Browse NFKB2

Summary
SymbolNFKB2
Namenuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
Aliases LYT-10; NF-kB2; CVID10; H2TF1; LYT10; DNA-binding factor KBF2; NFKB, p52/p100 subunit; lymphocyte translocat ......
Chromosomal Location10q24
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Basic function annotation.
> Subcellular Location, Domain and Function
> Gene Ontology
> KEGG and Reactome Pathway
> Subcellular Location, Domain and Function
 
Subcellular Location Nucleus. Cytoplasm. Note=Nuclear, but also found in the cytoplasm in an inactive form complexed to an inhibitor (I-kappa-B).
Domain PF12796 Ankyrin repeats (3 copies)
PF00531 Death domain
PF16179 Rel homology dimerisation domain
PF00554 Rel homology DNA-binding domain
Function

NF-kappa-B is a pleiotropic transcription factor present in almost all cell types and is the endpoint of a series of signal transduction events that are initiated by a vast array of stimuli related to many biological processes such as inflammation, immunity, differentiation, cell growth, tumorigenesis and apoptosis. NF-kappa-B is a homo- or heterodimeric complex formed by the Rel-like domain-containing proteins RELA/p65, RELB, NFKB1/p105, NFKB1/p50, REL and NFKB2/p52. The dimers bind at kappa-B sites in the DNA of their target genes and the individual dimers have distinct preferences for different kappa-B sites that they can bind with distinguishable affinity and specificity. Different dimer combinations act as transcriptional activators or repressors, respectively. NF-kappa-B is controlled by various mechanisms of post-translational modification and subcellular compartmentalization as well as by interactions with other cofactors or corepressors. NF-kappa-B complexes are held in the cytoplasm in an inactive state complexed with members of the NF-kappa-B inhibitor (I-kappa-B) family. In a conventional activation pathway, I-kappa-B is phosphorylated by I-kappa-B kinases (IKKs) in response to different activators, subsequently degraded thus liberating the active NF-kappa-B complex which translocates to the nucleus. In a non-canonical activation pathway, the MAP3K14-activated CHUK/IKKA homodimer phosphorylates NFKB2/p100 associated with RelB, inducing its proteolytic processing to NFKB2/p52 and the formation of NF-kappa-B RelB-p52 complexes. The NF-kappa-B heterodimeric RelB-p52 complex is a transcriptional activator. The NF-kappa-B p52-p52 homodimer is a transcriptional repressor. NFKB2 appears to have dual functions such as cytoplasmic retention of attached NF-kappa-B proteins by p100 and generation of p52 by a cotranslational processing. The proteasome-mediated process ensures the production of both p52 and p100 and preserves their independent function. p52 binds to the kappa-B consensus sequence 5'-GGRNNYYCC-3', located in the enhancer region of genes involved in immune response and acute phase reactions. p52 and p100 are respectively the minor and major form; the processing of p100 being relatively poor. Isoform p49 is a subunit of the NF-kappa-B protein complex, which stimulates the HIV enhancer in synergy with p65. In concert with RELB, regulates the circadian clock by repressing the transcriptional activator activity of the CLOCK-ARNTL/BMAL1 heterodimer.

> Gene Ontology
 
Biological Process GO:0001819 positive regulation of cytokine production
GO:0002237 response to molecule of bacterial origin
GO:0002250 adaptive immune response
GO:0002266 follicular dendritic cell activation
GO:0002268 follicular dendritic cell differentiation
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains
GO:0002467 germinal center formation
GO:0007249 I-kappaB kinase/NF-kappaB signaling
GO:0007568 aging
GO:0030198 extracellular matrix organization
GO:0032479 regulation of type I interferon production
GO:0032481 positive regulation of type I interferon production
GO:0032496 response to lipopolysaccharide
GO:0032606 type I interferon production
GO:0038061 NIK/NF-kappaB signaling
GO:0043062 extracellular structure organization
GO:0048511 rhythmic process
GO:0048536 spleen development
GO:0051090 regulation of sequence-specific DNA binding transcription factor activity
GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051092 positive regulation of NF-kappaB transcription factor activity
Molecular Function GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000982 transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0000987 core promoter proximal region sequence-specific DNA binding
GO:0001077 transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001159 core promoter proximal region DNA binding
GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682 chromatin binding
GO:0003713 transcription coactivator activity
Cellular Component GO:0033256 I-kappaB/NF-kappaB complex
GO:0033257 Bcl3/NF-kappaB2 complex
> KEGG and Reactome Pathway
 
KEGG hsa04010 MAPK signaling pathway
hsa04064 NF-kappa B signaling pathway
hsa04380 Osteoclast differentiation
Reactome R-HSA-166054: Activated TLR4 signalling
R-HSA-5621481: C-type lectin receptors (CLRs)
R-HSA-5607764: CLEC7A (Dectin-1) signaling
R-HSA-3247509: Chromatin modifying enzymes
R-HSA-4839726: Chromatin organization
R-HSA-1280215: Cytokine Signaling in Immune system
R-HSA-1834949: Cytosolic sensors of pathogen-associated DNA
R-HSA-3134963: DEx/H-box helicases activate type I IFN and inflammatory cytokines production
R-HSA-5607761: Dectin-1 mediated noncanonical NF-kB signaling
R-HSA-1643685: Disease
R-HSA-5602358: Diseases associated with the TLR signaling cascade
R-HSA-5260271: Diseases of Immune System
R-HSA-5603027: IKBKG deficiency causes anhidrotic ectodermal dysplasia with immunodeficiency (EDA-ID) (via TLR)
R-HSA-5603029: IkBA variant leads to EDA-ID
R-HSA-168256: Immune System
R-HSA-168249: Innate Immune System
R-HSA-448706: Interleukin-1 processing
R-HSA-975871: MyD88 cascade initiated on plasma membrane
R-HSA-975155: MyD88 dependent cascade initiated on endosome
R-HSA-166166: MyD88-independent TLR3/TLR4 cascade
R-HSA-166058: MyD88
R-HSA-5676590: NIK-->noncanonical NF-kB signaling
R-HSA-3214841: PKMTs methylate histone lysines
R-HSA-168928: RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways
R-HSA-1810476: RIP-mediated NFkB activation via ZBP1
R-HSA-449147: Signaling by Interleukins
R-HSA-445989: TAK1 activates NFkB by phosphorylation and activation of IKKs complex
R-HSA-5668541: TNFR2 non-canonical NF-kB pathway
R-HSA-168180: TRAF6 Mediated Induction of proinflammatory cytokines
R-HSA-933542: TRAF6 mediated NF-kB activation
R-HSA-975138: TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation
R-HSA-937061: TRIF-mediated TLR3/TLR4 signaling
R-HSA-168142: Toll Like Receptor 10 (TLR10) Cascade
R-HSA-181438: Toll Like Receptor 2 (TLR2) Cascade
R-HSA-168164: Toll Like Receptor 3 (TLR3) Cascade
R-HSA-166016: Toll Like Receptor 4 (TLR4) Cascade
R-HSA-168176: Toll Like Receptor 5 (TLR5) Cascade
R-HSA-168181: Toll Like Receptor 7/8 (TLR7/8) Cascade
R-HSA-168138: Toll Like Receptor 9 (TLR9) Cascade
R-HSA-168179: Toll Like Receptor TLR1
R-HSA-168188: Toll Like Receptor TLR6
R-HSA-168898: Toll-Like Receptors Cascades
R-HSA-1606322: ZBP1(DAI) mediated induction of type I IFNs
Summary
SymbolNFKB2
Namenuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
Aliases LYT-10; NF-kB2; CVID10; H2TF1; LYT10; DNA-binding factor KBF2; NFKB, p52/p100 subunit; lymphocyte translocat ......
Chromosomal Location10q24
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Literatures that report relations between NFKB2 and anti-tumor immunity. The specific mechanism were also collected if the literature reports that a gene specifically promotes or inhibits the infiltration or function of T/NK cells.
> Text Mining
 
  Literatures describing the relation between NFKB2 and anti-tumor immunity in human cancer.
PMID Cancer type Relation to immunity Evidence sentences
18281283T-Cell Non-Hodgkin Lymphoma; Chronic Lymphocytic Leukemia; Plasma Cell Myeloma; Recurrent Primary Mediastinal (Thymic) Large B-Cell Cell LymphomaInhibit immunityThe NF-κB2 gene is recurrently mutated in a variety of human lymphoid malignancies, including T-cell lymphoma, chronic lymphocytic leukemia, multiple myeloma, and B cell lymphoma. However, they are predisposed to inflammatory autoimmune disease characterized by multiorgan infiltration of activated lymphocytes, high levels of autoantibodies in the serum, and immune complex glomerulonephritis. p52, but not p80HT, represses Bim expression, leading to defects in apoptotic processes critical for elimination of autoreactive lymphocytes and control of immune response. These findings reveal distinct signaling pathways for actions of NF-kappaB2 mutants and p52 and suggest a causal role for sustained NF-kappaB2 activation in the pathogenesis of autoimmunity.
Summary
SymbolNFKB2
Namenuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
Aliases LYT-10; NF-kB2; CVID10; H2TF1; LYT10; DNA-binding factor KBF2; NFKB, p52/p100 subunit; lymphocyte translocat ......
Chromosomal Location10q24
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content High-throughput screening data (e.g. CRISPR-Cas9, shRNA and RNAi) for T cell-mediated killing. Genetic screen techniques can identify mechanisms of tumor cell resistance (e.g., PTPN2) and sensitivity (e.g., APLNR) to killing by cytotoxic T cells, the central effectors of anti-tumor immunity. After comprehensively searching, eight groups of screening data sets were collected in the current database. In this tab, users can check whether their selected genes cause resistance or increase sensitivity to T cell-mediated killing in various data sets.
> High-throughput Screening
  Statistical results of NFKB2 in screening data sets for detecting immune reponses.
PMID Screening System Cancer Type Cell Line Data Set Statistical Results Relation to immunity
29301958CRISPR-Cas9 melanomaB16F10Pmel-1 T cell NA/NSNA/NS
29301958CRISPR-Cas9 melanomaB16F10OT-1 T cell NA/NSNA/NS
28783722CRISPR-Cas9 melanomaMel6242CT-CRISPR NA/NSNA/NS
28723893CRISPR-Cas9 melanomaB16GVAX+Anti-PD1 NA/NSNA/NS
28723893CRISPR-Cas9 melanomaB16GVAX NA/NSNA/NS
25691366RNAiBreast cancerMCF7Luc-CTL assay NA/NSNA/NS
24476824shRNAmelanomaB16Primary screen NA/NSNA/NS
24476824shRNAmelanomaB16Secondary screen NA/NSNA/NS
Summary
SymbolNFKB2
Namenuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
Aliases LYT-10; NF-kB2; CVID10; H2TF1; LYT10; DNA-binding factor KBF2; NFKB, p52/p100 subunit; lymphocyte translocat ......
Chromosomal Location10q24
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Transcriptomic and genomic profiling of pre-treated tumor biopsies from responders and non-responders to immunotherapy. These data were used to identify signatures and mechanisms of response to checkpoint blockade (e.g., anti-PDL1 and anti-PD1). One example is that mutations in the gene PBRM1 benefit clinical survival of patients with clear cell renal cell carcinoma. After comprehensively searching, we collected 5 and 6 of transcriptomic and genomic data sets, respectively. In this tab, users can check whether their selected genes have significant difference of expression or mutation between responders and non-responders in various data sets.
> Expression difference between responders and non-responders
> Mutation difference between responders and non-responders
> Expression difference between responders and non-responders
 
Points in the above scatter plot represent the expression difference of NFKB2 in various data sets.
No PMID Cancer type Group Drug # Res # NRes Log2 (Fold Change) P value Anno
126997480MelanomaallAnti-PD-1 (pembrolizumab and nivolumab)1412-0.0510.875
226997480MelanomaMAPKiAnti-PD-1 (pembrolizumab and nivolumab)650.0430.983
326997480Melanomanon-MAPKiAnti-PD-1 (pembrolizumab and nivolumab)87-0.1180.935
428552987Urothelial cancerallAnti-PD-L1 (atezolizumab) 9160.1150.796
528552987Urothelial cancersmokingAnti-PD-L1 (atezolizumab) 59-0.1140.962
628552987Urothelial cancernon-smokingAnti-PD-L1 (atezolizumab) 470.410.899
729033130MelanomaallAnti-PD-1 (nivolumab) 26230.5290.2
829033130MelanomaNIV3-PROGAnti-PD-1 (nivolumab) 15110.5050.719
929033130MelanomaNIV3-NAIVEAnti-PD-1 (nivolumab) 11120.530.741
1029301960Clear cell renal cell carcinoma (ccRCC)allAnti-PD-1 (nivolumab) 480.7950.632
1129301960Clear cell renal cell carcinoma (ccRCC)VEGFRiAnti-PD-1 (nivolumab) 2001
1229301960Clear cell renal cell carcinoma (ccRCC)non-VEGFRiAnti-PD-1 (nivolumab) 280.6740.785
1329443960Urothelial cancerallAnti-PD-L1 (atezolizumab) 68230-0.0980.253
> Mutation difference between responders and non-responders
 
Points in the above scatter plot represent the mutation difference of NFKB2 in various data sets.
No PMID Cancer type Group Drug # Res # NRes % Mut/Res % Mut/NRes % Diff (R vs NR) Pval Anno
125765070Non-small cell lung cancer (NSCLC)allAnti-PD-1 (pembrolizumab) 14177.107.10.452
225765070Non-small cell lung cancer (NSCLC)smokingAnti-PD-1 (pembrolizumab) 103100101
325765070Non-small cell lung cancer (NSCLC)non-smokingAnti-PD-1 (pembrolizumab) 4140001
426359337MelanomaallAnti-CTLA-4 (ipilimumab) 277311.14.170.339
526359337MelanomaBRAFiAnti-CTLA-4 (ipilimumab) 0140001
626359337Melanomanon-BRAFiAnti-CTLA-4 (ipilimumab) 275911.15.160.373
726997480MelanomaallAnti-PD-1 (pembrolizumab and nivolumab)21170001
826997480MelanomaMAPKiAnti-PD-1 (pembrolizumab and nivolumab)860001
926997480Melanomanon-MAPKiAnti-PD-1 (pembrolizumab and nivolumab)13110001
1028552987Urothelial cancerallAnti-PD-L1 (atezolizumab) 9160001
1128552987Urothelial cancersmokingAnti-PD-L1 (atezolizumab) 590001
1228552987Urothelial cancernon-smokingAnti-PD-L1 (atezolizumab) 470001
1329033130MelanomaallAnti-PD-1 (nivolumab) 38275.305.30.507
1429033130MelanomaNIV3-PROGAnti-PD-1 (nivolumab) 22134.504.51
1529033130MelanomaNIV3-NAIVEAnti-PD-1 (nivolumab) 16146.206.21
1629301960Clear cell renal cell carcinoma (ccRCC)allAnti-PD-1 (nivolumab) 11130001
1729301960Clear cell renal cell carcinoma (ccRCC)VEGFRiAnti-PD-1 (nivolumab) 610001
1829301960Clear cell renal cell carcinoma (ccRCC)non-VEGFRiAnti-PD-1 (nivolumab) 5120001
Summary
SymbolNFKB2
Namenuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
Aliases LYT-10; NF-kB2; CVID10; H2TF1; LYT10; DNA-binding factor KBF2; NFKB, p52/p100 subunit; lymphocyte translocat ......
Chromosomal Location10q24
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Relations between abundance of tumor-infiltrating lymphocytes (TILs) and expression, copy number, methylation, or mutation of NFKB2. The immune-related signatures of 28 TIL types from Charoentong's study, which can be viewed in the download page. For each cancer type, the relative abundance of TILs were inferred by using gene set variation analysis (GSVA) based on gene expression profile. In this tab, users can examine which kinds of TILs might be regulated by the current gene.
> Lymphocyte
 
Summary
SymbolNFKB2
Namenuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
Aliases LYT-10; NF-kB2; CVID10; H2TF1; LYT10; DNA-binding factor KBF2; NFKB, p52/p100 subunit; lymphocyte translocat ......
Chromosomal Location10q24
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Relations between three kinds of immunomodulators and expression, copy number, methylation, or mutation of NFKB2. These immunomo-dulators were collected from Charoentong's study. In this tab, users can examine which immunomodulators might be regulated by NFKB2.
> Immunoinhibitor
> Immunostimulator
> MHC molecule
> Immunoinhibitor
 
> Immunostimulator
 
> MHC molecule
 
Summary
SymbolNFKB2
Namenuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
Aliases LYT-10; NF-kB2; CVID10; H2TF1; LYT10; DNA-binding factor KBF2; NFKB, p52/p100 subunit; lymphocyte translocat ......
Chromosomal Location10q24
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Relations between chemokines (or receptors) and expression, copy number, methylation, or mutation of NFKB2. In this tab, users can examine which chemokines (or receptors) might be regulated by the current gene.
> Chemokine
> Receptor
> Chemokine
 
> Receptor
 
Summary
SymbolNFKB2
Namenuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
Aliases LYT-10; NF-kB2; CVID10; H2TF1; LYT10; DNA-binding factor KBF2; NFKB, p52/p100 subunit; lymphocyte translocat ......
Chromosomal Location10q24
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Distribution of NFKB2 expression across immune and molecular subtypes.
> Immune subtype
> Molecular subtype
> Immune subtype
 
> Molecular subtype
 
Summary
SymbolNFKB2
Namenuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
Aliases LYT-10; NF-kB2; CVID10; H2TF1; LYT10; DNA-binding factor KBF2; NFKB, p52/p100 subunit; lymphocyte translocat ......
Chromosomal Location10q24
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Associations between NFKB2 and clinical features.
> Overall survival analysis
> Cancer stage
> Tumor grade
> Overall survival
 
> Stage
 
> Grade
 
Summary
SymbolNFKB2
Namenuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
Aliases LYT-10; NF-kB2; CVID10; H2TF1; LYT10; DNA-binding factor KBF2; NFKB, p52/p100 subunit; lymphocyte translocat ......
Chromosomal Location10q24
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Drugs targeting NFKB2 collected from DrugBank database.
> Drugs from DrugBank database
 

  Details on drugs targeting NFKB2.
ID Name Drug Type Targets #Targets
DB00945Acetylsalicylic acidSmall MoleculeAKR1C1, EDNRA, HSPA5, IKBKB, NFKB1, NFKB2, NFKBIA, PRKAA1, PRKAA2, ......18
DB01296GlucosamineSmall MoleculeIFNG, MMP9, NFKB2, TNF4
DB05212HE3286Small MoleculeNFKB1, NFKB22
DB05451P54Small MoleculeNFKB1, NFKB22
DB05464NOX-700Small MoleculeNFKB1, NFKB22
DB05471SGN-30BiotechNFKB1, NFKB22
DB05487CustirsenSmall MoleculeESR1, NFKB1, NFKB23
DB05767AndrographolideSmall MoleculeIL1B, IL6, NFKB1, NFKB2, TNF5