TISIDB

Summary
Symbol	PRPF40A
Name	PRP40 pre-mRNA processing factor 40 homolog A
Aliases	FLJ20585; FBP11; HYPA; NY-REN-6; HIP10; FBP-11; FLAF1; Prp40; FNBP3; formin-binding protein 3; formin bindin ......
Chromosomal Location	2q23.3
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Basic function annotation. > Subcellular Location, Domain and Function > Gene Ontology > KEGG and Reactome Pathway

> Subcellular Location, Domain and Function [ TOP ]
Subcellular Location	Nucleus speckle Nucleus matrix Note=Colocalizes with AKAP8L in the nuclear matrix.
Domain	PF01846 FF domain PF00397 WW domain
Function	Binds to WASL/N-WASP and suppresses its translocation from the nucleus to the cytoplasm, thereby inhibiting its cytoplasmic function (By similarity). Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape and migration. May play a role in cytokinesis. May be involved in pre-mRNA splicing.

> Gene Ontology [ TOP ]
Biological Process	GO:0000375 RNA splicing, via transesterification reactions GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile GO:0000398 mRNA splicing, via spliceosome GO:0000910 cytokinesis GO:0006397 mRNA processing GO:0008360 regulation of cell shape GO:0008380 RNA splicing GO:0022604 regulation of cell morphogenesis GO:0032465 regulation of cytokinesis GO:0051302 regulation of cell division
Molecular Function	GO:0070064 proline-rich region binding
Cellular Component	GO:0005681 spliceosomal complex GO:0005684 U2-type spliceosomal complex GO:0005685 U1 snRNP GO:0016363 nuclear matrix GO:0016604 nuclear body GO:0016607 nuclear speck GO:0030532 small nuclear ribonucleoprotein complex GO:0034399 nuclear periphery GO:0071004 U2-type prespliceosome GO:0071010 prespliceosome GO:0097525 spliceosomal snRNP complex

> KEGG and Reactome Pathway [ TOP ]
KEGG	hsa03040 Spliceosome
Reactome	R-HSA-74160: Gene Expression R-HSA-72203: Processing of Capped Intron-Containing Pre-mRNA R-HSA-72172: mRNA Splicing R-HSA-72163: mRNA Splicing - Major Pathway

Summary
Symbol	PRPF40A
Name	PRP40 pre-mRNA processing factor 40 homolog A
Aliases	FLJ20585; FBP11; HYPA; NY-REN-6; HIP10; FBP-11; FLAF1; Prp40; FNBP3; formin-binding protein 3; formin bindin ......
Chromosomal Location	2q23.3
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Literatures that report relations between PRPF40A and anti-tumor immunity. The specific mechanism were also collected if the literature reports that a gene specifically promotes or inhibits the infiltration or function of T/NK cells.

> Text Mining [ TOP ]
There is no record.

Summary
Symbol	PRPF40A
Name	PRP40 pre-mRNA processing factor 40 homolog A
Aliases	FLJ20585; FBP11; HYPA; NY-REN-6; HIP10; FBP-11; FLAF1; Prp40; FNBP3; formin-binding protein 3; formin bindin ......
Chromosomal Location	2q23.3
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	High-throughput screening data (e.g. CRISPR-Cas9, shRNA and RNAi) for T cell-mediated killing. Genetic screen techniques can identify mechanisms of tumor cell resistance (e.g., PTPN2) and sensitivity (e.g., APLNR) to killing by cytotoxic T cells, the central effectors of anti-tumor immunity. After comprehensively searching, eight groups of screening data sets were collected in the current database. In this tab, users can check whether their selected genes cause resistance or increase sensitivity to T cell-mediated killing in various data sets.

> High-throughput Screening

[ TOP ]

Statistical results of PRPF40A in screening data sets for detecting immune reponses.

PMID	Screening System	Cancer Type	Cell Line	Data Set	Statistical Results	Relation to immunity
29301958	CRISPR-Cas9	melanoma	B16F10	Pmel-1 T cell	NA/NS	NA/NS
29301958	CRISPR-Cas9	melanoma	B16F10	OT-1 T cell	NA/NS	NA/NS
28783722	CRISPR-Cas9	melanoma	Mel624	2CT-CRISPR	Second most enriched score: 0.83	Sensitive to T cell-mediated killing
28723893	CRISPR-Cas9	melanoma	B16	GVAX+Anti-PD1	NA/NS	NA/NS
28723893	CRISPR-Cas9	melanoma	B16	GVAX	NA/NS	NA/NS
25691366	RNAi	Breast cancer	MCF7	Luc-CTL assay	NA/NS	NA/NS
24476824	shRNA	melanoma	B16	Primary screen	NA/NS	NA/NS
24476824	shRNA	melanoma	B16	Secondary screen	NA/NS	NA/NS

Summary
Symbol	PRPF40A
Name	PRP40 pre-mRNA processing factor 40 homolog A
Aliases	FLJ20585; FBP11; HYPA; NY-REN-6; HIP10; FBP-11; FLAF1; Prp40; FNBP3; formin-binding protein 3; formin bindin ......
Chromosomal Location	2q23.3
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Transcriptomic and genomic profiling of pre-treated tumor biopsies from responders and non-responders to immunotherapy. These data were used to identify signatures and mechanisms of response to checkpoint blockade (e.g., anti-PDL1 and anti-PD1). One example is that mutations in the gene PBRM1 benefit clinical survival of patients with clear cell renal cell carcinoma. After comprehensively searching, we collected 5 and 6 of transcriptomic and genomic data sets, respectively. In this tab, users can check whether their selected genes have significant difference of expression or mutation between responders and non-responders in various data sets. > Expression difference between responders and non-responders > Mutation difference between responders and non-responders

> Expression difference between responders and non-responders

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Points in the above scatter plot represent the expression difference of PRPF40A in various data sets.

No	PMID	Cancer type	Group	Drug	# Res	# NRes	Log2 (Fold Change)	P value
1	26997480	Melanoma	all	Anti-PD-1 (pembrolizumab and nivolumab)	14	12	-0.065	0.762
2	26997480	Melanoma	MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	6	5	0.06	0.974
3	26997480	Melanoma	non-MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	8	7	-0.16	0.911
4	28552987	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	9	16	-0.037	0.884
5	28552987	Urothelial cancer	smoking	Anti-PD-L1 (atezolizumab)	5	9	-0.171	0.931
6	28552987	Urothelial cancer	non-smoking	Anti-PD-L1 (atezolizumab)	4	7	0.133	0.958
7	29033130	Melanoma	all	Anti-PD-1 (nivolumab)	26	23	0.021	0.962
8	29033130	Melanoma	NIV3-PROG	Anti-PD-1 (nivolumab)	15	11	-0.055	0.978
9	29033130	Melanoma	NIV3-NAIVE	Anti-PD-1 (nivolumab)	11	12	0.107	0.961
10	29301960	Clear cell renal cell carcinoma (ccRCC)	all	Anti-PD-1 (nivolumab)	4	8	0.629	0.639
11	29301960	Clear cell renal cell carcinoma (ccRCC)	VEGFRi	Anti-PD-1 (nivolumab)	2	0	0	1
12	29301960	Clear cell renal cell carcinoma (ccRCC)	non-VEGFRi	Anti-PD-1 (nivolumab)	2	8	0.758	0.721
13	29443960	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	68	230	0.039	0.452

> Mutation difference between responders and non-responders

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Points in the above scatter plot represent the mutation difference of PRPF40A in various data sets.

No	PMID	Cancer type	Group	Drug	# Res	# NRes	% Mut/Res	% Mut/NRes	% Diff (R vs NR)	Pval
1	25765070	Non-small cell lung cancer (NSCLC)	all	Anti-PD-1 (pembrolizumab)	14	17	7.1	0	7.1	0.452
2	25765070	Non-small cell lung cancer (NSCLC)	smoking	Anti-PD-1 (pembrolizumab)	10	3	0	0	0	1
3	25765070	Non-small cell lung cancer (NSCLC)	non-smoking	Anti-PD-1 (pembrolizumab)	4	14	25	0	25	0.222
4	26359337	Melanoma	all	Anti-CTLA-4 (ipilimumab)	27	73	0	0	0	1
5	26359337	Melanoma	BRAFi	Anti-CTLA-4 (ipilimumab)	0	14	0	0	0	1
6	26359337	Melanoma	non-BRAFi	Anti-CTLA-4 (ipilimumab)	27	59	0	0	0	1
7	26997480	Melanoma	all	Anti-PD-1 (pembrolizumab and nivolumab)	21	17	0	11.8	-11.8	0.193
8	26997480	Melanoma	MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	8	6	0	0	0	1
9	26997480	Melanoma	non-MAPKi	Anti-PD-1 (pembrolizumab and nivolumab)	13	11	0	18.2	-18.2	0.199
10	28552987	Urothelial cancer	all	Anti-PD-L1 (atezolizumab)	9	16	0	0	0	1
11	28552987	Urothelial cancer	smoking	Anti-PD-L1 (atezolizumab)	5	9	0	0	0	1
12	28552987	Urothelial cancer	non-smoking	Anti-PD-L1 (atezolizumab)	4	7	0	0	0	1
13	29033130	Melanoma	all	Anti-PD-1 (nivolumab)	38	27	0	0	0	1
14	29033130	Melanoma	NIV3-PROG	Anti-PD-1 (nivolumab)	22	13	0	0	0	1
15	29033130	Melanoma	NIV3-NAIVE	Anti-PD-1 (nivolumab)	16	14	0	0	0	1
16	29301960	Clear cell renal cell carcinoma (ccRCC)	all	Anti-PD-1 (nivolumab)	11	13	0	0	0	1
17	29301960	Clear cell renal cell carcinoma (ccRCC)	VEGFRi	Anti-PD-1 (nivolumab)	6	1	0	0	0	1
18	29301960	Clear cell renal cell carcinoma (ccRCC)	non-VEGFRi	Anti-PD-1 (nivolumab)	5	12	0	0	0	1

Summary
Symbol	PRPF40A
Name	PRP40 pre-mRNA processing factor 40 homolog A
Aliases	FLJ20585; FBP11; HYPA; NY-REN-6; HIP10; FBP-11; FLAF1; Prp40; FNBP3; formin-binding protein 3; formin bindin ......
Chromosomal Location	2q23.3
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between abundance of tumor-infiltrating lymphocytes (TILs) and expression, copy number, methylation, or mutation of PRPF40A. The immune-related signatures of 28 TIL types from Charoentong's study, which can be viewed in the download page. For each cancer type, the relative abundance of TILs were inferred by using gene set variation analysis (GSVA) based on gene expression profile. In this tab, users can examine which kinds of TILs might be regulated by the current gene.

> Lymphocyte [ TOP ]

Summary
Symbol	PRPF40A
Name	PRP40 pre-mRNA processing factor 40 homolog A
Aliases	FLJ20585; FBP11; HYPA; NY-REN-6; HIP10; FBP-11; FLAF1; Prp40; FNBP3; formin-binding protein 3; formin bindin ......
Chromosomal Location	2q23.3
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between three kinds of immunomodulators and expression, copy number, methylation, or mutation of PRPF40A. These immunomo-dulators were collected from Charoentong's study. In this tab, users can examine which immunomodulators might be regulated by PRPF40A. > Immunoinhibitor > Immunostimulator > MHC molecule

> Immunoinhibitor [ TOP ]

> Immunostimulator [ TOP ]

> MHC molecule [ TOP ]

Summary
Symbol	PRPF40A
Name	PRP40 pre-mRNA processing factor 40 homolog A
Aliases	FLJ20585; FBP11; HYPA; NY-REN-6; HIP10; FBP-11; FLAF1; Prp40; FNBP3; formin-binding protein 3; formin bindin ......
Chromosomal Location	2q23.3
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Relations between chemokines (or receptors) and expression, copy number, methylation, or mutation of PRPF40A. In this tab, users can examine which chemokines (or receptors) might be regulated by the current gene. > Chemokine > Receptor

> Chemokine [ TOP ]

> Receptor [ TOP ]

Summary
Symbol	PRPF40A
Name	PRP40 pre-mRNA processing factor 40 homolog A
Aliases	FLJ20585; FBP11; HYPA; NY-REN-6; HIP10; FBP-11; FLAF1; Prp40; FNBP3; formin-binding protein 3; formin bindin ......
Chromosomal Location	2q23.3
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Distribution of PRPF40A expression across immune and molecular subtypes. > Immune subtype > Molecular subtype

> Immune subtype [ TOP ]

> Molecular subtype [ TOP ]

Summary
Symbol	PRPF40A
Name	PRP40 pre-mRNA processing factor 40 homolog A
Aliases	FLJ20585; FBP11; HYPA; NY-REN-6; HIP10; FBP-11; FLAF1; Prp40; FNBP3; formin-binding protein 3; formin bindin ......
Chromosomal Location	2q23.3
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Associations between PRPF40A and clinical features. > Overall survival analysis > Cancer stage > Tumor grade

> Overall survival [ TOP ]

> Stage [ TOP ]

> Grade [ TOP ]

Summary
Symbol	PRPF40A
Name	PRP40 pre-mRNA processing factor 40 homolog A
Aliases	FLJ20585; FBP11; HYPA; NY-REN-6; HIP10; FBP-11; FLAF1; Prp40; FNBP3; formin-binding protein 3; formin bindin ......
Chromosomal Location	2q23.3
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content	Drugs targeting PRPF40A collected from DrugBank database.

> Drugs from DrugBank database [ TOP ]
There is no record.

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