TISIDB

Summary
Symbol	ELMO1
Name	engulfment and cell motility 1
Aliases	KIAA0281; ELMO-1; engulfment and cell motility 1 (ced-12 homolog, C. elegans); ced-12 homolog 1; Protein ced ......
Chromosomal Location	7p14.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Basic function annotation. > Subcellular Location, Domain and Function > Gene Ontology > KEGG and Reactome Pathway

> Subcellular Location, Domain and Function [ TOP ]
Subcellular Location	Cytoplasm. Cell membrane. Note=Translocation to plasma membrane seems to be mediated by DOCK1 and CRK.
Domain	PF11841 Domain of unknown function (DUF3361) PF04727 ELMO/CED-12 family PF16457 Pleckstrin homology domain
Function	Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in association with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.

> Gene Ontology [ TOP ]
Biological Process	GO:0002429 immune response-activating cell surface receptor signaling pathway GO:0002431 Fc receptor mediated stimulatory signaling pathway GO:0002433 immune response-regulating cell surface receptor signaling pathway involved in phagocytosis GO:0002697 regulation of immune effector process GO:0002757 immune response-activating signal transduction GO:0002764 immune response-regulating signaling pathway GO:0002768 immune response-regulating cell surface receptor signaling pathway GO:0002831 regulation of response to biotic stimulus GO:0006909 phagocytosis GO:0006911 phagocytosis, engulfment GO:0007265 Ras protein signal transduction GO:0009615 response to virus GO:0010324 membrane invagination GO:0016601 Rac protein signal transduction GO:0038093 Fc receptor signaling pathway GO:0038094 Fc-gamma receptor signaling pathway GO:0038096 Fc-gamma receptor signaling pathway involved in phagocytosis GO:0043900 regulation of multi-organism process GO:0043903 regulation of symbiosis, encompassing mutualism through parasitism GO:0048010 vascular endothelial growth factor receptor signaling pathway GO:0050688 regulation of defense response to virus GO:0050690 regulation of defense response to virus by virus GO:0050792 regulation of viral process GO:0051607 defense response to virus GO:0098542 defense response to other organism GO:0099024 plasma membrane invagination
Molecular Function	GO:0005085 guanyl-nucleotide exchange factor activity GO:0017124 SH3 domain binding
Cellular Component	GO:0032045 guanyl-nucleotide exchange factor complex

> KEGG and Reactome Pathway [ TOP ]
KEGG	hsa04062 Chemokine signaling pathway
Reactome	R-HSA-1643685: Disease R-HSA-2029480: Fcgamma receptor (FCGR) dependent phagocytosis R-HSA-162906: HIV Infection R-HSA-162909: Host Interactions of HIV factors R-HSA-168256: Immune System R-HSA-5663205: Infectious disease R-HSA-168249: Innate Immune System R-HSA-164944: Nef and signal transduction R-HSA-8849471: PTK6 Regulates RHO GTPases, RAS GTPase and MAP kinases R-HSA-2029482: Regulation of actin dynamics for phagocytic cup formation R-HSA-162582: Signal Transduction R-HSA-8848021: Signaling by PTK6 R-HSA-194138: Signaling by VEGF R-HSA-164952: The role of Nef in HIV-1 replication and disease pathogenesis R-HSA-4420097: VEGFA-VEGFR2 Pathway

> KEGG and Reactome Pathway

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KEGG

hsa04062 Chemokine signaling pathway

Reactome

R-HSA-1643685: Disease
R-HSA-2029480: Fcgamma receptor (FCGR) dependent phagocytosis
R-HSA-162906: HIV Infection
R-HSA-162909: Host Interactions of HIV factors
R-HSA-168256: Immune System
R-HSA-5663205: Infectious disease
R-HSA-168249: Innate Immune System
R-HSA-164944: Nef and signal transduction
R-HSA-8849471: PTK6 Regulates RHO GTPases, RAS GTPase and MAP kinases
R-HSA-2029482: Regulation of actin dynamics for phagocytic cup formation
R-HSA-162582: Signal Transduction
R-HSA-8848021: Signaling by PTK6
R-HSA-194138: Signaling by VEGF
R-HSA-164952: The role of Nef in HIV-1 replication and disease pathogenesis
R-HSA-4420097: VEGFA-VEGFR2 Pathway

Summary
Symbol	ELMO1
Name	engulfment and cell motility 1
Aliases	KIAA0281; ELMO-1; engulfment and cell motility 1 (ced-12 homolog, C. elegans); ced-12 homolog 1; Protein ced ......
Chromosomal Location	7p14.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Literatures that report relations between ELMO1 and anti-tumor immunity. The specific mechanism were also collected if the literature reports that a gene specifically promotes or inhibits the infiltration or function of T/NK cells.

> Text Mining [ TOP ]
There is no record.

Summary
Symbol	ELMO1
Name	engulfment and cell motility 1
Aliases	KIAA0281; ELMO-1; engulfment and cell motility 1 (ced-12 homolog, C. elegans); ced-12 homolog 1; Protein ced ......
Chromosomal Location	7p14.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	High-throughput screening data (e.g. CRISPR-Cas9, shRNA and RNAi) for T cell-mediated killing. Genetic screen techniques can identify mechanisms of tumor cell resistance (e.g., PTPN2) and sensitivity (e.g., APLNR) to killing by cytotoxic T cells, the central effectors of anti-tumor immunity. After comprehensively searching, eight groups of screening data sets were collected in the current database. In this tab, users can check whether their selected genes cause resistance or increase sensitivity to T cell-mediated killing in various data sets.

> High-throughput Screening

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Statistical results of ELMO1 in screening data sets for detecting immune reponses.

PMID	Screening System	Cancer Type	Cell Line	Data Set	Statistical Results	Relation to immunity
29301958	CRISPR-Cas9	melanoma	B16F10	Pmel-1 T cell	NA/NS	NA/NS
29301958	CRISPR-Cas9	melanoma	B16F10	OT-1 T cell	NA/NS	NA/NS
28783722	CRISPR-Cas9	melanoma	Mel624	2CT-CRISPR	NA/NS	NA/NS
28723893	CRISPR-Cas9	melanoma	B16	GVAX+Anti-PD1	NA/NS	NA/NS
28723893	CRISPR-Cas9	melanoma	B16	GVAX	NA/NS	NA/NS
25691366	RNAi	Breast cancer	MCF7	Luc-CTL assay	NA/NS	NA/NS
24476824	shRNA	melanoma	B16	Primary screen	NA/NS	NA/NS
24476824	shRNA	melanoma	B16	Secondary screen	NA/NS	NA/NS

Summary
Symbol	ELMO1
Name	engulfment and cell motility 1
Aliases	KIAA0281; ELMO-1; engulfment and cell motility 1 (ced-12 homolog, C. elegans); ced-12 homolog 1; Protein ced ......
Chromosomal Location	7p14.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Transcriptomic and genomic profiling of pre-treated tumor biopsies from responders and non-responders to immunotherapy. These data were used to identify signatures and mechanisms of response to checkpoint blockade (e.g., anti-PDL1 and anti-PD1). One example is that mutations in the gene PBRM1 benefit clinical survival of patients with clear cell renal cell carcinoma. After comprehensively searching, we collected 5 and 6 of transcriptomic and genomic data sets, respectively. In this tab, users can check whether their selected genes have significant difference of expression or mutation between responders and non-responders in various data sets. > Expression difference between responders and non-responders > Mutation difference between responders and non-responders

> Expression difference between responders and non-responders

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Points in the above scatter plot represent the expression difference of ELMO1 in various data sets.

No	PMID	Cancer type	Group	Drug	# Res	# NRes	Log2 (Fold Change)	P value
1	26997480	Melanoma	all	Anti-PD-1 (pembrolizumab and nivolumab)	14	12	-0.22	0.569
2	26997480	Melanoma	MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	6	5	-0.382	0.689
3	26997480	Melanoma	non-MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	8	7	-0.108	0.897
4	28552987	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	9	16	-0.21	0.522
5	28552987	Urothelial cancer	smoking	Anti-PD-L1 (atezolizumab)	5	9	-0.358	0.859
6	28552987	Urothelial cancer	non-smoking	Anti-PD-L1 (atezolizumab)	4	7	-0.023	0.993
7	29033130	Melanoma	all	Anti-PD-1 (nivolumab)	26	23	0.435	0.336
8	29033130	Melanoma	NIV3-PROG	Anti-PD-1 (nivolumab)	15	11	0.645	0.581
9	29033130	Melanoma	NIV3-NAIVE	Anti-PD-1 (nivolumab)	11	12	0.194	0.882
10	29301960	Clear cell renal cell carcinoma (ccRCC)	all	Anti-PD-1 (nivolumab)	4	8	1.012	0.415
11	29301960	Clear cell renal cell carcinoma (ccRCC)	VEGFRi	Anti-PD-1 (nivolumab)	2	0	0	1
12	29301960	Clear cell renal cell carcinoma (ccRCC)	non-VEGFRi	Anti-PD-1 (nivolumab)	2	8	1.369	0.467
13	29443960	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	68	230	-0.27	0.0645

> Mutation difference between responders and non-responders

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Points in the above scatter plot represent the mutation difference of ELMO1 in various data sets.

No	PMID	Cancer type	Group	Drug	# Res	# NRes	% Mut/Res	% Mut/NRes	% Diff (R vs NR)	Pval
1	25765070	Non-small cell lung cancer (NSCLC)	all	Anti-PD-1 (pembrolizumab)	14	17	0	0	0	1
2	25765070	Non-small cell lung cancer (NSCLC)	smoking	Anti-PD-1 (pembrolizumab)	10	3	0	0	0	1
3	25765070	Non-small cell lung cancer (NSCLC)	non-smoking	Anti-PD-1 (pembrolizumab)	4	14	0	0	0	1
4	26359337	Melanoma	all	Anti-CTLA-4 (ipilimumab)	27	73	22.2	4.1	18.1	0.011
5	26359337	Melanoma	BRAFi	Anti-CTLA-4 (ipilimumab)	0	14	0	0	0	1
6	26359337	Melanoma	non-BRAFi	Anti-CTLA-4 (ipilimumab)	27	59	22.2	5.1	17.1	0.0245
7	26997480	Melanoma	all	Anti-PD-1 (pembrolizumab and nivolumab)	21	17	9.5	17.6	-8.1	0.64
8	26997480	Melanoma	MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	8	6	25	0	25	0.473
9	26997480	Melanoma	non-MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	13	11	0	27.3	-27.3	0.0815
10	28552987	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	9	16	11.1	0	11.1	0.36
11	28552987	Urothelial cancer	smoking	Anti-PD-L1 (atezolizumab)	5	9	0	0	0	1
12	28552987	Urothelial cancer	non-smoking	Anti-PD-L1 (atezolizumab)	4	7	25	0	25	0.364
13	29033130	Melanoma	all	Anti-PD-1 (nivolumab)	38	27	13.2	0	13.2	0.0705
14	29033130	Melanoma	NIV3-PROG	Anti-PD-1 (nivolumab)	22	13	13.6	0	13.6	0.279
15	29033130	Melanoma	NIV3-NAIVE	Anti-PD-1 (nivolumab)	16	14	12.5	0	12.5	0.485
16	29301960	Clear cell renal cell carcinoma (ccRCC)	all	Anti-PD-1 (nivolumab)	11	13	0	0	0	1
17	29301960	Clear cell renal cell carcinoma (ccRCC)	VEGFRi	Anti-PD-1 (nivolumab)	6	1	0	0	0	1
18	29301960	Clear cell renal cell carcinoma (ccRCC)	non-VEGFRi	Anti-PD-1 (nivolumab)	5	12	0	0	0	1

Summary
Symbol	ELMO1
Name	engulfment and cell motility 1
Aliases	KIAA0281; ELMO-1; engulfment and cell motility 1 (ced-12 homolog, C. elegans); ced-12 homolog 1; Protein ced ......
Chromosomal Location	7p14.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between abundance of tumor-infiltrating lymphocytes (TILs) and expression, copy number, methylation, or mutation of ELMO1. The immune-related signatures of 28 TIL types from Charoentong's study, which can be viewed in the download page. For each cancer type, the relative abundance of TILs were inferred by using gene set variation analysis (GSVA) based on gene expression profile. In this tab, users can examine which kinds of TILs might be regulated by the current gene.

> Lymphocyte [ TOP ]

Summary
Symbol	ELMO1
Name	engulfment and cell motility 1
Aliases	KIAA0281; ELMO-1; engulfment and cell motility 1 (ced-12 homolog, C. elegans); ced-12 homolog 1; Protein ced ......
Chromosomal Location	7p14.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between three kinds of immunomodulators and expression, copy number, methylation, or mutation of ELMO1. These immunomo-dulators were collected from Charoentong's study. In this tab, users can examine which immunomodulators might be regulated by ELMO1. > Immunoinhibitor > Immunostimulator > MHC molecule

> Immunoinhibitor [ TOP ]

> Immunostimulator [ TOP ]

> MHC molecule [ TOP ]

Summary
Symbol	ELMO1
Name	engulfment and cell motility 1
Aliases	KIAA0281; ELMO-1; engulfment and cell motility 1 (ced-12 homolog, C. elegans); ced-12 homolog 1; Protein ced ......
Chromosomal Location	7p14.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between chemokines (or receptors) and expression, copy number, methylation, or mutation of ELMO1. In this tab, users can examine which chemokines (or receptors) might be regulated by the current gene. > Chemokine > Receptor

> Chemokine [ TOP ]

> Receptor [ TOP ]

Summary
Symbol	ELMO1
Name	engulfment and cell motility 1
Aliases	KIAA0281; ELMO-1; engulfment and cell motility 1 (ced-12 homolog, C. elegans); ced-12 homolog 1; Protein ced ......
Chromosomal Location	7p14.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Distribution of ELMO1 expression across immune and molecular subtypes. > Immune subtype > Molecular subtype

> Immune subtype [ TOP ]

> Molecular subtype [ TOP ]

Summary
Symbol	ELMO1
Name	engulfment and cell motility 1
Aliases	KIAA0281; ELMO-1; engulfment and cell motility 1 (ced-12 homolog, C. elegans); ced-12 homolog 1; Protein ced ......
Chromosomal Location	7p14.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Associations between ELMO1 and clinical features. > Overall survival analysis > Cancer stage > Tumor grade

> Overall survival [ TOP ]

> Stage [ TOP ]

> Grade [ TOP ]

Summary
Symbol	ELMO1
Name	engulfment and cell motility 1
Aliases	KIAA0281; ELMO-1; engulfment and cell motility 1 (ced-12 homolog, C. elegans); ced-12 homolog 1; Protein ced ......
Chromosomal Location	7p14.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Drugs targeting ELMO1 collected from DrugBank database.

> Drugs from DrugBank database [ TOP ]
There is no record.

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