Summary | |
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Symbol | NOP2 |
Name | NOP2 nucleolar protein |
Aliases | NOP120; NSUN1; NOP2/Sun domain family, member 1; nucleolar protein 1 (120kD); nucleolar protein 1, 120kDa; n ...... |
Chromosomal Location | 12p13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Basic function annotation. > Subcellular Location, Domain and Function > Gene Ontology > KEGG and Reactome Pathway |
Subcellular Location | Nucleus, nucleolus |
Domain |
PF01189 16S rRNA methyltransferase RsmB/F PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF PF08062 P120R (NUC006) repeat |
Function |
Involved in ribosomal large subunit assembly (PubMed:24120868). S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the C(5) position of cytosine 4447 in 28S rRNA (Probable). May play a role in the regulation of the cell cycle and the increased nucleolar activity that is associated with the cell proliferation (Probable). |
Biological Process |
GO:0000154 rRNA modification GO:0000470 maturation of LSU-rRNA GO:0001510 RNA methylation GO:0006364 rRNA processing GO:0009451 RNA modification GO:0016072 rRNA metabolic process GO:0022613 ribonucleoprotein complex biogenesis GO:0031167 rRNA methylation GO:0032259 methylation GO:0034470 ncRNA processing GO:0042254 ribosome biogenesis GO:0042273 ribosomal large subunit biogenesis GO:0043414 macromolecule methylation GO:0070475 rRNA base methylation |
Molecular Function |
GO:0008168 methyltransferase activity GO:0008169 C-methyltransferase activity GO:0008173 RNA methyltransferase activity GO:0008649 rRNA methyltransferase activity GO:0008757 S-adenosylmethionine-dependent methyltransferase activity GO:0009383 rRNA (cytosine-C5-)-methyltransferase activity GO:0016434 rRNA (cytosine) methyltransferase activity GO:0016741 transferase activity, transferring one-carbon groups |
Cellular Component | - |
KEGG | - |
Reactome |
R-HSA-74160: Gene Expression R-HSA-212436: Generic Transcription Pathway R-HSA-8869496: TFAP2A acts as a transcriptional repressor during retinoic acid induced cell differentiation R-HSA-8864260: Transcriptional regulation by the AP-2 (TFAP2) family of transcription factors R-HSA-6790901: rRNA modification in the nucleus and cytosol R-HSA-72312: rRNA processing R-HSA-8868773: rRNA processing in the nucleus and cytosol |
Summary | |
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Symbol | NOP2 |
Name | NOP2 nucleolar protein |
Aliases | NOP120; NSUN1; NOP2/Sun domain family, member 1; nucleolar protein 1 (120kD); nucleolar protein 1, 120kDa; n ...... |
Chromosomal Location | 12p13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content | Literatures that report relations between NOP2 and anti-tumor immunity. The specific mechanism were also collected if the literature reports that a gene specifically promotes or inhibits the infiltration or function of T/NK cells. |
There is no record. |
Summary | |
---|---|
Symbol | NOP2 |
Name | NOP2 nucleolar protein |
Aliases | NOP120; NSUN1; NOP2/Sun domain family, member 1; nucleolar protein 1 (120kD); nucleolar protein 1, 120kDa; n ...... |
Chromosomal Location | 12p13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content | High-throughput screening data (e.g. CRISPR-Cas9, shRNA and RNAi) for T cell-mediated killing. Genetic screen techniques can identify mechanisms of tumor cell resistance (e.g., PTPN2) and sensitivity (e.g., APLNR) to killing by cytotoxic T cells, the central effectors of anti-tumor immunity. After comprehensively searching, eight groups of screening data sets were collected in the current database. In this tab, users can check whether their selected genes cause resistance or increase sensitivity to T cell-mediated killing in various data sets. |
> High-throughput Screening
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Statistical results of NOP2 in screening data sets for detecting immune reponses.
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Summary | |
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Symbol | NOP2 |
Name | NOP2 nucleolar protein |
Aliases | NOP120; NSUN1; NOP2/Sun domain family, member 1; nucleolar protein 1 (120kD); nucleolar protein 1, 120kDa; n ...... |
Chromosomal Location | 12p13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Transcriptomic and genomic profiling of pre-treated tumor biopsies from responders and non-responders to immunotherapy. These data were used to identify signatures and mechanisms of response to checkpoint blockade (e.g., anti-PDL1 and anti-PD1). One example is that mutations in the gene PBRM1 benefit clinical survival of patients with clear cell renal cell carcinoma. After comprehensively searching, we collected 5 and 6 of transcriptomic and genomic data sets, respectively. In this tab, users can check whether their selected genes have significant difference of expression or mutation between responders and non-responders in various data sets. > Expression difference between responders and non-responders > Mutation difference between responders and non-responders |
Points in the above scatter plot represent the expression difference of NOP2 in various data sets.
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Points in the above scatter plot represent the mutation difference of NOP2 in various data sets.
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Summary | |
---|---|
Symbol | NOP2 |
Name | NOP2 nucleolar protein |
Aliases | NOP120; NSUN1; NOP2/Sun domain family, member 1; nucleolar protein 1 (120kD); nucleolar protein 1, 120kDa; n ...... |
Chromosomal Location | 12p13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Relations between abundance of tumor-infiltrating lymphocytes (TILs) and expression, copy number, methylation, or mutation of NOP2. The immune-related signatures of 28 TIL types from Charoentong's study, which can be viewed in the download page. For each cancer type, the relative abundance of TILs were inferred by using gene set variation analysis (GSVA) based on gene expression profile. In this tab, users can examine which kinds of TILs might be regulated by the current gene. |
Summary | |
---|---|
Symbol | NOP2 |
Name | NOP2 nucleolar protein |
Aliases | NOP120; NSUN1; NOP2/Sun domain family, member 1; nucleolar protein 1 (120kD); nucleolar protein 1, 120kDa; n ...... |
Chromosomal Location | 12p13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Relations between three kinds of immunomodulators and expression, copy number, methylation, or mutation of NOP2. These immunomo-dulators were collected from Charoentong's study. In this tab, users can examine which immunomodulators might be regulated by NOP2. > Immunoinhibitor > Immunostimulator > MHC molecule |
Summary | |
---|---|
Symbol | NOP2 |
Name | NOP2 nucleolar protein |
Aliases | NOP120; NSUN1; NOP2/Sun domain family, member 1; nucleolar protein 1 (120kD); nucleolar protein 1, 120kDa; n ...... |
Chromosomal Location | 12p13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Relations between chemokines (or receptors) and expression, copy number, methylation, or mutation of NOP2. In this tab, users can examine which chemokines (or receptors) might be regulated by the current gene. > Chemokine > Receptor |
Summary | |
---|---|
Symbol | NOP2 |
Name | NOP2 nucleolar protein |
Aliases | NOP120; NSUN1; NOP2/Sun domain family, member 1; nucleolar protein 1 (120kD); nucleolar protein 1, 120kDa; n ...... |
Chromosomal Location | 12p13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Distribution of NOP2 expression across immune and molecular subtypes. > Immune subtype > Molecular subtype |
Summary | |
---|---|
Symbol | NOP2 |
Name | NOP2 nucleolar protein |
Aliases | NOP120; NSUN1; NOP2/Sun domain family, member 1; nucleolar protein 1 (120kD); nucleolar protein 1, 120kDa; n ...... |
Chromosomal Location | 12p13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Associations between NOP2 and clinical features. > Overall survival analysis > Cancer stage > Tumor grade |
Summary | |
---|---|
Symbol | NOP2 |
Name | NOP2 nucleolar protein |
Aliases | NOP120; NSUN1; NOP2/Sun domain family, member 1; nucleolar protein 1 (120kD); nucleolar protein 1, 120kDa; n ...... |
Chromosomal Location | 12p13 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content | Drugs targeting NOP2 collected from DrugBank database. |
There is no record. |