Summary | |
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Symbol | GCSAM |
Name | germinal center-associated, signaling and motility |
Aliases | MGC40441; HGAL; human germinal center-associated lymphoma; GCET2; germinal center expressed transcript 2; GC ...... |
Chromosomal Location | 3q13.13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Basic function annotation. > Subcellular Location, Domain and Function > Gene Ontology > KEGG and Reactome Pathway |
Subcellular Location | Cytoplasm. Cell membrane. Note=It relocalizes from the cytoplasm to podosome-like structures upon cell treatment with IL6. |
Domain |
PF15666 Germinal center-associated lymphoma |
Function |
Involved in the negative regulation of lymphocyte motility. It mediates the migration-inhibitory effects of IL6. Serves as a positive regulator of the RhoA signaling pathway. Enhancement of RhoA activation results in inhibition of lymphocyte and lymphoma cell motility by activation of its downstream effector ROCK. Is a regulator of B-cell receptor signaling, that acts through SYK kinase activation. |
Biological Process |
GO:0002429 immune response-activating cell surface receptor signaling pathway GO:0002683 negative regulation of immune system process GO:0002685 regulation of leukocyte migration GO:0002686 negative regulation of leukocyte migration GO:0002757 immune response-activating signal transduction GO:0002764 immune response-regulating signaling pathway GO:0002768 immune response-regulating cell surface receptor signaling pathway GO:0030336 negative regulation of cell migration GO:0040013 negative regulation of locomotion GO:0050851 antigen receptor-mediated signaling pathway GO:0050853 B cell receptor signaling pathway GO:0050854 regulation of antigen receptor-mediated signaling pathway GO:0050855 regulation of B cell receptor signaling pathway GO:0050900 leukocyte migration GO:0051271 negative regulation of cellular component movement GO:0072676 lymphocyte migration GO:2000146 negative regulation of cell motility GO:2000401 regulation of lymphocyte migration GO:2000402 negative regulation of lymphocyte migration |
Molecular Function |
GO:0003779 actin binding GO:0017022 myosin binding GO:0045159 myosin II binding |
Cellular Component | - |
KEGG | - |
Reactome | - |
Summary | |
---|---|
Symbol | GCSAM |
Name | germinal center-associated, signaling and motility |
Aliases | MGC40441; HGAL; human germinal center-associated lymphoma; GCET2; germinal center expressed transcript 2; GC ...... |
Chromosomal Location | 3q13.13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content | Literatures that report relations between GCSAM and anti-tumor immunity. The specific mechanism were also collected if the literature reports that a gene specifically promotes or inhibits the infiltration or function of T/NK cells. |
There is no record. |
Summary | |
---|---|
Symbol | GCSAM |
Name | germinal center-associated, signaling and motility |
Aliases | MGC40441; HGAL; human germinal center-associated lymphoma; GCET2; germinal center expressed transcript 2; GC ...... |
Chromosomal Location | 3q13.13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content | High-throughput screening data (e.g. CRISPR-Cas9, shRNA and RNAi) for T cell-mediated killing. Genetic screen techniques can identify mechanisms of tumor cell resistance (e.g., PTPN2) and sensitivity (e.g., APLNR) to killing by cytotoxic T cells, the central effectors of anti-tumor immunity. After comprehensively searching, eight groups of screening data sets were collected in the current database. In this tab, users can check whether their selected genes cause resistance or increase sensitivity to T cell-mediated killing in various data sets. |
> High-throughput Screening
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Statistical results of GCSAM in screening data sets for detecting immune reponses.
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Summary | |
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Symbol | GCSAM |
Name | germinal center-associated, signaling and motility |
Aliases | MGC40441; HGAL; human germinal center-associated lymphoma; GCET2; germinal center expressed transcript 2; GC ...... |
Chromosomal Location | 3q13.13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Transcriptomic and genomic profiling of pre-treated tumor biopsies from responders and non-responders to immunotherapy. These data were used to identify signatures and mechanisms of response to checkpoint blockade (e.g., anti-PDL1 and anti-PD1). One example is that mutations in the gene PBRM1 benefit clinical survival of patients with clear cell renal cell carcinoma. After comprehensively searching, we collected 5 and 6 of transcriptomic and genomic data sets, respectively. In this tab, users can check whether their selected genes have significant difference of expression or mutation between responders and non-responders in various data sets. > Expression difference between responders and non-responders > Mutation difference between responders and non-responders |
Points in the above scatter plot represent the expression difference of GCSAM in various data sets.
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Points in the above scatter plot represent the mutation difference of GCSAM in various data sets.
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Summary | |
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Symbol | GCSAM |
Name | germinal center-associated, signaling and motility |
Aliases | MGC40441; HGAL; human germinal center-associated lymphoma; GCET2; germinal center expressed transcript 2; GC ...... |
Chromosomal Location | 3q13.13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Relations between abundance of tumor-infiltrating lymphocytes (TILs) and expression, copy number, methylation, or mutation of GCSAM. The immune-related signatures of 28 TIL types from Charoentong's study, which can be viewed in the download page. For each cancer type, the relative abundance of TILs were inferred by using gene set variation analysis (GSVA) based on gene expression profile. In this tab, users can examine which kinds of TILs might be regulated by the current gene. |
Summary | |
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Symbol | GCSAM |
Name | germinal center-associated, signaling and motility |
Aliases | MGC40441; HGAL; human germinal center-associated lymphoma; GCET2; germinal center expressed transcript 2; GC ...... |
Chromosomal Location | 3q13.13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Relations between three kinds of immunomodulators and expression, copy number, methylation, or mutation of GCSAM. These immunomo-dulators were collected from Charoentong's study. In this tab, users can examine which immunomodulators might be regulated by GCSAM. > Immunoinhibitor > Immunostimulator > MHC molecule |
Summary | |
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Symbol | GCSAM |
Name | germinal center-associated, signaling and motility |
Aliases | MGC40441; HGAL; human germinal center-associated lymphoma; GCET2; germinal center expressed transcript 2; GC ...... |
Chromosomal Location | 3q13.13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Relations between chemokines (or receptors) and expression, copy number, methylation, or mutation of GCSAM. In this tab, users can examine which chemokines (or receptors) might be regulated by the current gene. > Chemokine > Receptor |
Summary | |
---|---|
Symbol | GCSAM |
Name | germinal center-associated, signaling and motility |
Aliases | MGC40441; HGAL; human germinal center-associated lymphoma; GCET2; germinal center expressed transcript 2; GC ...... |
Chromosomal Location | 3q13.13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Distribution of GCSAM expression across immune and molecular subtypes. > Immune subtype > Molecular subtype |
Summary | |
---|---|
Symbol | GCSAM |
Name | germinal center-associated, signaling and motility |
Aliases | MGC40441; HGAL; human germinal center-associated lymphoma; GCET2; germinal center expressed transcript 2; GC ...... |
Chromosomal Location | 3q13.13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Associations between GCSAM and clinical features. > Overall survival analysis > Cancer stage > Tumor grade |
Summary | |
---|---|
Symbol | GCSAM |
Name | germinal center-associated, signaling and motility |
Aliases | MGC40441; HGAL; human germinal center-associated lymphoma; GCET2; germinal center expressed transcript 2; GC ...... |
Chromosomal Location | 3q13.13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content | Drugs targeting GCSAM collected from DrugBank database. |
There is no record. |