Browse GTPBP3

Summary
SymbolGTPBP3
NameGTP binding protein 3 (mitochondrial)
Aliases THDF1; GTPBG3; MTGP1; FLJ14700; COXPD23; mitochondrial GTP-binding protein 1; tRNA modification GTPase GTPBP ......
Chromosomal Location19p13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Basic function annotation.
> Subcellular Location, Domain and Function
> Gene Ontology
> KEGG and Reactome Pathway
> Subcellular Location, Domain and Function
 
Subcellular Location Mitochondrion
Domain PF01926 50S ribosome-binding GTPase
PF12631 MnmE helical domain
PF10396 GTP-binding protein TrmE N-terminus
Function

GTPase involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U34) of the wobble uridine base in mitochondrial tRNAs.

> Gene Ontology
 
Biological Process GO:0001510 RNA methylation
GO:0002097 tRNA wobble base modification
GO:0002098 tRNA wobble uridine modification
GO:0006399 tRNA metabolic process
GO:0006400 tRNA modification
GO:0008033 tRNA processing
GO:0009451 RNA modification
GO:0030488 tRNA methylation
GO:0032259 methylation
GO:0034470 ncRNA processing
GO:0043414 macromolecule methylation
Molecular Function GO:0003924 GTPase activity
GO:0005525 GTP binding
GO:0019001 guanyl nucleotide binding
GO:0032561 guanyl ribonucleotide binding
Cellular Component -
> KEGG and Reactome Pathway
 
KEGG -
Reactome R-HSA-74160: Gene Expression
R-HSA-6787450: tRNA modification in the mitochondrion
R-HSA-72306: tRNA processing
Summary
SymbolGTPBP3
NameGTP binding protein 3 (mitochondrial)
Aliases THDF1; GTPBG3; MTGP1; FLJ14700; COXPD23; mitochondrial GTP-binding protein 1; tRNA modification GTPase GTPBP ......
Chromosomal Location19p13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Literatures that report relations between GTPBP3 and anti-tumor immunity. The specific mechanism were also collected if the literature reports that a gene specifically promotes or inhibits the infiltration or function of T/NK cells.
> Text Mining
 

There is no record.

Summary
SymbolGTPBP3
NameGTP binding protein 3 (mitochondrial)
Aliases THDF1; GTPBG3; MTGP1; FLJ14700; COXPD23; mitochondrial GTP-binding protein 1; tRNA modification GTPase GTPBP ......
Chromosomal Location19p13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content High-throughput screening data (e.g. CRISPR-Cas9, shRNA and RNAi) for T cell-mediated killing. Genetic screen techniques can identify mechanisms of tumor cell resistance (e.g., PTPN2) and sensitivity (e.g., APLNR) to killing by cytotoxic T cells, the central effectors of anti-tumor immunity. After comprehensively searching, eight groups of screening data sets were collected in the current database. In this tab, users can check whether their selected genes cause resistance or increase sensitivity to T cell-mediated killing in various data sets.
> High-throughput Screening
  Statistical results of GTPBP3 in screening data sets for detecting immune reponses.
PMID Screening System Cancer Type Cell Line Data Set Statistical Results Relation to immunity
29301958CRISPR-Cas9 melanomaB16F10Pmel-1 T cell NA/NS NA/NS
29301958CRISPR-Cas9 melanomaB16F10OT-1 T cell NA/NS NA/NS
28783722CRISPR-Cas9 melanomaMel6242CT-CRISPR Second most enriched score: 0.58 Sensitive to T cell-mediated killing
28723893CRISPR-Cas9 melanomaB16GVAX+Anti-PD1 NA/NS NA/NS
28723893CRISPR-Cas9 melanomaB16GVAX NA/NS NA/NS
25691366RNAiBreast cancerMCF7Luc-CTL assay NA/NS NA/NS
24476824shRNAmelanomaB16Primary screen NA/NS NA/NS
24476824shRNAmelanomaB16Secondary screen NA/NS NA/NS
Summary
SymbolGTPBP3
NameGTP binding protein 3 (mitochondrial)
Aliases THDF1; GTPBG3; MTGP1; FLJ14700; COXPD23; mitochondrial GTP-binding protein 1; tRNA modification GTPase GTPBP ......
Chromosomal Location19p13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Transcriptomic and genomic profiling of pre-treated tumor biopsies from responders and non-responders to immunotherapy. These data were used to identify signatures and mechanisms of response to checkpoint blockade (e.g., anti-PDL1 and anti-PD1). One example is that mutations in the gene PBRM1 benefit clinical survival of patients with clear cell renal cell carcinoma. After comprehensively searching, we collected 5 and 6 of transcriptomic and genomic data sets, respectively. In this tab, users can check whether their selected genes have significant difference of expression or mutation between responders and non-responders in various data sets.
> Expression difference between responders and non-responders
> Mutation difference between responders and non-responders
> Expression difference between responders and non-responders
 
Points in the above scatter plot represent the expression difference of GTPBP3 in various data sets.
No PMID Cancer type Group Drug # Res # NRes Log2 (Fold Change) P value Anno
126997480MelanomaallAnti-PD-1 (pembrolizumab and nivolumab)1412-0.2390.3
226997480MelanomaMAPKiAnti-PD-1 (pembrolizumab and nivolumab)65-0.3340.835
326997480Melanomanon-MAPKiAnti-PD-1 (pembrolizumab and nivolumab)87-0.1710.887
428552987Urothelial cancerallAnti-PD-L1 (atezolizumab) 9160.2650.516
528552987Urothelial cancersmokingAnti-PD-L1 (atezolizumab) 590.4960.805
628552987Urothelial cancernon-smokingAnti-PD-L1 (atezolizumab) 47-0.0310.99
729033130MelanomaallAnti-PD-1 (nivolumab) 26230.0870.768
829033130MelanomaNIV3-PROGAnti-PD-1 (nivolumab) 1511-0.0830.94
929033130MelanomaNIV3-NAIVEAnti-PD-1 (nivolumab) 11120.3030.798
1029301960Clear cell renal cell carcinoma (ccRCC)allAnti-PD-1 (nivolumab) 480.0950.928
1129301960Clear cell renal cell carcinoma (ccRCC)VEGFRiAnti-PD-1 (nivolumab) 2001
1229301960Clear cell renal cell carcinoma (ccRCC)non-VEGFRiAnti-PD-1 (nivolumab) 280.1230.934
1329443960Urothelial cancerallAnti-PD-L1 (atezolizumab) 682300.0130.885
> Mutation difference between responders and non-responders
 
Points in the above scatter plot represent the mutation difference of GTPBP3 in various data sets.
No PMID Cancer type Group Drug # Res # NRes % Mut/Res % Mut/NRes % Diff (R vs NR) Pval Anno
125765070Non-small cell lung cancer (NSCLC)allAnti-PD-1 (pembrolizumab) 14170001
225765070Non-small cell lung cancer (NSCLC)smokingAnti-PD-1 (pembrolizumab) 1030001
325765070Non-small cell lung cancer (NSCLC)non-smokingAnti-PD-1 (pembrolizumab) 4140001
426359337MelanomaallAnti-CTLA-4 (ipilimumab) 277301.4-1.41
526359337MelanomaBRAFiAnti-CTLA-4 (ipilimumab) 0140001
626359337Melanomanon-BRAFiAnti-CTLA-4 (ipilimumab) 275901.7-1.71
726997480MelanomaallAnti-PD-1 (pembrolizumab and nivolumab)21179.55.93.61
826997480MelanomaMAPKiAnti-PD-1 (pembrolizumab and nivolumab)8612.5012.51
926997480Melanomanon-MAPKiAnti-PD-1 (pembrolizumab and nivolumab)13117.79.1-1.41
1028552987Urothelial cancerallAnti-PD-L1 (atezolizumab) 91611.1011.10.36
1128552987Urothelial cancersmokingAnti-PD-L1 (atezolizumab) 59200200.357
1228552987Urothelial cancernon-smokingAnti-PD-L1 (atezolizumab) 470001
1329033130MelanomaallAnti-PD-1 (nivolumab) 38272.602.61
1429033130MelanomaNIV3-PROGAnti-PD-1 (nivolumab) 22130001
1529033130MelanomaNIV3-NAIVEAnti-PD-1 (nivolumab) 16146.206.21
1629301960Clear cell renal cell carcinoma (ccRCC)allAnti-PD-1 (nivolumab) 11130001
1729301960Clear cell renal cell carcinoma (ccRCC)VEGFRiAnti-PD-1 (nivolumab) 610001
1829301960Clear cell renal cell carcinoma (ccRCC)non-VEGFRiAnti-PD-1 (nivolumab) 5120001
Summary
SymbolGTPBP3
NameGTP binding protein 3 (mitochondrial)
Aliases THDF1; GTPBG3; MTGP1; FLJ14700; COXPD23; mitochondrial GTP-binding protein 1; tRNA modification GTPase GTPBP ......
Chromosomal Location19p13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Relations between abundance of tumor-infiltrating lymphocytes (TILs) and expression, copy number, methylation, or mutation of GTPBP3. The immune-related signatures of 28 TIL types from Charoentong's study, which can be viewed in the download page. For each cancer type, the relative abundance of TILs were inferred by using gene set variation analysis (GSVA) based on gene expression profile. In this tab, users can examine which kinds of TILs might be regulated by the current gene.
> Lymphocyte
 
Summary
SymbolGTPBP3
NameGTP binding protein 3 (mitochondrial)
Aliases THDF1; GTPBG3; MTGP1; FLJ14700; COXPD23; mitochondrial GTP-binding protein 1; tRNA modification GTPase GTPBP ......
Chromosomal Location19p13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Relations between three kinds of immunomodulators and expression, copy number, methylation, or mutation of GTPBP3. These immunomo-dulators were collected from Charoentong's study. In this tab, users can examine which immunomodulators might be regulated by GTPBP3.
> Immunoinhibitor
> Immunostimulator
> MHC molecule
> Immunoinhibitor
 
> Immunostimulator
 
> MHC molecule
 
Summary
SymbolGTPBP3
NameGTP binding protein 3 (mitochondrial)
Aliases THDF1; GTPBG3; MTGP1; FLJ14700; COXPD23; mitochondrial GTP-binding protein 1; tRNA modification GTPase GTPBP ......
Chromosomal Location19p13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Relations between chemokines (or receptors) and expression, copy number, methylation, or mutation of GTPBP3. In this tab, users can examine which chemokines (or receptors) might be regulated by the current gene.
> Chemokine
> Receptor
> Chemokine
 
> Receptor
 
Summary
SymbolGTPBP3
NameGTP binding protein 3 (mitochondrial)
Aliases THDF1; GTPBG3; MTGP1; FLJ14700; COXPD23; mitochondrial GTP-binding protein 1; tRNA modification GTPase GTPBP ......
Chromosomal Location19p13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Distribution of GTPBP3 expression across immune and molecular subtypes.
> Immune subtype
> Molecular subtype
> Immune subtype
 
> Molecular subtype
 
Summary
SymbolGTPBP3
NameGTP binding protein 3 (mitochondrial)
Aliases THDF1; GTPBG3; MTGP1; FLJ14700; COXPD23; mitochondrial GTP-binding protein 1; tRNA modification GTPase GTPBP ......
Chromosomal Location19p13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Associations between GTPBP3 and clinical features.
> Overall survival analysis
> Cancer stage
> Tumor grade
> Overall survival
 
> Stage
 
> Grade
 
Summary
SymbolGTPBP3
NameGTP binding protein 3 (mitochondrial)
Aliases THDF1; GTPBG3; MTGP1; FLJ14700; COXPD23; mitochondrial GTP-binding protein 1; tRNA modification GTPase GTPBP ......
Chromosomal Location19p13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Drugs targeting GTPBP3 collected from DrugBank database.
> Drugs from DrugBank database
 

There is no record.