Browse KCNA1

Summary
SymbolKCNA1
Namepotassium channel, voltage gated shaker related subfamily A, member 1
Aliases Kv1.1; RBK1; HUK1; MBK1; AEMK; potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ......
Chromosomal Location12p13
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Basic function annotation.
> Subcellular Location, Domain and Function
> Gene Ontology
> KEGG and Reactome Pathway
> Subcellular Location, Domain and Function
 
Subcellular Location Cell membrane Multi-pass membrane protein Membrane Cell projection, axon Cytoplasmic vesicle Perikaryon Endoplasmic reticulum Cell projection, dendrite Cell junction Cell junction, synapse Cell junction, synapse, presynaptic cell membrane Note=Homotetrameric KCNA1 is primarily located in the endoplasmic reticulum. Interaction with KCNA2 and KCNAB2 or with KCNA4 and KCNAB2 promotes expression at the cell membrane (By similarity). Detected at axon terminals (By similarity).
Domain PF02214 BTB/POZ domain
PF00520 Ion transport protein
Function

Voltage-gated potassium channel that mediates transmembrane potassium transport in excitable membranes, primarily in the brain and the central nervous system, but also in the kidney (PubMed:19903818). Contributes to the regulation of the membrane potential and nerve signaling, and prevents neuronal hyperexcitability (PubMed:17156368). Forms tetrameric potassium-selective channels through which potassium ions pass in accordance with their electrochemical gradient. The channel alternates between opened and closed conformations in response to the voltage difference across the membrane (PubMed:19912772). Can form functional homotetrameric channels and heterotetrameric channels that contain variable proportions of KCNA1, KCNA2, KCNA4, KCNA5, KCNA6, KCNA7, and possibly other family members as well; channel properties depend on the type of alpha subunits that are part of the channel (PubMed:12077175, PubMed:17156368). Channel properties are modulated by cytoplasmic beta subunits that regulate the subcellular location of the alpha subunits and promote rapid inactivation of delayed rectifier potassium channels (PubMed:12077175, PubMed:17156368). In vivo, membranes probably contain a mixture of heteromeric potassium channel complexes, making it difficult to assign currents observed in intact tissues to any particular potassium channel family member. Homotetrameric KCNA1 forms a delayed-rectifier potassium channel that opens in response to membrane depolarization, followed by slow spontaneous channel closure (PubMed:19912772, PubMed:19968958, PubMed:19307729, PubMed:19903818). In contrast, a heterotetrameric channel formed by KCNA1 and KCNA4 shows rapid inactivation (PubMed:17156368). Regulates neuronal excitability in hippocampus, especially in mossy fibers and medial perforant path axons, preventing neuronal hyperexcitability. Response to toxins that are selective for KCNA1, respectively for KCNA2, suggests that heteromeric potassium channels composed of both KCNA1 and KCNA2 play a role in pacemaking and regulate the output of deep cerebellar nuclear neurons (By similarity). May function as down-stream effector for G protein-coupled receptors and inhibit GABAergic inputs to basolateral amygdala neurons (By similarity). May contribute to the regulation of neurotransmitter release, such as gamma-aminobutyric acid (GABA) release (By similarity). Plays a role in regulating the generation of action potentials and preventing hyperexcitability in myelinated axons of the vagus nerve, and thereby contributes to the regulation of heart contraction (By similarity). Required for normal neuromuscular responses (PubMed:11026449, PubMed:17136396). Regulates the frequency of neuronal action potential firing in response to mechanical stimuli, and plays a role in the perception of pain caused by mechanical stimuli, but does not play a role in the perception of pain due to heat stimuli (By similarity). Required for normal responses to auditory stimuli and precise location of sound sources, but not for sound perception (By similarity). The use of toxins that block specific channels suggest that it contributes to the regulation of the axonal release of the neurotransmitter dopamine (By similarity). Required for normal postnatal brain development and normal proliferation of neuronal precursor cells in the brain (By similarity). Plays a role in the reabsorption of Mg(2+) in the distal convoluted tubules in the kidney and in magnesium ion homeostasis, probably via its effect on the membrane potential (PubMed:23903368, PubMed:19307729).

> Gene Ontology
 
Biological Process GO:0001508 action potential
GO:0001964 startle response
GO:0003012 muscle system process
GO:0006813 potassium ion transport
GO:0006936 muscle contraction
GO:0006937 regulation of muscle contraction
GO:0007405 neuroblast proliferation
GO:0009581 detection of external stimulus
GO:0009582 detection of abiotic stimulus
GO:0009612 response to mechanical stimulus
GO:0010035 response to inorganic substance
GO:0010038 response to metal ion
GO:0010644 cell communication by electrical coupling
GO:0010960 magnesium ion homeostasis
GO:0015672 monovalent inorganic cation transport
GO:0019226 transmission of nerve impulse
GO:0019228 neuronal action potential
GO:0019233 sensory perception of pain
GO:0021537 telencephalon development
GO:0021543 pallium development
GO:0021761 limbic system development
GO:0021766 hippocampus development
GO:0023041 neuronal signal transduction
GO:0030900 forebrain development
GO:0032026 response to magnesium ion
GO:0034762 regulation of transmembrane transport
GO:0034765 regulation of ion transmembrane transport
GO:0035637 multicellular organismal signaling
GO:0042391 regulation of membrane potential
GO:0044057 regulation of system process
GO:0050905 neuromuscular process
GO:0050954 sensory perception of mechanical stimulus
GO:0050966 detection of mechanical stimulus involved in sensory perception of pain
GO:0050974 detection of mechanical stimulus involved in sensory perception
GO:0050975 sensory perception of touch
GO:0050976 detection of mechanical stimulus involved in sensory perception of touch
GO:0050982 detection of mechanical stimulus
GO:0051259 protein oligomerization
GO:0051260 protein homooligomerization
GO:0061351 neural precursor cell proliferation
GO:0071241 cellular response to inorganic substance
GO:0071248 cellular response to metal ion
GO:0071286 cellular response to magnesium ion
GO:0071804 cellular potassium ion transport
GO:0071805 potassium ion transmembrane transport
GO:0072089 stem cell proliferation
GO:0072507 divalent inorganic cation homeostasis
GO:0090257 regulation of muscle system process
Molecular Function GO:0005216 ion channel activity
GO:0005244 voltage-gated ion channel activity
GO:0005249 voltage-gated potassium channel activity
GO:0005251 delayed rectifier potassium channel activity
GO:0005261 cation channel activity
GO:0005267 potassium channel activity
GO:0015077 monovalent inorganic cation transmembrane transporter activity
GO:0015079 potassium ion transmembrane transporter activity
GO:0015267 channel activity
GO:0022803 passive transmembrane transporter activity
GO:0022832 voltage-gated channel activity
GO:0022836 gated channel activity
GO:0022838 substrate-specific channel activity
GO:0022843 voltage-gated cation channel activity
GO:0046873 metal ion transmembrane transporter activity
Cellular Component GO:0008076 voltage-gated potassium channel complex
GO:0016324 apical plasma membrane
GO:0030424 axon
GO:0030425 dendrite
GO:0033267 axon part
GO:0033270 paranode region of axon
GO:0034702 ion channel complex
GO:0034703 cation channel complex
GO:0034705 potassium channel complex
GO:0042734 presynaptic membrane
GO:0043025 neuronal cell body
GO:0043204 perikaryon
GO:0043679 axon terminus
GO:0044224 juxtaparanode region of axon
GO:0044297 cell body
GO:0044304 main axon
GO:0044306 neuron projection terminus
GO:0045177 apical part of cell
GO:0097060 synaptic membrane
GO:0098793 presynapse
GO:1902495 transmembrane transporter complex
GO:1990351 transporter complex
> KEGG and Reactome Pathway
 
KEGG -
Reactome R-HSA-112316: Neuronal System
R-HSA-1296071: Potassium Channels
R-HSA-1296072: Voltage gated Potassium channels
Summary
SymbolKCNA1
Namepotassium channel, voltage gated shaker related subfamily A, member 1
Aliases Kv1.1; RBK1; HUK1; MBK1; AEMK; potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ......
Chromosomal Location12p13
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Literatures that report relations between KCNA1 and anti-tumor immunity. The specific mechanism were also collected if the literature reports that a gene specifically promotes or inhibits the infiltration or function of T/NK cells.
> Text Mining
 

There is no record.

Summary
SymbolKCNA1
Namepotassium channel, voltage gated shaker related subfamily A, member 1
Aliases Kv1.1; RBK1; HUK1; MBK1; AEMK; potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ......
Chromosomal Location12p13
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content High-throughput screening data (e.g. CRISPR-Cas9, shRNA and RNAi) for T cell-mediated killing. Genetic screen techniques can identify mechanisms of tumor cell resistance (e.g., PTPN2) and sensitivity (e.g., APLNR) to killing by cytotoxic T cells, the central effectors of anti-tumor immunity. After comprehensively searching, eight groups of screening data sets were collected in the current database. In this tab, users can check whether their selected genes cause resistance or increase sensitivity to T cell-mediated killing in various data sets.
> High-throughput Screening
  Statistical results of KCNA1 in screening data sets for detecting immune reponses.
PMID Screening System Cancer Type Cell Line Data Set Statistical Results Relation to immunity
29301958CRISPR-Cas9 melanomaB16F10Pmel-1 T cell NA/NSNA/NS
29301958CRISPR-Cas9 melanomaB16F10OT-1 T cell NA/NSNA/NS
28783722CRISPR-Cas9 melanomaMel6242CT-CRISPR NA/NSNA/NS
28723893CRISPR-Cas9 melanomaB16GVAX+Anti-PD1 NA/NSNA/NS
28723893CRISPR-Cas9 melanomaB16GVAX NA/NSNA/NS
25691366RNAiBreast cancerMCF7Luc-CTL assay NA/NSNA/NS
24476824shRNAmelanomaB16Primary screen NA/NSNA/NS
24476824shRNAmelanomaB16Secondary screen NA/NSNA/NS
Summary
SymbolKCNA1
Namepotassium channel, voltage gated shaker related subfamily A, member 1
Aliases Kv1.1; RBK1; HUK1; MBK1; AEMK; potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ......
Chromosomal Location12p13
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Transcriptomic and genomic profiling of pre-treated tumor biopsies from responders and non-responders to immunotherapy. These data were used to identify signatures and mechanisms of response to checkpoint blockade (e.g., anti-PDL1 and anti-PD1). One example is that mutations in the gene PBRM1 benefit clinical survival of patients with clear cell renal cell carcinoma. After comprehensively searching, we collected 5 and 6 of transcriptomic and genomic data sets, respectively. In this tab, users can check whether their selected genes have significant difference of expression or mutation between responders and non-responders in various data sets.
> Expression difference between responders and non-responders
> Mutation difference between responders and non-responders
> Expression difference between responders and non-responders
 
Points in the above scatter plot represent the expression difference of KCNA1 in various data sets.
No PMID Cancer type Group Drug # Res # NRes Log2 (Fold Change) P value Anno
126997480MelanomaallAnti-PD-1 (pembrolizumab and nivolumab)141201
226997480MelanomaMAPKiAnti-PD-1 (pembrolizumab and nivolumab)6501
326997480Melanomanon-MAPKiAnti-PD-1 (pembrolizumab and nivolumab)8701
428552987Urothelial cancerallAnti-PD-L1 (atezolizumab) 916-1.410.0187
528552987Urothelial cancersmokingAnti-PD-L1 (atezolizumab) 59-1.770.083
628552987Urothelial cancernon-smokingAnti-PD-L1 (atezolizumab) 47-0.9740.37
729033130MelanomaallAnti-PD-1 (nivolumab) 2623-1.3170.0962
829033130MelanomaNIV3-PROGAnti-PD-1 (nivolumab) 1511-0.820.599
929033130MelanomaNIV3-NAIVEAnti-PD-1 (nivolumab) 1112-1.9320.241
1029301960Clear cell renal cell carcinoma (ccRCC)allAnti-PD-1 (nivolumab) 4801
1129301960Clear cell renal cell carcinoma (ccRCC)VEGFRiAnti-PD-1 (nivolumab) 2001
1229301960Clear cell renal cell carcinoma (ccRCC)non-VEGFRiAnti-PD-1 (nivolumab) 28-0.0470.939
1329443960Urothelial cancerallAnti-PD-L1 (atezolizumab) 68230-0.1620.62
> Mutation difference between responders and non-responders
 
Points in the above scatter plot represent the mutation difference of KCNA1 in various data sets.
No PMID Cancer type Group Drug # Res # NRes % Mut/Res % Mut/NRes % Diff (R vs NR) Pval Anno
125765070Non-small cell lung cancer (NSCLC)allAnti-PD-1 (pembrolizumab) 14177.107.10.452
225765070Non-small cell lung cancer (NSCLC)smokingAnti-PD-1 (pembrolizumab) 103100101
325765070Non-small cell lung cancer (NSCLC)non-smokingAnti-PD-1 (pembrolizumab) 4140001
426359337MelanomaallAnti-CTLA-4 (ipilimumab) 27733.71.42.30.469
526359337MelanomaBRAFiAnti-CTLA-4 (ipilimumab) 0140001
626359337Melanomanon-BRAFiAnti-CTLA-4 (ipilimumab) 27593.71.720.532
726997480MelanomaallAnti-PD-1 (pembrolizumab and nivolumab)21179.55.93.61
826997480MelanomaMAPKiAnti-PD-1 (pembrolizumab and nivolumab)86250250.473
926997480Melanomanon-MAPKiAnti-PD-1 (pembrolizumab and nivolumab)131109.1-9.10.458
1028552987Urothelial cancerallAnti-PD-L1 (atezolizumab) 91611.1011.10.36
1128552987Urothelial cancersmokingAnti-PD-L1 (atezolizumab) 590001
1228552987Urothelial cancernon-smokingAnti-PD-L1 (atezolizumab) 47250250.364
1329033130MelanomaallAnti-PD-1 (nivolumab) 382703.7-3.70.415
1429033130MelanomaNIV3-PROGAnti-PD-1 (nivolumab) 221307.7-7.70.371
1529033130MelanomaNIV3-NAIVEAnti-PD-1 (nivolumab) 16140001
1629301960Clear cell renal cell carcinoma (ccRCC)allAnti-PD-1 (nivolumab) 11130001
1729301960Clear cell renal cell carcinoma (ccRCC)VEGFRiAnti-PD-1 (nivolumab) 610001
1829301960Clear cell renal cell carcinoma (ccRCC)non-VEGFRiAnti-PD-1 (nivolumab) 5120001
Summary
SymbolKCNA1
Namepotassium channel, voltage gated shaker related subfamily A, member 1
Aliases Kv1.1; RBK1; HUK1; MBK1; AEMK; potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ......
Chromosomal Location12p13
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Relations between abundance of tumor-infiltrating lymphocytes (TILs) and expression, copy number, methylation, or mutation of KCNA1. The immune-related signatures of 28 TIL types from Charoentong's study, which can be viewed in the download page. For each cancer type, the relative abundance of TILs were inferred by using gene set variation analysis (GSVA) based on gene expression profile. In this tab, users can examine which kinds of TILs might be regulated by the current gene.
> Lymphocyte
 
Summary
SymbolKCNA1
Namepotassium channel, voltage gated shaker related subfamily A, member 1
Aliases Kv1.1; RBK1; HUK1; MBK1; AEMK; potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ......
Chromosomal Location12p13
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Relations between three kinds of immunomodulators and expression, copy number, methylation, or mutation of KCNA1. These immunomo-dulators were collected from Charoentong's study. In this tab, users can examine which immunomodulators might be regulated by KCNA1.
> Immunoinhibitor
> Immunostimulator
> MHC molecule
> Immunoinhibitor
 
> Immunostimulator
 
> MHC molecule
 
Summary
SymbolKCNA1
Namepotassium channel, voltage gated shaker related subfamily A, member 1
Aliases Kv1.1; RBK1; HUK1; MBK1; AEMK; potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ......
Chromosomal Location12p13
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Relations between chemokines (or receptors) and expression, copy number, methylation, or mutation of KCNA1. In this tab, users can examine which chemokines (or receptors) might be regulated by the current gene.
> Chemokine
> Receptor
> Chemokine
 
> Receptor
 
Summary
SymbolKCNA1
Namepotassium channel, voltage gated shaker related subfamily A, member 1
Aliases Kv1.1; RBK1; HUK1; MBK1; AEMK; potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ......
Chromosomal Location12p13
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Distribution of KCNA1 expression across immune and molecular subtypes.
> Immune subtype
> Molecular subtype
> Immune subtype
 
> Molecular subtype
 
Summary
SymbolKCNA1
Namepotassium channel, voltage gated shaker related subfamily A, member 1
Aliases Kv1.1; RBK1; HUK1; MBK1; AEMK; potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ......
Chromosomal Location12p13
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Associations between KCNA1 and clinical features.
> Overall survival analysis
> Cancer stage
> Tumor grade
> Overall survival
 
> Stage
 
> Grade
 
Summary
SymbolKCNA1
Namepotassium channel, voltage gated shaker related subfamily A, member 1
Aliases Kv1.1; RBK1; HUK1; MBK1; AEMK; potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ......
Chromosomal Location12p13
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Drugs targeting KCNA1 collected from DrugBank database.
> Drugs from DrugBank database
 

  Details on drugs targeting KCNA1.
ID Name Drug Type Targets #Targets
DB00228EnfluraneSmall MoleculeATP2C1, ATP5D, GABRA1, GABRA2, GABRA3, GABRA4, GABRA5, GABRA6, GAB ......23
DB00321AmitriptylineSmall MoleculeADRA1A, ADRA1B, ADRA1D, ADRA2A, ADRB1, ADRB2, ADRB3, CHRM1, CHRM2, ......35
DB00753IsofluraneSmall MoleculeATP2C1, ATP5D, GABRA1, GABRA1, GABRA2, GABRA3, GABRA4, GABRA5, GAB ......22
DB01028MethoxyfluraneSmall MoleculeATP2C1, ATP5D, GABRA1, GABRA1, GABRA2, GABRA3, GABRA4, GABRA5, GAB ......23
DB01115NifedipineSmall MoleculeCACNA1C, CACNA1D, CACNA1H, CACNA1S, CACNA2D1, CACNB2, KCNA1, NR1I28
DB01189DesfluraneSmall MoleculeATP2C1, ATP5D, GABRA1, GABRA2, GABRA3, GABRA4, GABRA5, GABRA6, GAB ......22
DB01236SevofluraneSmall MoleculeATP2C1, ATP5D, GABRA1, GABRA1, GABRA2, GABRA3, GABRA4, GABRA5, GAB ......23
DB06637DalfampridineSmall MoleculeKCNA1, KCNA10, KCNA2, KCNA3, KCNA4, KCNA5, KCNA6, KCNA7, KCNB1, KC ......16
DB08837TetraethylammoniumSmall MoleculeCHRNA9, KCNA12