nivolumab)	5	12	0	0	0	1

Summary
Symbol	DNAJC13
Name	DnaJ (Hsp40) homolog, subfamily C, member 13
Aliases	RME8; KIAA0678; PARK21; DnaJ domain-containing protein RME-8; RME-8; required for receptor-mediated endocyto ......
Chromosomal Location	3q22.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between abundance of tumor-infiltrating lymphocytes (TILs) and expression, copy number, methylation, or mutation of DNAJC13. The immune-related signatures of 28 TIL types from Charoentong's study, which can be viewed in the download page. For each cancer type, the relative abundance of TILs were inferred by using gene set variation analysis (GSVA) based on gene expression profile. In this tab, users can examine which kinds of TILs might be regulated by the current gene.

> Lymphocyte [ TOP ]

Summary
Symbol	DNAJC13
Name	DnaJ (Hsp40) homolog, subfamily C, member 13
Aliases	RME8; KIAA0678; PARK21; DnaJ domain-containing protein RME-8; RME-8; required for receptor-mediated endocyto ......
Chromosomal Location	3q22.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between three kinds of immunomodulators and expression, copy number, methylation, or mutation of DNAJC13. These immunomo-dulators were collected from Charoentong's study. In this tab, users can examine which immunomodulators might be regulated by DNAJC13. > Immunoinhibitor > Immunostimulator > MHC molecule

> Immunoinhibitor [ TOP ]

> Immunostimulator [ TOP ]

> MHC molecule [ TOP ]

Summary
Symbol	DNAJC13
Name	DnaJ (Hsp40) homolog, subfamily C, member 13
Aliases	RME8; KIAA0678; PARK21; DnaJ domain-containing protein RME-8; RME-8; required for receptor-mediated endocyto ......
Chromosomal Location	3q22.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between chemokines (or receptors) and expression, copy number, methylation, or mutation of DNAJC13. In this tab, users can examine which chemokines (or receptors) might be regulated by the current gene. > Chemokine > Receptor

> Chemokine [ TOP ]

> Receptor [ TOP ]

Summary
Symbol	DNAJC13
Name	DnaJ (Hsp40) homolog, subfamily C, member 13
Aliases	RME8; KIAA0678; PARK21; DnaJ domain-containing protein RME-8; RME-8; required for receptor-mediated endocyto ......
Chromosomal Location	3q22.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Distribution of DNAJC13 expression across immune and molecular subtypes. > Immune subtype > Molecular subtype

> Immune subtype [ TOP ]

> Molecular subtype [ TOP ]

Summary
Symbol	DNAJC13
Name	DnaJ (Hsp40) homolog, subfamily C, member 13
Aliases	RME8; KIAA0678; PARK21; DnaJ domain-containing protein RME-8; RME-8; required for receptor-mediated endocyto ......
Chromosomal Location	3q22.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Associations between DNAJC13 and clinical features. > Overall survival analysis > Cancer stage > Tumor grade

> Overall survival [ TOP ]

> Stage [ TOP ]

> Grade [ TOP ]

Summary
Symbol	DNAJC13
Name	DnaJ (Hsp40) homolog, subfamily C, member 13
Aliases	RME8; KIAA0678; PARK21; DnaJ domain-containing protein RME-8; RME-8; required for receptor-mediated endocyto ......
Chromosomal Location	3q22.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Drugs targeting DNAJC13 collected from DrugBank database.

> Drugs from DrugBank database [ TOP ]
There is no record.

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