TISIDB

Summary
Symbol	IFRD1
Name	interferon-related developmental regulator 1
Aliases	TIS7; 12-O-tetradecanoylphorbol-13-acetate-induced sequence 7; TPA induced sequence 7; nerve growth factor-i ......
Chromosomal Location	7q31.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Basic function annotation. > Subcellular Location, Domain and Function > Gene Ontology > KEGG and Reactome Pathway

> Subcellular Location, Domain and Function [ TOP ]
Subcellular Location	-
Domain	PF05004 Interferon-related developmental regulator (IFRD) PF04836 Interferon-related protein conserved region
Function	Could play a role in regulating gene activity in the proliferative and/or differentiative pathways induced by NGF. May be an autocrine factor that attenuates or amplifies the initial ligand-induced signal (By similarity).

> Gene Ontology [ TOP ]
Biological Process	GO:0001558 regulation of cell growth GO:0001709 cell fate determination GO:0007409 axonogenesis GO:0007518 myoblast fate determination GO:0008361 regulation of cell size GO:0010721 negative regulation of cell development GO:0010769 regulation of cell morphogenesis involved in differentiation GO:0010771 negative regulation of cell morphogenesis involved in differentiation GO:0010975 regulation of neuron projection development GO:0010977 negative regulation of neuron projection development GO:0014706 striated muscle tissue development GO:0016049 cell growth GO:0022604 regulation of cell morphogenesis GO:0030308 negative regulation of cell growth GO:0030516 regulation of axon extension GO:0030517 negative regulation of axon extension GO:0031099 regeneration GO:0031345 negative regulation of cell projection organization GO:0032535 regulation of cellular component size GO:0042246 tissue regeneration GO:0042692 muscle cell differentiation GO:0043403 skeletal muscle tissue regeneration GO:0045165 cell fate commitment GO:0045445 myoblast differentiation GO:0045665 negative regulation of neuron differentiation GO:0045926 negative regulation of growth GO:0048588 developmental cell growth GO:0048625 myoblast fate commitment GO:0048638 regulation of developmental growth GO:0048640 negative regulation of developmental growth GO:0048667 cell morphogenesis involved in neuron differentiation GO:0048668 collateral sprouting GO:0048670 regulation of collateral sprouting GO:0048671 negative regulation of collateral sprouting GO:0048675 axon extension GO:0050768 negative regulation of neurogenesis GO:0050770 regulation of axonogenesis GO:0050771 negative regulation of axonogenesis GO:0051961 negative regulation of nervous system development GO:0060537 muscle tissue development GO:0060560 developmental growth involved in morphogenesis GO:0061387 regulation of extent of cell growth GO:0061564 axon development GO:0090066 regulation of anatomical structure size GO:1990138 neuron projection extension
Molecular Function	-
Cellular Component	-

> KEGG and Reactome Pathway [ TOP ]
KEGG	-
Reactome	-

Summary
Symbol	IFRD1
Name	interferon-related developmental regulator 1
Aliases	TIS7; 12-O-tetradecanoylphorbol-13-acetate-induced sequence 7; TPA induced sequence 7; nerve growth factor-i ......
Chromosomal Location	7q31.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Literatures that report relations between IFRD1 and anti-tumor immunity. The specific mechanism were also collected if the literature reports that a gene specifically promotes or inhibits the infiltration or function of T/NK cells.

> Text Mining

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Literatures describing the relation between IFRD1 and anti-tumor immunity in human cancer.

PMID	Cancer type	Relation to immunity	Evidence sentences
26055519	Cervical Carcinoma	Inhibit immunity	These results suggest that IFRD1 may also play a role in suppressing the response of cancer cells to immune stimuli such as IFN-γ and TNF-α.

Summary
Symbol	IFRD1
Name	interferon-related developmental regulator 1
Aliases	TIS7; 12-O-tetradecanoylphorbol-13-acetate-induced sequence 7; TPA induced sequence 7; nerve growth factor-i ......
Chromosomal Location	7q31.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	High-throughput screening data (e.g. CRISPR-Cas9, shRNA and RNAi) for T cell-mediated killing. Genetic screen techniques can identify mechanisms of tumor cell resistance (e.g., PTPN2) and sensitivity (e.g., APLNR) to killing by cytotoxic T cells, the central effectors of anti-tumor immunity. After comprehensively searching, eight groups of screening data sets were collected in the current database. In this tab, users can check whether their selected genes cause resistance or increase sensitivity to T cell-mediated killing in various data sets.

> High-throughput Screening

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Statistical results of IFRD1 in screening data sets for detecting immune reponses.

PMID	Screening System	Cancer Type	Cell Line	Data Set	Statistical Results	Relation to immunity
29301958	CRISPR-Cas9	melanoma	B16F10	Pmel-1 T cell	NA/NS	NA/NS
29301958	CRISPR-Cas9	melanoma	B16F10	OT-1 T cell	NA/NS	NA/NS
28783722	CRISPR-Cas9	melanoma	Mel624	2CT-CRISPR	NA/NS	NA/NS
28723893	CRISPR-Cas9	melanoma	B16	GVAX+Anti-PD1	NA/NS	NA/NS
28723893	CRISPR-Cas9	melanoma	B16	GVAX	NA/NS	NA/NS
25691366	RNAi	Breast cancer	MCF7	Luc-CTL assay	NA/NS	NA/NS
24476824	shRNA	melanoma	B16	Primary screen	NA/NS	NA/NS
24476824	shRNA	melanoma	B16	Secondary screen	NA/NS	NA/NS

Summary
Symbol	IFRD1
Name	interferon-related developmental regulator 1
Aliases	TIS7; 12-O-tetradecanoylphorbol-13-acetate-induced sequence 7; TPA induced sequence 7; nerve growth factor-i ......
Chromosomal Location	7q31.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Transcriptomic and genomic profiling of pre-treated tumor biopsies from responders and non-responders to immunotherapy. These data were used to identify signatures and mechanisms of response to checkpoint blockade (e.g., anti-PDL1 and anti-PD1). One example is that mutations in the gene PBRM1 benefit clinical survival of patients with clear cell renal cell carcinoma. After comprehensively searching, we collected 5 and 6 of transcriptomic and genomic data sets, respectively. In this tab, users can check whether their selected genes have significant difference of expression or mutation between responders and non-responders in various data sets. > Expression difference between responders and non-responders > Mutation difference between responders and non-responders

> Expression difference between responders and non-responders

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Points in the above scatter plot represent the expression difference of IFRD1 in various data sets.

No	PMID	Cancer type	Group	Drug	# Res	# NRes	Log2 (Fold Change)	P value
1	26997480	Melanoma	all	Anti-PD-1 (pembrolizumab and nivolumab)	14	12	-0.192	0.556
2	26997480	Melanoma	MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	6	5	-0.804	0.683
3	26997480	Melanoma	non-MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	8	7	0.256	0.858
4	28552987	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	9	16	-0.294	0.335
5	28552987	Urothelial cancer	smoking	Anti-PD-L1 (atezolizumab)	5	9	-0.468	0.781
6	28552987	Urothelial cancer	non-smoking	Anti-PD-L1 (atezolizumab)	4	7	-0.071	0.974
7	29033130	Melanoma	all	Anti-PD-1 (nivolumab)	26	23	-0.109	0.784
8	29033130	Melanoma	NIV3-PROG	Anti-PD-1 (nivolumab)	15	11	-0.337	0.841
9	29033130	Melanoma	NIV3-NAIVE	Anti-PD-1 (nivolumab)	11	12	0.205	0.909
10	29301960	Clear cell renal cell carcinoma (ccRCC)	all	Anti-PD-1 (nivolumab)	4	8	-0.065	0.961
11	29301960	Clear cell renal cell carcinoma (ccRCC)	VEGFRi	Anti-PD-1 (nivolumab)	2	0	0	1
12	29301960	Clear cell renal cell carcinoma (ccRCC)	non-VEGFRi	Anti-PD-1 (nivolumab)	2	8	0.47	0.806
13	29443960	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	68	230	0.027	0.71

> Mutation difference between responders and non-responders

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Points in the above scatter plot represent the mutation difference of IFRD1 in various data sets.

No	PMID	Cancer type	Group	Drug	# Res	# NRes	% Mut/Res	% Mut/NRes	% Diff (R vs NR)	Pval
1	25765070	Non-small cell lung cancer (NSCLC)	all	Anti-PD-1 (pembrolizumab)	14	17	0	0	0	1
2	25765070	Non-small cell lung cancer (NSCLC)	smoking	Anti-PD-1 (pembrolizumab)	10	3	0	0	0	1
3	25765070	Non-small cell lung cancer (NSCLC)	non-smoking	Anti-PD-1 (pembrolizumab)	4	14	0	0	0	1
4	26359337	Melanoma	all	Anti-CTLA-4 (ipilimumab)	27	73	0	0	0	1
5	26359337	Melanoma	BRAFi	Anti-CTLA-4 (ipilimumab)	0	14	0	0	0	1
6	26359337	Melanoma	non-BRAFi	Anti-CTLA-4 (ipilimumab)	27	59	0	0	0	1
7	26997480	Melanoma	all	Anti-PD-1 (pembrolizumab and nivolumab)	21	17	0	0	0	1
8	26997480	Melanoma	MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	8	6	0	0	0	1
9	26997480	Melanoma	non-MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	13	11	0	0	0	1
10	28552987	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	9	16	0	6.2	-6.2	1
11	28552987	Urothelial cancer	smoking	Anti-PD-L1 (atezolizumab)	5	9	0	11.1	-11.1	1
12	28552987	Urothelial cancer	non-smoking	Anti-PD-L1 (atezolizumab)	4	7	0	0	0	1
13	29033130	Melanoma	all	Anti-PD-1 (nivolumab)	38	27	0	0	0	1
14	29033130	Melanoma	NIV3-PROG	Anti-PD-1 (nivolumab)	22	13	0	0	0	1
15	29033130	Melanoma	NIV3-NAIVE	Anti-PD-1 (nivolumab)	16	14	0	0	0	1
16	29301960	Clear cell renal cell carcinoma (ccRCC)	all	Anti-PD-1 (nivolumab)	11	13	9.1	0	9.1	0.458
17	29301960	Clear cell renal cell carcinoma (ccRCC)	VEGFRi	Anti-PD-1 (nivolumab)	6	1	16.7	0	16.7	1
18	29301960	Clear cell renal cell carcinoma (ccRCC)	non-VEGFRi	Anti-PD-1 (nivolumab)	5	12	0	0	0	1

Summary
Symbol	IFRD1
Name	interferon-related developmental regulator 1
Aliases	TIS7; 12-O-tetradecanoylphorbol-13-acetate-induced sequence 7; TPA induced sequence 7; nerve growth factor-i ......
Chromosomal Location	7q31.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between abundance of tumor-infiltrating lymphocytes (TILs) and expression, copy number, methylation, or mutation of IFRD1. The immune-related signatures of 28 TIL types from Charoentong's study, which can be viewed in the download page. For each cancer type, the relative abundance of TILs were inferred by using gene set variation analysis (GSVA) based on gene expression profile. In this tab, users can examine which kinds of TILs might be regulated by the current gene.

> Lymphocyte [ TOP ]

Summary
Symbol	IFRD1
Name	interferon-related developmental regulator 1
Aliases	TIS7; 12-O-tetradecanoylphorbol-13-acetate-induced sequence 7; TPA induced sequence 7; nerve growth factor-i ......
Chromosomal Location	7q31.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between three kinds of immunomodulators and expression, copy number, methylation, or mutation of IFRD1. These immunomo-dulators were collected from Charoentong's study. In this tab, users can examine which immunomodulators might be regulated by IFRD1. > Immunoinhibitor > Immunostimulator > MHC molecule

> Immunoinhibitor [ TOP ]

> Immunostimulator [ TOP ]

> MHC molecule [ TOP ]

Summary
Symbol	IFRD1
Name	interferon-related developmental regulator 1
Aliases	TIS7; 12-O-tetradecanoylphorbol-13-acetate-induced sequence 7; TPA induced sequence 7; nerve growth factor-i ......
Chromosomal Location	7q31.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between chemokines (or receptors) and expression, copy number, methylation, or mutation of IFRD1. In this tab, users can examine which chemokines (or receptors) might be regulated by the current gene. > Chemokine > Receptor

> Chemokine [ TOP ]

> Receptor [ TOP ]

Summary
Symbol	IFRD1
Name	interferon-related developmental regulator 1
Aliases	TIS7; 12-O-tetradecanoylphorbol-13-acetate-induced sequence 7; TPA induced sequence 7; nerve growth factor-i ......
Chromosomal Location	7q31.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Distribution of IFRD1 expression across immune and molecular subtypes. > Immune subtype > Molecular subtype

> Immune subtype [ TOP ]

> Molecular subtype [ TOP ]

Summary
Symbol	IFRD1
Name	interferon-related developmental regulator 1
Aliases	TIS7; 12-O-tetradecanoylphorbol-13-acetate-induced sequence 7; TPA induced sequence 7; nerve growth factor-i ......
Chromosomal Location	7q31.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Associations between IFRD1 and clinical features. > Overall survival analysis > Cancer stage > Tumor grade

> Overall survival [ TOP ]

> Stage [ TOP ]

> Grade [ TOP ]

Summary
Symbol	IFRD1
Name	interferon-related developmental regulator 1
Aliases	TIS7; 12-O-tetradecanoylphorbol-13-acetate-induced sequence 7; TPA induced sequence 7; nerve growth factor-i ......
Chromosomal Location	7q31.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Drugs targeting IFRD1 collected from DrugBank database.

> Drugs from DrugBank database [ TOP ]
There is no record.

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