CR2Cancer

Summary
Symbol	ARID4A
Name	AT-rich interaction domain 4A
Aliases	RBP-1; RBBP1; retinoblastoma-binding protein 1; RBBP-1; ARID domain-containing protein 4A; retinoblastoma bi ......
Location	14q23.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Domain, Function and Classification > Gene Ontology > KEGG and Reactome Pathway

> Domain, Function and Classification

[ TOP ]

Domain

PF01388 ARID/BRIGHT DNA binding domain
PF08169 RBB1NT (NUC162) domain
PF11717 RNA binding activity-knot of a chromodomain

Function

Interacts with the viral protein-binding domain of the retinoblastoma protein.

Classification

Class	Modification	Substrate	Product	PubMed
Histone modification write cofactor	Histone acetylation	DNA motif	#	15640446

> Gene Ontology [ TOP ]
Biological Process	GO:0002064 epithelial cell development GO:0002262 myeloid cell homeostasis GO:0006349 regulation of gene expression by genetic imprinting GO:0006476 protein deacetylation GO:0006479 protein methylation GO:0007283 spermatogenesis GO:0007548 sex differentiation GO:0008213 protein alkylation GO:0008406 gonad development GO:0008584 male gonad development GO:0016570 histone modification GO:0016571 histone methylation GO:0016575 histone deacetylation GO:0018022 peptidyl-lysine methylation GO:0018023 peptidyl-lysine trimethylation GO:0018205 peptidyl-lysine modification GO:0030099 myeloid cell differentiation GO:0030218 erythrocyte differentiation GO:0032259 methylation GO:0034101 erythrocyte homeostasis GO:0034770 histone H4-K20 methylation GO:0034773 histone H4-K20 trimethylation GO:0034968 histone lysine methylation GO:0035601 protein deacylation GO:0036124 histone H3-K9 trimethylation GO:0040029 regulation of gene expression, epigenetic GO:0043414 macromolecule methylation GO:0045137 development of primary sexual characteristics GO:0046546 development of primary male sexual characteristics GO:0046661 male sex differentiation GO:0048232 male gamete generation GO:0048608 reproductive structure development GO:0048821 erythrocyte development GO:0048872 homeostasis of number of cells GO:0051567 histone H3-K9 methylation GO:0051568 histone H3-K4 methylation GO:0060008 Sertoli cell differentiation GO:0060009 Sertoli cell development GO:0061458 reproductive system development GO:0061515 myeloid cell development GO:0061647 histone H3-K9 modification GO:0071514 genetic imprinting GO:0080182 histone H3-K4 trimethylation GO:0097368 establishment of Sertoli cell barrier GO:0098732 macromolecule deacylation
Molecular Function	GO:0004407 histone deacetylase activity GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides GO:0019213 deacetylase activity GO:0033558 protein deacetylase activity
Cellular Component	GO:0017053 transcriptional repressor complex

> KEGG and Reactome Pathway [ TOP ]
KEGG	-
Reactome	R-HSA-3247509: Chromatin modifying enzymes R-HSA-4839726: Chromatin organization R-HSA-3214815: HDACs deacetylate histones

Summary
Symbol	ARID4A
Name	AT-rich interaction domain 4A
Aliases	RBP-1; RBBP1; retinoblastoma-binding protein 1; RBBP-1; ARID domain-containing protein 4A; retinoblastoma bi ......
Location	14q23.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Mutation landscape in primary tumor tissue from TCGA > Mutation landscape in cancer cell line from CCLE > All mutations from COSMIC database V81 > Variations from text mining

> The Cancer Genome Atlas (TCGA) [ TOP ]

> Cancer Cell Line Encyclopedia (CCLE) [ TOP ]
There is no record.

> Catalogue of Somatic Mutations in Cancer (COSMIC)

[ TOP ]

COSMIC ID	CDS change	AA change	Mutation Type	Anatomical Site
COSM5424519	c.3768C>T	p.C1256C	Substitution - coding silent	Oesophagus
COSM256345	c.3680C>T	p.A1227V	Substitution - Missense	Large_intestine
COSM470057	c.2094T>A	p.S698S	Substitution - coding silent	Kidney
COSM4150816	c.1845G>C	p.W615C	Substitution - Missense	Kidney
COSM1640116	c.1259delA	p.D423fs*2	Deletion - Frameshift	Stomach
COSM2246111	c.3642delA	p.R1216fs*2	Deletion - Frameshift	Large_intestine
COSM3690131	c.2343A>T	p.E781D	Substitution - Missense	Large_intestine
COSM3361174	c.2240A>G	p.N747S	Substitution - Missense	Kidney
COSM1629348	c.1716C>G	p.P572P	Substitution - coding silent	Liver
COSM3419902	c.2786G>T	p.R929I	Substitution - Missense	Large_intestine
COSM5722205	c.493G>C	p.E165Q	Substitution - Missense	Skin
COSM956533	c.2119G>A	p.E707K	Substitution - Missense	Endometrium
COSM1707394	c.3724C>T	p.P1242S	Substitution - Missense	Skin
COSM956521	c.503G>A	p.R168H	Substitution - Missense	Biliary_tract
COSM1183578	c.1583A>C	p.K528T	Substitution - Missense	Large_intestine
COSM4577914	c.2204delA	p.N736fs*9	Deletion - Frameshift	Bone
COSM1238226	c.713C>T	p.P238L	Substitution - Missense	Oesophagus
COSM4663289	c.3434delC	p.P1146fs*32	Deletion - Frameshift	Large_intestine
COSM956531	c.2039C>T	p.P680L	Substitution - Missense	Endometrium
COSM956540	c.3027T>A	p.L1009L	Substitution - coding silent	Endometrium
COSM5757826	c.585A>G	p.V195V	Substitution - coding silent	Bone
COSM5342464	c.1991C>A	p.S664*	Substitution - Nonsense	Large_intestine
COSM1640116	c.1259delA	p.D423fs*2	Deletion - Frameshift	Large_intestine
COSM1756892	c.1709T>G	p.M570R	Substitution - Missense	Urinary_tract
COSM433178	c.2171A>G	p.N724S	Substitution - Missense	Pancreas
COSM5053997	c.554C>T	p.T185M	Substitution - Missense	Stomach
COSM3814984	c.2476C>T	p.H826Y	Substitution - Missense	Breast
COSM956520	c.157G>T	p.D53Y	Substitution - Missense	Endometrium
COSM459145	c.1963G>A	p.E655K	Substitution - Missense	Cervix
COSM3496566	c.1903G>A	p.G635S	Substitution - Missense	Skin
COSM5027865	c.591T>G	p.S197S	Substitution - coding silent	Breast
COSM5054001	c.3251_3252insA	p.Q1087fs*15	Insertion - Frameshift	Stomach
COSM3496564	c.1101A>G	p.Q367Q	Substitution - coding silent	Skin
COSM3814980	c.375A>T	p.L125F	Substitution - Missense	Breast
COSM223698	c.2384G>A	p.R795K	Substitution - Missense	Skin
COSM1370234	c.1962C>T	p.D654D	Substitution - coding silent	Large_intestine
COSM226298	c.1316C>T	p.P439L	Substitution - Missense	Skin
COSM4566128	c.3129_3130GG>AA	p.E1044K	Substitution - Missense	Skin
COSM1734976	c.3591_3592insA	p.Y1199fs*8	Insertion - Frameshift	Pancreas
COSM1370234	c.1962C>T	p.D654D	Substitution - coding silent	Large_intestine
COSM956519	c.43G>A	p.D15N	Substitution - Missense	Endometrium
COSM4997239	c.319_322delTGTC	p.C107fs*1	Deletion - Frameshift	Pituitary
COSM1726091	c.3124G>T	p.E1042*	Substitution - Nonsense	Liver
COSM1756894	c.3212G>T	p.G1071V	Substitution - Missense	Urinary_tract
COSM3496566	c.1903G>A	p.G635S	Substitution - Missense	Skin
COSM3711584	c.2989C>T	p.P997S	Substitution - Missense	Upper_aerodigestive_tract
COSM956543	c.3647G>T	p.R1216I	Substitution - Missense	Endometrium
COSM1607780	c.1436C>A	p.S479Y	Substitution - Missense	Liver
COSM698264	c.2442G>T	p.Q814H	Substitution - Missense	Lung
COSM278972	c.677G>A	p.R226K	Substitution - Missense	Large_intestine
COSM4517211	c.2989_2990CC>TT	p.P997F	Substitution - Missense	Skin
COSM1607784	c.3690_3694delCATGT	p.M1231fs*>26	Deletion - Frameshift	Liver
COSM5722205	c.493G>C	p.E165Q	Substitution - Missense	Skin
COSM1183584	c.3316G>T	p.G1106*	Substitution - Nonsense	Large_intestine
COSM4663285	c.1092A>G	p.V364V	Substitution - coding silent	Large_intestine
COSM4610300	c.3266G>A	p.R1089H	Substitution - Missense	Haematopoietic_and_lymphoid_tissue
COSM956529	c.1483G>T	p.D495Y	Substitution - Missense	Cervix
COSM956521	c.503G>A	p.R168H	Substitution - Missense	Endometrium
COSM2245990	c.1205C>T	p.S402L	Substitution - Missense	Large_intestine
COSM5903853	c.2147C>T	p.S716F	Substitution - Missense	Skin
COSM318774	c.2774T>C	p.L925P	Substitution - Missense	Lung
COSM1707392	c.3401C>T	p.P1134L	Substitution - Missense	Skin
COSM3956102	c.1011C>T	p.G337G	Substitution - coding silent	Lung
COSM4538735	c.2596G>A	p.E866K	Substitution - Missense	Skin
COSM3814984	c.2476C>T	p.H826Y	Substitution - Missense	Skin
COSM1370238	c.2607A>T	p.I869I	Substitution - coding silent	Upper_aerodigestive_tract
COSM4610300	c.3266G>A	p.R1089H	Substitution - Missense	Large_intestine
COSM1300701	c.3011C>G	p.S1004*	Substitution - Nonsense	Urinary_tract
COSM4834545	c.2905G>A	p.E969K	Substitution - Missense	Cervix
COSM5596291	c.644C>T	p.S215L	Substitution - Missense	Skin
COSM4633914	c.1169G>T	p.R390I	Substitution - Missense	Large_intestine
COSM1370224	c.42C>T	p.T14T	Substitution - coding silent	Large_intestine
COSM5362605	c.865G>T	p.E289*	Substitution - Nonsense	Large_intestine
COSM1607782	c.1655+3A>G	p.?	Unknown	Liver
COSM4611727	c.2329_2330insA	p.T779fs*5	Insertion - Frameshift	Large_intestine
COSM278973	c.1753C>T	p.R585*	Substitution - Nonsense	Large_intestine
COSM3496568	c.2432C>T	p.S811L	Substitution - Missense	Skin
COSM956534	c.2324A>C	p.K775T	Substitution - Missense	Endometrium
COSM956542	c.3438G>A	p.P1146P	Substitution - coding silent	Endometrium
COSM698271	c.501G>T	p.K167N	Substitution - Missense	Lung
COSM956535	c.2401G>T	p.D801Y	Substitution - Missense	Endometrium
COSM698268	c.1391T>G	p.L464*	Substitution - Nonsense	Lung
COSM3419898	c.232G>A	p.A78T	Substitution - Missense	Liver
COSM956532	c.2078C>A	p.S693*	Substitution - Nonsense	Endometrium
COSM109442	c.1914G>A	p.K638K	Substitution - coding silent	Skin
COSM5639581	c.2620G>C	p.G874R	Substitution - Missense	Oesophagus
COSM223697	c.1404+1G>A	p.?	Unknown	Skin
COSM1660104	c.1997G>C	p.R666P	Substitution - Missense	Kidney
COSM4791702	c.3403C>G	p.Q1135E	Substitution - Missense	Liver
COSM109536	c.1926G>A	p.K642K	Substitution - coding silent	Skin
COSM1640116	c.1259delA	p.D423fs*2	Deletion - Frameshift	Stomach
COSM1607780	c.1436C>A	p.S479Y	Substitution - Missense	Liver
COSM4622982	c.3725C>A	p.P1242H	Substitution - Missense	Large_intestine
COSM1640116	c.1259delA	p.D423fs*2	Deletion - Frameshift	Stomach
COSM4167491	c.2635A>G	p.N879D	Substitution - Missense	Adrenal_gland
COSM5078984	c.2330delA	p.T779fs*26	Deletion - Frameshift	Large_intestine
COSM5923063	c.2401G>A	p.D801N	Substitution - Missense	Skin
COSM4051449	c.3481C>G	p.P1161A	Substitution - Missense	Stomach
COSM2245998	c.1386A>G	p.I462M	Substitution - Missense	Large_intestine
COSM553342	c.1684G>A	p.E562K	Substitution - Missense	Urinary_tract
COSM4663287	c.2288_2289delGA	p.N765fs*1	Deletion - Frameshift	Large_intestine
COSM159181	c.3763G>C	p.E1255Q	Substitution - Missense	Breast
COSM5034088	c.2351A>C	p.K784T	Substitution - Missense	Skin
COSM4414089	c.754A>C	p.S252R	Substitution - Missense	Kidney
COSM5799880	c.1869G>C	p.V623V	Substitution - coding silent	Breast
COSM5053999	c.2312delT	p.F772fs*33	Deletion - Frameshift	Stomach
COSM1183582	c.1446G>T	p.K482N	Substitution - Missense	Large_intestine
COSM3419898	c.232G>A	p.A78T	Substitution - Missense	Liver
COSM4051447	c.3049C>T	p.R1017*	Substitution - Nonsense	Stomach
COSM73730	c.1399C>G	p.P467A	Substitution - Missense	Ovary
COSM5722205	c.493G>C	p.E165Q	Substitution - Missense	Skin
COSM5889240	c.2960C>T	p.S987F	Substitution - Missense	Skin
COSM1707390	c.3301G>T	p.E1101*	Substitution - Nonsense	Skin
COSM292366	c.3214C>T	p.Q1072*	Substitution - Nonsense	Large_intestine
COSM1640116	c.1259delA	p.D423fs*2	Deletion - Frameshift	Stomach
COSM698267	c.1459G>T	p.E487*	Substitution - Nonsense	Lung
COSM2246008	c.1544A>T	p.N515I	Substitution - Missense	Large_intestine
COSM3401370	c.3041A>G	p.D1014G	Substitution - Missense	Central_nervous_system
COSM3711584	c.2989C>T	p.P997S	Substitution - Missense	Upper_aerodigestive_tract
COSM3956104	c.1369A>T	p.S457C	Substitution - Missense	Lung
COSM956536	c.2569C>T	p.R857W	Substitution - Missense	Endometrium
COSM3419898	c.232G>A	p.A78T	Substitution - Missense	Large_intestine
COSM5000712	c.2335A>G	p.T779A	Substitution - Missense	Pancreas
COSM5971187	c.9G>A	p.A3A	Substitution - coding silent	Upper_aerodigestive_tract
COSM2246070	c.2734C>T	p.P912S	Substitution - Missense	Large_intestine
COSM5667460	c.1255G>C	p.E419Q	Substitution - Missense	Soft_tissue
COSM309270	c.2551A>G	p.K851E	Substitution - Missense	Soft_tissue
COSM348955	c.2260C>T	p.P754S	Substitution - Missense	Lung
COSM433179	c.3109C>G	p.Q1037E	Substitution - Missense	Breast
COSM1245465	c.1268A>G	p.D423G	Substitution - Missense	Stomach
COSM1587495	c.3G>T	p.M1I	Substitution - Missense	Endometrium
COSM956539	c.3014T>C	p.V1005A	Substitution - Missense	Endometrium
COSM1678015	c.3060A>C	p.K1020N	Substitution - Missense	Large_intestine
COSM1300699	c.2437G>T	p.G813C	Substitution - Missense	Urinary_tract
COSM956541	c.3083A>C	p.E1028A	Substitution - Missense	Endometrium
COSM416656	c.2533G>A	p.E845K	Substitution - Missense	Urinary_tract
COSM5705738	c.1939-1G>T	p.?	Unknown	Haematopoietic_and_lymphoid_tissue
COSM3496558	c.445C>T	p.P149S	Substitution - Missense	Skin
COSM1370224	c.42C>T	p.T14T	Substitution - coding silent	Large_intestine
COSM4417217	c.3188A>G	p.Q1063R	Substitution - Missense	Haematopoietic_and_lymphoid_tissue
COSM1370228	c.1258_1259insA	p.D423fs*24	Insertion - Frameshift	Large_intestine
COSM3496562	c.998C>T	p.P333L	Substitution - Missense	Skin
COSM3814982	c.1353C>T	p.I451I	Substitution - coding silent	Stomach
COSM3956106	c.1621G>T	p.D541Y	Substitution - Missense	Lung
COSM1748905	c.2677G>A	p.E893K	Substitution - Missense	Urinary_tract
COSM5424521	c.3735A>G	p.S1245S	Substitution - coding silent	Oesophagus
COSM3690129	c.2342A>T	p.E781V	Substitution - Missense	Large_intestine
COSM1640116	c.1259delA	p.D423fs*2	Deletion - Frameshift	Large_intestine
COSM5424519	c.3768C>T	p.C1256C	Substitution - coding silent	Haematopoietic_and_lymphoid_tissue
COSM1748905	c.2677G>A	p.E893K	Substitution - Missense	Urinary_tract
COSM3793750	c.1690G>A	p.E564K	Substitution - Missense	Urinary_tract
COSM956528	c.1293T>C	p.A431A	Substitution - coding silent	Endometrium
COSM1756892	c.1709T>G	p.M570R	Substitution - Missense	Urinary_tract
COSM4513626	c.945C>T	p.F315F	Substitution - coding silent	Skin
COSM3401368	c.161A>G	p.D54G	Substitution - Missense	Central_nervous_system
COSM4747329	c.3295delA	p.N1100fs*18	Deletion - Frameshift	Stomach
COSM5037821	c.662+6T>C	p.?	Unknown	Skin
COSM4633916	c.2071G>T	p.G691*	Substitution - Nonsense	Large_intestine
COSM956523	c.663-1G>T	p.?	Unknown	Endometrium
COSM1578934	c.3231T>G	p.D1077E	Substitution - Missense	Meninges
COSM127361	c.1920A>G	p.K640K	Substitution - coding silent	Upper_aerodigestive_tract
COSM956524	c.714G>A	p.P238P	Substitution - coding silent	Endometrium
COSM956522	c.644C>A	p.S215*	Substitution - Nonsense	Endometrium
COSM3496554	c.38G>A	p.G13E	Substitution - Missense	Skin
COSM259505	c.3654A>C	p.K1218N	Substitution - Missense	Large_intestine
COSM383138	c.2862T>C	p.P954P	Substitution - coding silent	Lung
COSM1300697	c.1970G>C	p.R657T	Substitution - Missense	Urinary_tract
COSM22851	c.8C>T	p.A3V	Substitution - Missense	Lung
COSM2246048	c.2209C>T	p.P737S	Substitution - Missense	Skin
COSM1756894	c.3212G>T	p.G1071V	Substitution - Missense	Urinary_tract
COSM1707392	c.3401C>T	p.P1134L	Substitution - Missense	Skin
COSM3677971	c.1590G>A	p.K530K	Substitution - coding silent	Haematopoietic_and_lymphoid_tissue
COSM3496570	c.2605A>T	p.I869L	Substitution - Missense	Skin
COSM5754600	c.295C>T	p.R99*	Substitution - Nonsense	Large_intestine
COSM1640116	c.1259delA	p.D423fs*2	Deletion - Frameshift	Large_intestine
COSM1283499	c.361G>C	p.D121H	Substitution - Missense	Autonomic_ganglia
COSM459144	c.2281G>C	p.E761Q	Substitution - Missense	Cervix
COSM5508970	c.1351A>G	p.I451V	Substitution - Missense	Biliary_tract
COSM4756130	c.3277C>T	p.R1093*	Substitution - Nonsense	Stomach
COSM1740080	c.2444A>T	p.N815I	Substitution - Missense	Haematopoietic_and_lymphoid_tissue
COSM4051447	c.3049C>T	p.R1017*	Substitution - Nonsense	Large_intestine
COSM1640116	c.1259delA	p.D423fs*2	Deletion - Frameshift	Large_intestine
COSM698266	c.1673A>G	p.K558R	Substitution - Missense	Lung
COSM698270	c.670A>G	p.I224V	Substitution - Missense	Lung
COSM80882	c.2622A>T	p.G874G	Substitution - coding silent	Ovary
COSM553342	c.1684G>A	p.E562K	Substitution - Missense	Urinary_tract
COSM4766637	c.2095G>A	p.D699N	Substitution - Missense	Stomach
COSM4796950	c.907C>T	p.P303S	Substitution - Missense	Liver
COSM2246000	c.1409G>A	p.R470Q	Substitution - Missense	Large_intestine
COSM3386599	c.1275A>C	p.E425D	Substitution - Missense	Pancreas
COSM4774720	c.3212-7A>T	p.?	Unknown	Skin
COSM3734519	c.3407A>C	p.K1136T	Substitution - Missense	Pancreas
COSM5470256	c.1997G>A	p.R666Q	Substitution - Missense	Large_intestine
COSM698263	c.2645C>G	p.S882C	Substitution - Missense	Lung
COSM5424521	c.3735A>G	p.S1245S	Substitution - coding silent	Haematopoietic_and_lymphoid_tissue
COSM5722205	c.493G>C	p.E165Q	Substitution - Missense	Skin
COSM5495548	c.668C>G	p.S223C	Substitution - Missense	Biliary_tract
COSM956537	c.2584C>T	p.Q862*	Substitution - Nonsense	Endometrium
COSM5444419	c.3148G>C	p.E1050Q	Substitution - Missense	Oesophagus
COSM5602845	c.1054C>T	p.H352Y	Substitution - Missense	Skin
COSM159181	c.3763G>C	p.E1255Q	Substitution - Missense	Cervix
COSM215591	c.3037C>A	p.Q1013K	Substitution - Missense	Central_nervous_system
COSM2246010	c.1562G>T	p.R521I	Substitution - Missense	Large_intestine
COSM309270	c.2551A>G	p.K851E	Substitution - Missense	Lung
COSM4774720	c.3212-7A>T	p.?	Unknown	Stomach
COSM1515705	c.2851C>G	p.L951V	Substitution - Missense	Urinary_tract
COSM1640116	c.1259delA	p.D423fs*2	Deletion - Frameshift	Large_intestine
COSM4633918	c.2257C>T	p.Q753*	Substitution - Nonsense	Large_intestine
COSM1678015	c.3060A>C	p.K1020N	Substitution - Missense	Large_intestine
COSM3496560	c.799G>A	p.D267N	Substitution - Missense	Skin
COSM274042	c.3483G>A	p.P1161P	Substitution - coding silent	Large_intestine
COSM956526	c.1171A>C	p.K391Q	Substitution - Missense	Endometrium
COSM4791702	c.3403C>G	p.Q1135E	Substitution - Missense	Liver
COSM1183580	c.1889G>A	p.W630*	Substitution - Nonsense	Large_intestine
COSM459146	c.1525A>G	p.T509A	Substitution - Missense	Cervix
COSM956527	c.1223G>A	p.R408K	Substitution - Missense	Endometrium
COSM470058	c.2745A>C	p.I915I	Substitution - coding silent	Kidney
COSM1728358	c.2974C>T	p.P992S	Substitution - Missense	Liver
COSM4051443	c.962A>C	p.K321T	Substitution - Missense	Stomach
COSM698265	c.2219C>G	p.S740C	Substitution - Missense	Lung
COSM69716	c.2605A>G	p.I869V	Substitution - Missense	Ovary
COSM4817411	c.126G>C	p.L42L	Substitution - coding silent	Cervix
COSM4611727	c.2329_2330insA	p.T779fs*5	Insertion - Frameshift	Upper_aerodigestive_tract
COSM956519	c.43G>A	p.D15N	Substitution - Missense	Endometrium
COSM3386597	c.907-8C>A	p.?	Unknown	Pancreas
COSM698269	c.1144T>G	p.S382A	Substitution - Missense	Lung
COSM4611727	c.2329_2330insA	p.T779fs*5	Insertion - Frameshift	Large_intestine
COSM5560176	c.2869T>A	p.L957M	Substitution - Missense	Prostate
COSM5558416	c.3349C>T	p.L1117L	Substitution - coding silent	Prostate
COSM274042	c.3483G>A	p.P1161P	Substitution - coding silent	Large_intestine
COSM1370238	c.2607A>T	p.I869I	Substitution - coding silent	Upper_aerodigestive_tract
COSM1707388	c.1485T>G	p.D495E	Substitution - Missense	Skin
COSM5568784	c.212C>T	p.S71F	Substitution - Missense	Prostate
COSM4453609	c.3218A>T	p.K1073M	Substitution - Missense	Skin
COSM5816170	c.275-2A>T	p.?	Unknown	Liver
COSM5478707	c.117+3A>C	p.?	Unknown	Large_intestine
COSM3419900	c.2427T>G	p.I809M	Substitution - Missense	Large_intestine
COSM1678013	c.163C>T	p.Q55*	Substitution - Nonsense	Lung
COSM956529	c.1483G>T	p.D495Y	Substitution - Missense	Endometrium
COSM4663283	c.535_536insTT	p.S180fs*1	Insertion - Frameshift	Large_intestine
COSM4908813	c.3176G>C	p.S1059T	Substitution - Missense	Central_nervous_system
COSM5961578	c.2612delT	p.I871fs*7	Deletion - Frameshift	Adrenal_gland
COSM4513079	c.926C>T	p.P309L	Substitution - Missense	Skin
COSM5654282	c.457G>C	p.D153H	Substitution - Missense	Haematopoietic_and_lymphoid_tissue
COSM4051440	c.502C>T	p.R168C	Substitution - Missense	Stomach
COSM956519	c.43G>A	p.D15N	Substitution - Missense	Endometrium
COSM1607782	c.1655+3A>G	p.?	Unknown	Liver
COSM3496556	c.57G>A	p.K19K	Substitution - coding silent	Skin
COSM2245992	c.1230T>C	p.V410V	Substitution - coding silent	Large_intestine
COSM956525	c.1169G>A	p.R390K	Substitution - Missense	Endometrium
COSM459143	c.3324C>T	p.S1108S	Substitution - coding silent	Cervix
COSM4663291	c.3470G>C	p.R1157T	Substitution - Missense	Large_intestine
COSM5818182	c.3679G>T	p.A1227S	Substitution - Missense	Liver
COSM1370236	c.2599delA	p.I869fs*1	Deletion - Frameshift	Large_intestine
COSM4796950	c.907C>T	p.P303S	Substitution - Missense	Liver
COSM4577912	c.1538A>C	p.K513T	Substitution - Missense	Bone
COSM192773	c.640C>T	p.R214*	Substitution - Nonsense	Stomach
COSM4577910	c.1484_1486delATA	p.N496delN	Deletion - In frame	Bone
COSM3361172	c.517G>T	p.E173*	Substitution - Nonsense	Kidney
COSM3814982	c.1353C>T	p.I451I	Substitution - coding silent	Breast
COSM956530	c.1938+1G>T	p.?	Unknown	Endometrium
COSM2246093	c.3229G>A	p.D1077N	Substitution - Missense	Large_intestine
COSM4051445	c.1754G>A	p.R585Q	Substitution - Missense	Stomach
COSM2246111	c.3642delA	p.R1216fs*2	Deletion - Frameshift	Large_intestine
COSM3983621	c.2041T>A	p.Y681N	Substitution - Missense	Ovary
COSM5470258	c.2592G>A	p.S864S	Substitution - coding silent	Large_intestine
COSM274042	c.3483G>A	p.P1161P	Substitution - coding silent	Endometrium
COSM4834303	c.108G>A	p.V36V	Substitution - coding silent	Cervix
COSM956538	c.2857G>A	p.G953R	Substitution - Missense	Endometrium

> Text Mining based Variations

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PMID	Variation	Cancer	Evidence
24382590	Mutation	Colorectal Carcinoma	We found that in addition to ARID1A, which was mutated in 39% of the tumors (18/46), also ARID1B (13%, 6/46), ARID2 (13%, 6/46) and ARID4A (20%, 9/46) were frequently mutated.

Summary
Symbol	ARID4A
Name	AT-rich interaction domain 4A
Aliases	RBP-1; RBBP1; retinoblastoma-binding protein 1; RBBP-1; ARID domain-containing protein 4A; retinoblastoma bi ......
Location	14q23.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Post-translational modification (PTM)

> Post-translational modification (PTM)

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Filter By:

Uniprot ID	Position	Amino Acid	Description	Upstream Enzyme	Affected By Mutation	Amino Acid Sequence Variant
P29374	716	S	Phosphoserine	-	No	None detected
P29374	864	S	Phosphoserine	-	No	None detected
P29374	1109	S	Phosphoserine	-	No	None detected
P29374	1145	S	Phosphoserine	-	No	None detected

Summary
Symbol	ARID4A
Name	AT-rich interaction domain 4A
Aliases	RBP-1; RBBP1; retinoblastoma-binding protein 1; RBBP-1; ARID domain-containing protein 4A; retinoblastoma bi ......
Location	14q23.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Expression analysis in primary tumor tissue from TCGA > Expression level in cancer cell line from CCLE > Expression level in human normal tissue from HPA > Text mining based expression change

> The Cancer Genome Atlas (TCGA)

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Differential expression analysis for cancers with more than 10 normal samples

Cancer	Full Name	# N	# T	Median (N)	Median (T)	LogFC	Adj. P	Status
BLCA	Bladder urothelial carcinoma	19	408	4.84	4.054	-0.765	1.32e-06	Under
BRCA	Breast invasive carcinoma	112	1100	5.4	4.699	-0.729	2.41e-29	Under
CESC	Cervical and endocervical cancers	3	306	4.949	4.232	NA	NA	NA
COAD	Colon adenocarcinoma	41	459	4.667	4.168	-0.543	2.42e-06	NS
ESCA	Esophageal carcinoma	11	185	6.107	5.343	-0.682	0.00163	Under
GBM	Glioblastoma multiforme	5	166	5.369	4.471	NA	NA	NA
HNSC	Head and Neck squamous cell carcinoma	44	522	4.081	3.81	-0.339	0.000615	NS
KIRC	Kidney renal clear cell carcinoma	72	534	5.025	4.94	-0.074	0.326	NS
KIRP	Kidney renal papillary cell carcinoma	32	291	4.746	4.304	-0.481	0.00027	NS
LAML	Acute Myeloid Leukemia	0	173	NA	6.646	NA	NA	NA
LGG	Brain Lower Grade Glioma	0	530	NA	5.334	NA	NA	NA
LIHC	Liver hepatocellular carcinoma	50	373	4.52	3.669	-0.893	3.1e-13	Under
LUAD	Lung adenocarcinoma	59	517	5.272	4.5	-0.695	1.14e-18	Under
LUSC	Lung squamous cell carcinoma	51	501	5.142	4.031	-1.048	2.68e-38	Under
OV	Ovarian serous cystadenocarcinoma	0	307	NA	4.464	NA	NA	NA
PAAD	Pancreatic adenocarcinoma	4	179	4.723	4.643	NA	NA	NA
PCPG	Pheochromocytoma and Paraganglioma	3	184	3.916	4.615	NA	NA	NA
PRAD	Prostate adenocarcinoma	52	498	4.795	4.419	-0.387	3.04e-07	NS
READ	Rectum adenocarcinoma	10	167	4.735	4.091	-0.8	0.01	Under
SARC	Sarcoma	2	263	4.202	4.273	NA	NA	NA
SKCM	Skin Cutaneous Melanoma	1	472	4.945	4.074	NA	NA	NA
STAD	Stomach adenocarcinoma	35	415	5.204	5.367	-0.02	0.886	NS
TGCT	Testicular Germ Cell Tumors	0	156	NA	4.336	NA	NA	NA
THCA	Thyroid carcinoma	59	509	5.211	4.962	-0.23	0.000519	NS
THYM	Thymoma	2	120	5.386	4.671	NA	NA	NA
UCEC	Uterine Corpus Endometrial Carcinoma	35	546	4.815	3.786	-1.04	3.33e-17	Under

> Cancer Cell Line Encyclopedia (CCLE)

[ TOP ]

Tissue	Cell Line	Expression Level (Microarray)
Autonomic ganglia	CHP126	7
Autonomic ganglia	CHP212	6.6
Autonomic ganglia	IMR32	6.9
Autonomic ganglia	KELLY	6.5
Autonomic ganglia	KPNRTBM1	7.6
Autonomic ganglia	KPNSI9S	6.2
Autonomic ganglia	KPNYN	7
Autonomic ganglia	MHHNB11	6.7
Autonomic ganglia	NB1	6.5
Autonomic ganglia	NH6	6.6
Autonomic ganglia	SHSY5Y	7.6
Autonomic ganglia	SIMA	7.6
Autonomic ganglia	SKNAS	6.8
Autonomic ganglia	SKNBE2	7.5
Autonomic ganglia	SKNDZ	6.7
Autonomic ganglia	SKNFI	7.1
Autonomic ganglia	SKNSH	6.2
Biliary tract	HUCCT1	6.6
Biliary tract	HUH28	6
Biliary tract	SNU1079	7.4
Biliary tract	SNU1196	6.5
Biliary tract	SNU245	6.9
Biliary tract	SNU308	6.2
Biliary tract	SNU478	6.3
Bone	143B	6.5
Bone	A673	6.8
Bone	CADOES1	7.3
Bone	CAL78	5.6
Bone	G292CLONEA141B1	6.8
Bone	HOS	7.2
Bone	HS706T	5.9
Bone	HS737T	6.3
Bone	HS819T	6.6
Bone	HS821T	6.2
Bone	HS822T	6.7
Bone	HS863T	6.8
Bone	HS870T	6.2
Bone	HS888T	6.6
Bone	MG63	5.6
Bone	MHHES1	7.8
Bone	OUMS27	6.3
Bone	RDES	6.1
Bone	SJSA1	6.1
Bone	SKES1	7
Bone	SKNMC	7.5
Bone	SW1353	5.8
Bone	T173	6.2
Bone	TC71	6.1
Bone	U2OS	6.8
Breast	AU565	6.9
Breast	BT20	5.8
Breast	BT474	7
Breast	BT483	8.1
Breast	BT549	5.7
Breast	CAL120	6.8
Breast	CAL148	6.7
Breast	CAL51	7
Breast	CAL851	5.8
Breast	CAMA1	7.1
Breast	DU4475	7.2
Breast	EFM192A	7.1
Breast	EFM19	7.2
Breast	EVSAT	6.5
Breast	HCC1143	6.7
Breast	HCC1187	6.8
Breast	HCC1395	7.1
Breast	HCC1419	6.9
Breast	HCC1428	7.9
Breast	HCC1500	7.1
Breast	HCC1569	6.1
Breast	HCC1599	7.2
Breast	HCC1806	6.3
Breast	HCC1937	7.2
Breast	HCC1954	6.2
Breast	HCC202	6.7
Breast	HCC2157	6.1
Breast	HCC2218	6.8
Breast	HCC38	7.1
Breast	HCC70	6.4
Breast	HDQP1	7.1
Breast	HMC18	6.3
Breast	HS274T	6.7
Breast	HS281T	6.4
Breast	HS343T	6.3
Breast	HS578T	6.1
Breast	HS606T	6.4
Breast	HS739T	6.3
Breast	HS742T	6.4
Breast	JIMT1	6.3
Breast	KPL1	7.6
Breast	MCF7	7.5
Breast	MDAMB134VI	7.6
Breast	MDAMB157	6.9
Breast	MDAMB175VII	7
Breast	MDAMB231	6.2
Breast	MDAMB361	5.8
Breast	MDAMB415	6.2
Breast	MDAMB436	5.9
Breast	MDAMB453	7.5
Breast	MDAMB468	7
Breast	SKBR3	6.8
Breast	T47D	7.3
Breast	UACC812	7.4
Breast	UACC893	6.6
Breast	YMB1	7
Breast	ZR751	7.7
Breast	ZR7530	7.5
Central nervous system	1321N1	6.5
Central nervous system	42MGBA	6.6
Central nervous system	8MGBA	6.2
Central nervous system	A172	5.8
Central nervous system	AM38	5.8
Central nervous system	BECKER	5.8
Central nervous system	CAS1	6.4
Central nervous system	CCFSTTG1	6.2
Central nervous system	D283MED	6.2
Central nervous system	D341MED	7.3
Central nervous system	DAOY	6.4
Central nervous system	DBTRG05MG	5.7
Central nervous system	DKMG	6.7
Central nervous system	GAMG	5.6
Central nervous system	GB1	5.7
Central nervous system	GI1	6.2
Central nervous system	GMS10	6.9
Central nervous system	GOS3	5.6
Central nervous system	H4	6.2
Central nervous system	HS683	6.2
Central nervous system	KALS1	6.5
Central nervous system	KG1C	6.3
Central nervous system	KNS42	6.3
Central nervous system	KNS60	6.8
Central nervous system	KNS81	5.8
Central nervous system	KS1	6.6
Central nervous system	LN18	6.2
Central nervous system	LN229	5.7
Central nervous system	M059K	6.1
Central nervous system	MOGGCCM	5.9
Central nervous system	MOGGUVW	6.5
Central nervous system	NMCG1	5.5
Central nervous system	ONS76	6.1
Central nervous system	SF126	6.3
Central nervous system	SF295	5.3
Central nervous system	SNB19	5.6
Central nervous system	SNU1105	5.6
Central nervous system	SNU201	5.6
Central nervous system	SNU466	5.8
Central nervous system	SNU489	5.7
Central nervous system	SNU626	6.4
Central nervous system	SNU738	6.2
Central nervous system	SW1088	6
Central nervous system	SW1783	6.3
Central nervous system	T98G	5.7
Central nervous system	TM31	6.8
Central nervous system	U118MG	5.8
Central nervous system	U138MG	6.5
Central nervous system	U251MG	5.9
Central nervous system	U87MG	5.7
Central nervous system	YH13	6.7
Central nervous system	YKG1	6.7
Endometrium	AN3CA	6.6
Endometrium	COLO684	6.7
Endometrium	EFE184	5.9
Endometrium	EN	6.7
Endometrium	ESS1	6.5
Endometrium	HEC108	7.1
Endometrium	HEC151	6
Endometrium	HEC1A	6.5
Endometrium	HEC1B	7.1
Endometrium	HEC251	6.8
Endometrium	HEC265	6
Endometrium	HEC50B	6.7
Endometrium	HEC59	6.2
Endometrium	HEC6	6.4
Endometrium	ISHIKAWAHERAKLIO02ER	7.2
Endometrium	JHUEM1	7.2
Endometrium	JHUEM2	6.8
Endometrium	JHUEM3	6.8
Endometrium	KLE	5.5
Endometrium	MFE280	6.4
Endometrium	MFE296	6.1
Endometrium	MFE319	5.9
Endometrium	RL952	6.4
Endometrium	SNGM	6
Endometrium	SNU1077	7
Endometrium	SNU685	6.2
Endometrium	TEN	7.4
Haematopoietic and lymphoid	697	7
Haematopoietic and lymphoid	A3KAW	6.2
Haematopoietic and lymphoid	A4FUK	6.7
Haematopoietic and lymphoid	ALLSIL	7.6
Haematopoietic and lymphoid	AML193	7.2
Haematopoietic and lymphoid	AMO1	6.7
Haematopoietic and lymphoid	BCP1	6
Haematopoietic and lymphoid	BDCM	6.7
Haematopoietic and lymphoid	BL41	7.7
Haematopoietic and lymphoid	BL70	7.5
Haematopoietic and lymphoid	BV173	7.6
Haematopoietic and lymphoid	CA46	8.2
Haematopoietic and lymphoid	CI1	7.1
Haematopoietic and lymphoid	CMK115	7.2
Haematopoietic and lymphoid	CMK86	7.4
Haematopoietic and lymphoid	CMK	6.7
Haematopoietic and lymphoid	CMLT1	7.4
Haematopoietic and lymphoid	COLO775	6
Haematopoietic and lymphoid	DAUDI	7.7
Haematopoietic and lymphoid	DB	7.8
Haematopoietic and lymphoid	DEL	8.1
Haematopoietic and lymphoid	DND41	7.1
Haematopoietic and lymphoid	DOHH2	7.7
Haematopoietic and lymphoid	EB1	7.7
Haematopoietic and lymphoid	EB2	7.7
Haematopoietic and lymphoid	EHEB	7.1
Haematopoietic and lymphoid	EJM	7
Haematopoietic and lymphoid	EM2	7.5
Haematopoietic and lymphoid	EOL1	8.2
Haematopoietic and lymphoid	F36P	7
Haematopoietic and lymphoid	GA10	7.6
Haematopoietic and lymphoid	GDM1	7.5
Haematopoietic and lymphoid	GRANTA519	7.6
Haematopoietic and lymphoid	HDLM2	6.8
Haematopoietic and lymphoid	HDMYZ	6.2
Haematopoietic and lymphoid	HEL9217	6.2
Haematopoietic and lymphoid	HEL	6.9
Haematopoietic and lymphoid	HH	7.2
Haematopoietic and lymphoid	HL60	7.6
Haematopoietic and lymphoid	HPBALL	7.4
Haematopoietic and lymphoid	HS604T	6.6
Haematopoietic and lymphoid	HS611T	6.6
Haematopoietic and lymphoid	HS616T	6.4
Haematopoietic and lymphoid	HS751T	6.5
Haematopoietic and lymphoid	HT	8.2
Haematopoietic and lymphoid	HTK	6.4
Haematopoietic and lymphoid	HUNS1	5.9
Haematopoietic and lymphoid	HUT102	7.5
Haematopoietic and lymphoid	HUT78	6.3
Haematopoietic and lymphoid	JEKO1	6.6
Haematopoietic and lymphoid	JK1	7.9
Haematopoietic and lymphoid	JM1	7.6
Haematopoietic and lymphoid	JURKAT	7.8
Haematopoietic and lymphoid	JURLMK1	7.5
Haematopoietic and lymphoid	JVM2	7.3
Haematopoietic and lymphoid	JVM3	7.3
Haematopoietic and lymphoid	K562	6.4
Haematopoietic and lymphoid	KARPAS299	7.7
Haematopoietic and lymphoid	KARPAS422	9
Haematopoietic and lymphoid	KARPAS620	8.3
Haematopoietic and lymphoid	KASUMI1	8.9
Haematopoietic and lymphoid	KASUMI2	7.1
Haematopoietic and lymphoid	KASUMI6	8
Haematopoietic and lymphoid	KCL22	7.2
Haematopoietic and lymphoid	KE37	7.9
Haematopoietic and lymphoid	KE97	6.7
Haematopoietic and lymphoid	KG1	7.6
Haematopoietic and lymphoid	KHM1B	6.3
Haematopoietic and lymphoid	KIJK	6.5
Haematopoietic and lymphoid	KMH2	7.4
Haematopoietic and lymphoid	KMM1	7.4
Haematopoietic and lymphoid	KMS11	6.5
Haematopoietic and lymphoid	KMS12BM	7.2
Haematopoietic and lymphoid	KMS18	7.5
Haematopoietic and lymphoid	KMS20	7.1
Haematopoietic and lymphoid	KMS21BM	6.2
Haematopoietic and lymphoid	KMS26	6.5
Haematopoietic and lymphoid	KMS27	6.3
Haematopoietic and lymphoid	KMS28BM	7
Haematopoietic and lymphoid	KMS34	5.9
Haematopoietic and lymphoid	KO52	7.8
Haematopoietic and lymphoid	KOPN8	6.5
Haematopoietic and lymphoid	KU812	8.1
Haematopoietic and lymphoid	KYO1	6.6
Haematopoietic and lymphoid	L1236	7.2
Haematopoietic and lymphoid	L363	8.1
Haematopoietic and lymphoid	L428	7
Haematopoietic and lymphoid	L540	7.3
Haematopoietic and lymphoid	LAMA84	7.6
Haematopoietic and lymphoid	LOUCY	7.6
Haematopoietic and lymphoid	LP1	7.2
Haematopoietic and lymphoid	M07E	7.8
Haematopoietic and lymphoid	MC116	7.3
Haematopoietic and lymphoid	ME1	6.9
Haematopoietic and lymphoid	MEC1	8.2
Haematopoietic and lymphoid	MEC2	7.5
Haematopoietic and lymphoid	MEG01	7.1
Haematopoietic and lymphoid	MHHCALL2	7.8
Haematopoietic and lymphoid	MHHCALL3	8
Haematopoietic and lymphoid	MHHCALL4	7.9
Haematopoietic and lymphoid	MINO	7.4
Haematopoietic and lymphoid	MJ	7
Haematopoietic and lymphoid	MM1S	5.6
Haematopoietic and lymphoid	MOLM13	7.6
Haematopoietic and lymphoid	MOLM16	7.3
Haematopoietic and lymphoid	MOLM6	7.3
Haematopoietic and lymphoid	MOLP2	6.2
Haematopoietic and lymphoid	MOLP8	7.4
Haematopoietic and lymphoid	MOLT13	8.1
Haematopoietic and lymphoid	MOLT16	8
Haematopoietic and lymphoid	MOLT4	7.1
Haematopoietic and lymphoid	MONOMAC1	7.7
Haematopoietic and lymphoid	MONOMAC6	7.7
Haematopoietic and lymphoid	MOTN1	6.9
Haematopoietic and lymphoid	MUTZ5	7.4
Haematopoietic and lymphoid	MV411	8
Haematopoietic and lymphoid	NALM19	7
Haematopoietic and lymphoid	NALM1	7.9
Haematopoietic and lymphoid	NALM6	8
Haematopoietic and lymphoid	NAMALWA	6.7
Haematopoietic and lymphoid	NB4	8.1
Haematopoietic and lymphoid	NCIH929	6.4
Haematopoietic and lymphoid	NCO2	8.1
Haematopoietic and lymphoid	NOMO1	7.6
Haematopoietic and lymphoid	NUDHL1	7.2
Haematopoietic and lymphoid	NUDUL1	8.1
Haematopoietic and lymphoid	OCIAML2	7.8
Haematopoietic and lymphoid	OCIAML3	7.7
Haematopoietic and lymphoid	OCIAML5	7.3
Haematopoietic and lymphoid	OCILY10	8.2
Haematopoietic and lymphoid	OCILY19	7.7
Haematopoietic and lymphoid	OCILY3	6.6
Haematopoietic and lymphoid	OCIM1	8
Haematopoietic and lymphoid	OPM2	7.8
Haematopoietic and lymphoid	P12ICHIKAWA	7.2
Haematopoietic and lymphoid	P31FUJ	7.1
Haematopoietic and lymphoid	P3HR1	7.4
Haematopoietic and lymphoid	PCM6	7.2
Haematopoietic and lymphoid	PEER	7.8
Haematopoietic and lymphoid	PF382	8.4
Haematopoietic and lymphoid	PFEIFFER	7.4
Haematopoietic and lymphoid	PL21	7.6
Haematopoietic and lymphoid	RAJI	7
Haematopoietic and lymphoid	RCHACV	7.4
Haematopoietic and lymphoid	REC1	7.9
Haematopoietic and lymphoid	REH	7.3
Haematopoietic and lymphoid	RI1	6.9
Haematopoietic and lymphoid	RL	7.6
Haematopoietic and lymphoid	RPMI8226	6.6
Haematopoietic and lymphoid	RPMI8402	7.4
Haematopoietic and lymphoid	RS411	7
Haematopoietic and lymphoid	SEM	6.8
Haematopoietic and lymphoid	SET2	6.8
Haematopoietic and lymphoid	SIGM5	7.8
Haematopoietic and lymphoid	SKM1	7.4
Haematopoietic and lymphoid	SKMM2	7.4
Haematopoietic and lymphoid	SR786	7.9
Haematopoietic and lymphoid	ST486	7.6
Haematopoietic and lymphoid	SUDHL10	7.1
Haematopoietic and lymphoid	SUDHL1	7.5
Haematopoietic and lymphoid	SUDHL4	7.3
Haematopoietic and lymphoid	SUDHL5	8.1
Haematopoietic and lymphoid	SUDHL6	7.9
Haematopoietic and lymphoid	SUDHL8	7.8
Haematopoietic and lymphoid	SUPB15	6.5
Haematopoietic and lymphoid	SUPHD1	7.5
Haematopoietic and lymphoid	SUPM2	8
Haematopoietic and lymphoid	SUPT11	8.1
Haematopoietic and lymphoid	SUPT1	6.8
Haematopoietic and lymphoid	TALL1	8.6
Haematopoietic and lymphoid	TF1	6.6
Haematopoietic and lymphoid	THP1	7.2
Haematopoietic and lymphoid	TO175T	6.3
Haematopoietic and lymphoid	TOLEDO	7.7
Haematopoietic and lymphoid	U266B1	5.6
Haematopoietic and lymphoid	U937	7.3
Haematopoietic and lymphoid	UT7	7.6
Haematopoietic and lymphoid	WSUDLCL2	7.9
Kidney	769P	5.6
Kidney	786O	5.9
Kidney	A498	5.8
Kidney	A704	6.8
Kidney	ACHN	6.4
Kidney	BFTC909	6.9
Kidney	CAKI1	6
Kidney	CAKI2	5.9
Kidney	CAL54	6.7
Kidney	KMRC1	6.2
Kidney	KMRC20	6.2
Kidney	KMRC2	6.2
Kidney	KMRC3	7.3
Kidney	OSRC2	6.2
Kidney	RCC10RGB	7.3
Kidney	SNU1272	5.9
Kidney	SNU349	6
Kidney	TUHR10TKB	5.6
Kidney	TUHR14TKB	6.5
Kidney	TUHR4TKB	6.1
Kidney	VMRCRCW	6
Kidney	VMRCRCZ	6.7
Large intestine	C2BBE1	6.8
Large intestine	CCK81	7.8
Large intestine	CL11	6.9
Large intestine	CL14	6.6
Large intestine	CL34	7.5
Large intestine	CL40	6
Large intestine	COLO205	6.2
Large intestine	COLO320	6.6
Large intestine	COLO678	7.3
Large intestine	CW2	6.2
Large intestine	DLD1	6.3
Large intestine	GP2D	6.6
Large intestine	HCC56	6.8
Large intestine	HCT116	5.8
Large intestine	HCT15	6.6
Large intestine	HS675T	6.5
Large intestine	HS698T	6.5
Large intestine	HT115	7.3
Large intestine	HT29	6.7
Large intestine	HT55	7.5
Large intestine	KM12	8
Large intestine	LOVO	6.7
Large intestine	LS1034	6.7
Large intestine	LS123	6.6
Large intestine	LS180	6.6
Large intestine	LS411N	7.3
Large intestine	LS513	7
Large intestine	MDST8	5.8
Large intestine	NCIH508	6.5
Large intestine	NCIH716	7.5
Large intestine	NCIH747	6.3
Large intestine	OUMS23	6.6
Large intestine	RCM1	6.9
Large intestine	RKO	6.6
Large intestine	SKCO1	8.3
Large intestine	SNU1040	6.5
Large intestine	SNU1197	6.9
Large intestine	SNU175	6.5
Large intestine	SNU283	6.5
Large intestine	SNU407	6.9
Large intestine	SNU503	6.8
Large intestine	SNU61	7.2
Large intestine	SNU81	7.4
Large intestine	SNUC1	7
Large intestine	SNUC2A	7.6
Large intestine	SNUC4	6.7
Large intestine	SNUC5	6.7
Large intestine	SW1116	6.6
Large intestine	SW1417	6.4
Large intestine	SW1463	6.4
Large intestine	SW403	6.4
Large intestine	SW480	6.2
Large intestine	SW48	7.1
Large intestine	SW620	6.7
Large intestine	SW837	7.6
Large intestine	SW948	7.2
Large intestine	T84	6.9
Liver	ALEXANDERCELLS	6
Liver	C3A	6.5
Liver	HEP3B217	7.1
Liver	HEPG2	6.7
Liver	HLE	5.6
Liver	HLF	5.9
Liver	HUH1	6.5
Liver	HUH6	6.6
Liver	HUH7	7.2
Liver	JHH1	6.4
Liver	JHH2	6.9
Liver	JHH4	6.3
Liver	JHH5	6.8
Liver	JHH6	7.1
Liver	JHH7	6
Liver	LI7	6.2
Liver	PLCPRF5	5.9
Liver	SKHEP1	7.1
Liver	SNU182	6
Liver	SNU387	6.1
Liver	SNU398	7
Liver	SNU423	6.1
Liver	SNU449	6.7
Liver	SNU475	6.6
Liver	SNU761	7.4
Liver	SNU878	5.4
Liver	SNU886	6.4
Lung	A549	6.2
Lung	ABC1	6.4
Lung	BEN	6.5
Lung	CAL12T	6.7
Lung	CALU1	6.3
Lung	CALU3	6.6
Lung	CALU6	7.2
Lung	CHAGOK1	7.4
Lung	COLO668	7
Lung	COLO699	5.8
Lung	CORL105	6.7
Lung	CORL23	6.8
Lung	CORL24	7.8
Lung	CORL279	7.2
Lung	CORL311	7.1
Lung	CORL47	6.6
Lung	CORL51	6.8
Lung	CORL88	7.3
Lung	CORL95	6.9
Lung	CPCN	6.5
Lung	DMS114	7
Lung	DMS153	6.8
Lung	DMS273	6.6
Lung	DMS454	6.6
Lung	DMS53	6.1
Lung	DMS79	8.3
Lung	DV90	7.2
Lung	EBC1	7.1
Lung	EPLC272H	6.2
Lung	HARA	6.1
Lung	HCC1171	7.8
Lung	HCC1195	6.5
Lung	HCC15	5.8
Lung	HCC2279	6.7
Lung	HCC2935	7.9
Lung	HCC33	7.7
Lung	HCC366	6.4
Lung	HCC4006	7.2
Lung	HCC44	5.5
Lung	HCC78	6.7
Lung	HCC827	6.8
Lung	HCC95	5.8
Lung	HLC1	6.3
Lung	HLFA	6.4
Lung	HS229T	6.1
Lung	HS618T	6.2
Lung	IALM	7.2
Lung	KNS62	5.4
Lung	LC1F	6.5
Lung	LC1SQSF	6.7
Lung	LCLC103H	6.3
Lung	LCLC97TM1	6.9
Lung	LK2	6.5
Lung	LOUNH91	5.5
Lung	LU65	6.7
Lung	LU99	6.3
Lung	LUDLU1	6.6
Lung	LXF289	6.8
Lung	MORCPR	6.5
Lung	NCIH1048	6.8
Lung	NCIH1092	9.3
Lung	NCIH1105	8.1
Lung	NCIH1155	6.7
Lung	NCIH1184	7.5
Lung	NCIH1299	6.3
Lung	NCIH1339	7.3
Lung	NCIH1341	6
Lung	NCIH1355	6
Lung	NCIH1373	6.5
Lung	NCIH1385	8
Lung	NCIH1395	6.2
Lung	NCIH1435	6.6
Lung	NCIH1436	7.6
Lung	NCIH1437	6.9
Lung	NCIH146	6.7
Lung	NCIH1563	6.2
Lung	NCIH1568	6.5
Lung	NCIH1573	6.7
Lung	NCIH1581	6.8
Lung	NCIH1618	6.7
Lung	NCIH1623	6.6
Lung	NCIH1648	6.9
Lung	NCIH1650	6.6
Lung	NCIH1651	6.2
Lung	NCIH1666	6.6
Lung	NCIH1693	7
Lung	NCIH1694	7.8
Lung	NCIH1703	6.5
Lung	NCIH1734	6.6
Lung	NCIH1755	6
Lung	NCIH1781	7.6
Lung	NCIH1792	6.3
Lung	NCIH1793	6.5
Lung	NCIH1836	7.7
Lung	NCIH1838	7.4
Lung	NCIH1869	6.5
Lung	NCIH1876	7.6
Lung	NCIH1915	7.3
Lung	NCIH1930	7.2
Lung	NCIH1944	5.9
Lung	NCIH1963	8
Lung	NCIH196	6.7
Lung	NCIH1975	7
Lung	NCIH2009	6.7
Lung	NCIH2023	5.9
Lung	NCIH2029	7.3
Lung	NCIH2030	6.8
Lung	NCIH2066	6.6
Lung	NCIH2081	8
Lung	NCIH2085	6.6
Lung	NCIH2087	6.5
Lung	NCIH209	7.2
Lung	NCIH2106	6.4
Lung	NCIH2110	7.3
Lung	NCIH211	6.6
Lung	NCIH2122	6.4
Lung	NCIH2126	6.9
Lung	NCIH2141	8.4
Lung	NCIH2170	6.7
Lung	NCIH2171	7.5
Lung	NCIH2172	7.8
Lung	NCIH2196	6.9
Lung	NCIH2227	7
Lung	NCIH2228	6.7
Lung	NCIH226	6
Lung	NCIH2286	7.2
Lung	NCIH2291	6.5
Lung	NCIH2342	6.8
Lung	NCIH2347	6.2
Lung	NCIH23	6.4
Lung	NCIH2405	7.1
Lung	NCIH2444	6.7
Lung	NCIH292	5.7
Lung	NCIH322	6.3
Lung	NCIH3255	7.9
Lung	NCIH358	7
Lung	NCIH441	6.9
Lung	NCIH446	6.8
Lung	NCIH460	6.5
Lung	NCIH510	5.9
Lung	NCIH520	6.8
Lung	NCIH522	6.4
Lung	NCIH524	7.3
Lung	NCIH526	6.7
Lung	NCIH596	7.2
Lung	NCIH647	6.1
Lung	NCIH650	7.6
Lung	NCIH661	6.1
Lung	NCIH69	7.7
Lung	NCIH727	6.9
Lung	NCIH810	6.5
Lung	NCIH82	6.1
Lung	NCIH838	6.8
Lung	NCIH841	7.1
Lung	NCIH854	6.7
Lung	NCIH889	6.8
Lung	PC14	5.8
Lung	RERFLCAD1	6.6
Lung	RERFLCAD2	6.1
Lung	RERFLCAI	6.2
Lung	RERFLCKJ	6.8
Lung	RERFLCMS	6
Lung	RERFLCSQ1	6.4
Lung	SBC5	6.5
Lung	SCLC21H	7.6
Lung	SHP77	7.5
Lung	SKLU1	6.1
Lung	SKMES1	6.4
Lung	SQ1	5.8
Lung	SW1271	6.8
Lung	SW1573	7
Lung	SW900	5.9
Lung	VMRCLCD	6.3
Lung	VMRCLCP	6.7
Oesophagus	COLO680N	7.2
Oesophagus	ECGI10	6.5
Oesophagus	KYSE140	6.3
Oesophagus	KYSE150	6.4
Oesophagus	KYSE180	6.3
Oesophagus	KYSE270	6.1
Oesophagus	KYSE30	6.7
Oesophagus	KYSE410	6.4
Oesophagus	KYSE450	6
Oesophagus	KYSE510	7.1
Oesophagus	KYSE520	7
Oesophagus	KYSE70	7.1
Oesophagus	OE19	6.3
Oesophagus	OE33	7.4
Oesophagus	TE10	7.4
Oesophagus	TE11	6.4
Oesophagus	TE14	7
Oesophagus	TE15	6.3
Oesophagus	TE1	6.2
Oesophagus	TE4	6.2
Oesophagus	TE5	7.4
Oesophagus	TE6	7.9
Oesophagus	TE8	7
Oesophagus	TE9	6.9
Oesophagus	TT	7.3
Ovary	59M	5.7
Ovary	A2780	7.1
Ovary	CAOV3	5.8
Ovary	CAOV4	6.4
Ovary	COLO704	6.8
Ovary	COV318	6.7
Ovary	COV362	5.9
Ovary	COV434	6.7
Ovary	COV504	6.1
Ovary	COV644	7
Ovary	EFO21	6.9
Ovary	EFO27	5.6
Ovary	ES2	5.7
Ovary	FUOV1	7.2
Ovary	HEYA8	6.1
Ovary	HS571T	6.6
Ovary	IGROV1	6.5
Ovary	JHOC5	6.6
Ovary	JHOM1	7.2
Ovary	JHOM2B	7.9
Ovary	JHOS2	7.2
Ovary	JHOS4	6.4
Ovary	KURAMOCHI	7
Ovary	MCAS	6.1
Ovary	NIHOVCAR3	5.8
Ovary	OAW28	7
Ovary	OAW42	6.6
Ovary	OC314	6.4
Ovary	OC316	6.2
Ovary	ONCODG1	6
Ovary	OV56	6.5
Ovary	OV7	6.5
Ovary	OV90	6.4
Ovary	OVCAR4	6.8
Ovary	OVCAR8	7.1
Ovary	OVISE	5.9
Ovary	OVK18	6
Ovary	OVKATE	6.3
Ovary	OVMANA	8.6
Ovary	OVSAHO	6.5
Ovary	OVTOKO	6
Ovary	RMGI	5.6
Ovary	RMUGS	5.6
Ovary	SKOV3	6.1
Ovary	SNU119	7.6
Ovary	SNU840	6.6
Ovary	SNU8	6.6
Ovary	TOV112D	6.2
Ovary	TOV21G	6.7
Ovary	TYKNU	5.9
Pancreas	ASPC1	7.2
Pancreas	BXPC3	6.1
Pancreas	CAPAN1	7.7
Pancreas	CAPAN2	7.2
Pancreas	CFPAC1	7.5
Pancreas	DANG	6.3
Pancreas	HPAC	7.9
Pancreas	HPAFII	7.4
Pancreas	HS766T	6.1
Pancreas	HUPT3	6.5
Pancreas	HUPT4	7.6
Pancreas	KCIMOH1	7.7
Pancreas	KLM1	4.8
Pancreas	KP2	6.3
Pancreas	KP3	6.4
Pancreas	KP4	7.3
Pancreas	L33	6.4
Pancreas	MIAPACA2	7.7
Pancreas	PANC0203	7
Pancreas	PANC0213	6.7
Pancreas	PANC0327	6.6
Pancreas	PANC0403	6.7
Pancreas	PANC0504	6.9
Pancreas	PANC0813	7
Pancreas	PANC1005	7.2
Pancreas	PANC1	5.6
Pancreas	PATU8902	7.2
Pancreas	PATU8988S	7.4
Pancreas	PATU8988T	6.4
Pancreas	PK1	6.1
Pancreas	PK45H	7
Pancreas	PK59	7.1
Pancreas	PL45	6.8
Pancreas	PSN1	6.7
Pancreas	QGP1	6.9
Pancreas	SNU213	7.5
Pancreas	SNU324	6.8
Pancreas	SNU410	6.9
Pancreas	SU8686	6.8
Pancreas	SUIT2	6.5
Pancreas	SW1990	7.2
Pancreas	T3M4	5.7
Pancreas	TCCPAN2	7.5
Pancreas	YAPC	7.7
Pleura	ACCMESO1	6
Pleura	DM3	5.8
Pleura	ISTMES1	6.6
Pleura	ISTMES2	6.6
Pleura	JL1	6
Pleura	MPP89	6.6
Pleura	MSTO211H	6.4
Pleura	NCIH2052	6.3
Pleura	NCIH2452	6.4
Pleura	NCIH28	5.7
Prostate	22RV1	6.6
Prostate	DU145	6.8
Prostate	LNCAPCLONEFGC	6.3
Prostate	MDAPCA2B	6.6
Prostate	NCIH660	7.4
Prostate	PC3	6.5
Prostate	VCAP	6.3
Salivary gland	A253	8.2
Salivary gland	YD15	6.5
Skin	A101D	5.7
Skin	A2058	6.2
Skin	A375	5.7
Skin	C32	6.6
Skin	CHL1	6.1
Skin	CJM	7.1
Skin	COLO679	5.8
Skin	COLO741	5.6
Skin	COLO783	6.5
Skin	COLO792	5.1
Skin	COLO800	6.1
Skin	COLO818	5.7
Skin	COLO829	6.2
Skin	COLO849	6.8
Skin	G361	5.5
Skin	GRM	6
Skin	HMCB	6
Skin	HS294T	6.1
Skin	HS600T	6.3
Skin	HS688AT	6.6
Skin	HS695T	5.6
Skin	HS839T	6.2
Skin	HS852T	6.7
Skin	HS895T	6.1
Skin	HS934T	6.3
Skin	HS936T	6.4
Skin	HS939T	6.1
Skin	HS940T	6.1
Skin	HS944T	5.5
Skin	HT144	6.3
Skin	IGR1	6.8
Skin	IGR37	4.8
Skin	IGR39	6.1
Skin	IPC298	6.1
Skin	K029AX	5.6
Skin	LOXIMVI	6.7
Skin	MALME3M	6.1
Skin	MDAMB435S	7.4
Skin	MELHO	6.1
Skin	MELJUSO	5.8
Skin	MEWO	6.9
Skin	RPMI7951	6.8
Skin	RVH421	6
Skin	SH4	6.5
Skin	SKMEL1	6
Skin	SKMEL24	6.1
Skin	SKMEL28	6.2
Skin	SKMEL2	6.1
Skin	SKMEL30	6.3
Skin	SKMEL31	6.3
Skin	SKMEL3	6.4
Skin	SKMEL5	6.1
Skin	UACC257	5.6
Skin	UACC62	6.6
Skin	WM115	6.3
Skin	WM1799	7
Skin	WM2664	6.5
Skin	WM793	5.9
Skin	WM88	6.6
Skin	WM983B	6.5
Small intestine	HUTU80	6.2
Soft tissue	A204	7.2
Soft tissue	G401	7
Soft tissue	G402	6.5
Soft tissue	GCT	6.7
Soft tissue	HS729	6.1
Soft tissue	HT1080	5.4
Soft tissue	KYM1	7.3
Soft tissue	MESSA	7
Soft tissue	RD	6.2
Soft tissue	RH30	6.2
Soft tissue	RH41	6.5
Soft tissue	RKN	6.7
Soft tissue	S117	6.4
Soft tissue	SJRH30	6.6
Soft tissue	SKLMS1	7
Soft tissue	SKUT1	6.6
Soft tissue	TE125T	6.7
Soft tissue	TE159T	6.5
Soft tissue	TE441T	7.6
Soft tissue	TE617T	6.4
Stomach	2313287	6.8
Stomach	AGS	6.8
Stomach	AZ521	6.5
Stomach	ECC10	8.4
Stomach	ECC12	7
Stomach	FU97	6.6
Stomach	GCIY	5.7
Stomach	GSS	7.1
Stomach	GSU	7.7
Stomach	HGC27	7.1
Stomach	HS746T	6.6
Stomach	HUG1N	6.1
Stomach	IM95	6.6
Stomach	KATOIII	6.1
Stomach	KE39	7.1
Stomach	LMSU	6.4
Stomach	MKN1	6
Stomach	MKN45	7
Stomach	MKN74	7.7
Stomach	MKN7	7.4
Stomach	NCCSTCK140	6.9
Stomach	NCIN87	7.2
Stomach	NUGC2	5.7
Stomach	NUGC3	6.2
Stomach	NUGC4	7
Stomach	OCUM1	7.4
Stomach	RERFGC1B	7
Stomach	SH10TC	6.5
Stomach	SNU16	7.1
Stomach	SNU1	6.7
Stomach	SNU216	7.4
Stomach	SNU520	7.6
Stomach	SNU5	6.3
Stomach	SNU601	6.7
Stomach	SNU620	7.4
Stomach	SNU668	7.5
Stomach	SNU719	7.7
Stomach	TGBC11TKB	7.4
Thyroid	8305C	6.2
Thyroid	8505C	6.5
Thyroid	BCPAP	6.2
Thyroid	BHT101	6.8
Thyroid	CAL62	7.5
Thyroid	CGTHW1	6.6
Thyroid	FTC133	6.7
Thyroid	FTC238	6.3
Thyroid	ML1	6.6
Thyroid	SW579	5.8
Thyroid	TT2609C02	6.5
Thyroid	TT	7.5
Upper aerodigestive tract	BHY	7.3
Upper aerodigestive tract	BICR16	5.5
Upper aerodigestive tract	BICR18	7.1
Upper aerodigestive tract	BICR22	6.4
Upper aerodigestive tract	BICR31	7.1
Upper aerodigestive tract	BICR56	6.4
Upper aerodigestive tract	BICR6	6.8
Upper aerodigestive tract	CAL27	6.7
Upper aerodigestive tract	CAL33	6.4
Upper aerodigestive tract	DETROIT562	6.6
Upper aerodigestive tract	FADU	7
Upper aerodigestive tract	HS840T	6.1
Upper aerodigestive tract	HSC2	5.8
Upper aerodigestive tract	HSC3	6.3
Upper aerodigestive tract	HSC4	8.2
Upper aerodigestive tract	PECAPJ15	7.4
Upper aerodigestive tract	PECAPJ34CLONEC12	7
Upper aerodigestive tract	PECAPJ41CLONED2	6.9
Upper aerodigestive tract	PECAPJ49	5.6
Upper aerodigestive tract	SCC15	6.5
Upper aerodigestive tract	SCC25	6.2
Upper aerodigestive tract	SCC4	7.5
Upper aerodigestive tract	SCC9	7.7
Upper aerodigestive tract	SNU1076	7.2
Upper aerodigestive tract	SNU1214	6.7
Upper aerodigestive tract	SNU46	6.4
Upper aerodigestive tract	SNU899	6.7
Upper aerodigestive tract	YD10B	6.7
Upper aerodigestive tract	YD38	6.3
Upper aerodigestive tract	YD8	6.6
Urinary tract	5637	5.6
Urinary tract	639V	6.6
Urinary tract	647V	6.2
Urinary tract	BC3C	6.3
Urinary tract	BFTC905	7.6
Urinary tract	CAL29	6.8
Urinary tract	HS172T	7.3
Urinary tract	HT1197	6.3
Urinary tract	HT1376	5.8
Urinary tract	J82	5.7
Urinary tract	JMSU1	6.3
Urinary tract	KMBC2	7.1
Urinary tract	KU1919	6.3
Urinary tract	RT11284	6.9
Urinary tract	RT112	6.3
Urinary tract	RT4	6.7
Urinary tract	SCABER	6.5
Urinary tract	SW1710	6.6
Urinary tract	SW780	7.5
Urinary tract	T24	6.9
Urinary tract	TCCSUP	6.2
Urinary tract	UMUC1	5.6
Urinary tract	UMUC3	6.4
Urinary tract	VMCUB1	7

> The Human Protein Atlas (HPA)

[ TOP ]

Tissue	Expression Level (TPM)
Adipose tissue	10.6
Adrenal gland	9.1
Appendix	15.4
Bone marrow	22
Breast	11.2
Cerebral cortex	24.1
Cervix, uterine	13.1
Colon	7.9
Duodenum	9.1
Endometrium	15.6
Epididymis	8.2
Esophagus	8.2
Fallopian tube	9.1
Gallbladder	14.2
Heart muscle	6
Kidney	10.1
Liver	9.8
Lung	15.5
Lymph node	17.6
Ovary	15.3
Pancreas	1.5
Parathyroid gland	22.4
Placenta	14
Prostate	13.2
Rectum	9.9
Salivary gland	2.9
Seminal vesicle	10.6
Skeletal muscle	1.7
Skin	10.2
Small intestine	10.3
Smooth muscle	12.1
Spleen	19.6
Stomach	8.4
Testis	13
Thyroid gland	17.7
Tonsil	10.8
Urinary bladder	11.4

> Text Mining based Expression

[ TOP ]

PMID	Expression	Cancer	Evidence
20441585	Underexpression	Epithelial Neoplasm	Nine genes were selected and the expression results of 6 down-regulated genes (ARID4A, CALR, GNB2L1, RNF10, SQSTM1, USP9X) were validated by real time PCR.

Summary
Symbol	ARID4A
Name	AT-rich interaction domain 4A
Aliases	RBP-1; RBBP1; retinoblastoma-binding protein 1; RBBP-1; ARID domain-containing protein 4A; retinoblastoma bi ......
Location	14q23.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Somatic copy number alteration in primary tomur tissue

> The Cancer Genome Atlas (TCGA)

[ TOP ]

Correlation between expression and SCNA as well as percentage of patients in different status.

Cancer	Full Name	# Sample	R	P	% Loss	% Neutral	% Gain	Status
BLCA	Bladder urothelial carcinoma	404	0.367	2.65e-14	31.9	52	16.1	Neutral
BRCA	Breast invasive carcinoma	1075	0.447	4.75e-54	27.9	57.4	14.7	Neutral
CESC	Cervical and endocervical cancers	292	0.382	1.47e-11	12.7	70.2	17.1	Neutral
COAD	Colon adenocarcinoma	449	0.336	2.5e-13	31.6	60.4	8	Neutral
ESCA	Esophageal carcinoma	183	0.369	2.67e-07	25.7	45.4	29	Neutral
GBM	Glioblastoma multiforme	147	0.562	1.33e-13	34.7	59.9	5.4	Loss
HNSC	Head and Neck squamous cell carcinoma	514	0.355	9.53e-17	10.9	58.8	30.4	Neutral
KIRC	Kidney renal clear cell carcinoma	525	0.404	4.45e-22	42.1	54.9	3	Loss
KIRP	Kidney renal papillary cell carcinoma	288	0.192	0.00105	17	82.3	0.7	Neutral
LAML	Acute Myeloid Leukemia	166	-0.051	0.513	0	98.8	1.2	Neutral
LGG	Brain Lower Grade Glioma	513	0.452	3.07e-27	19.9	79.3	0.8	Neutral
LIHC	Liver hepatocellular carcinoma	364	0.382	4.54e-14	31	61.5	7.4	Neutral
LUAD	Lung adenocarcinoma	512	0.446	1.87e-26	24	46.9	29.1	Neutral
LUSC	Lung squamous cell carcinoma	498	0.506	9.64e-34	36.3	38	25.7	Loss
OV	Ovarian serous cystadenocarcinoma	300	0.5	2.37e-20	49.7	40.7	9.7	Loss
PAAD	Pancreatic adenocarcinoma	177	0.266	0.000353	9	74.6	16.4	Neutral
PCPG	Pheochromocytoma and Paraganglioma	162	0.317	4.07e-05	13	84	3.1	Neutral
PRAD	Prostate adenocarcinoma	491	0.032	0.474	6.3	91	2.6	Neutral
READ	Rectum adenocarcinoma	164	0.32	2.95e-05	39.6	53	7.3	Loss
SARC	Sarcoma	255	0.391	1.02e-10	29	49	22	Neutral
SKCM	Skin Cutaneous Melanoma	367	0.138	0.00817	31.3	56.9	11.7	Neutral
STAD	Stomach adenocarcinoma	413	0.27	2.6e-08	27.8	63.4	8.7	Neutral
TGCT	Testicular Germ Cell Tumors	150	0.412	1.65e-07	14	52	34	Gain
THCA	Thyroid carcinoma	497	0.039	0.388	0.2	97.6	2.2	Neutral
THYM	Thymoma	119	0.176	0.055	2.5	86.6	10.9	Neutral
UCEC	Uterine Corpus Endometrial Carcinoma	537	0.304	5.55e-13	12.7	80.4	6.9	Neutral

Summary
Symbol	ARID4A
Name	AT-rich interaction domain 4A
Aliases	RBP-1; RBBP1; retinoblastoma-binding protein 1; RBBP-1; ARID domain-containing protein 4A; retinoblastoma bi ......
Location	14q23.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Methylation level in the promoter region of CR

> Methylation level in the promoter region of CR

[ TOP ]

Correlation between expression and methylation as well as differential methylation analysis.

Cancer	Full Name	R	P	# N	# T	Delta beta (T vs N)	P value (T vs N)	Status
BLCA	Bladder urothelial carcinoma	-0.341	7.19e-13	17	408	0.006	0.00286	NS/NA
BRCA	Breast invasive carcinoma	-0.292	2.16e-18	83	785	-0.001	0.53	NS/NA
CESC	Cervical and endocervical cancers	-0.217	0.000121	3	306	NA	NA	NS/NA
COAD	Colon adenocarcinoma	-0.287	2.31e-07	19	297	0.008	1.13e-05	NS/NA
ESCA	Esophageal carcinoma	-0.279	8.54e-05	9	185	NA	NA	NS/NA
GBM	Glioblastoma multiforme	-0.337	0.00625	1	64	NA	NA	NS/NA
HNSC	Head and Neck squamous cell carcinoma	-0.266	3.67e-10	20	522	0.003	0.00179	NS/NA
KIRC	Kidney renal clear cell carcinoma	-0.278	1.88e-07	24	319	0.009	1.12e-09	NS/NA
KIRP	Kidney renal papillary cell carcinoma	-0.322	1.54e-08	23	275	0.008	7.54e-09	NS/NA
LAML	Acute Myeloid Leukemia	-0.114	0.137	0	170	NA	NA	NS/NA
LGG	Brain Lower Grade Glioma	-0.342	6.62e-16	0	530	NA	NA	NS/NA
LIHC	Liver hepatocellular carcinoma	-0.314	7.52e-11	41	373	0.029	1.32e-45	NS/NA
LUAD	Lung adenocarcinoma	-0.16	0.000436	21	456	0	0.408	NS/NA
LUSC	Lung squamous cell carcinoma	-0.259	3.78e-07	8	370	NA	NA	NS/NA
OV	Ovarian serous cystadenocarcinoma	-0.85	0.00607	0	9	NA	NA	NS/NA
PAAD	Pancreatic adenocarcinoma	-0.479	5.61e-12	4	179	NA	NA	NS/NA
PCPG	Pheochromocytoma and Paraganglioma	-0.164	0.0251	3	184	NA	NA	NS/NA
PRAD	Prostate adenocarcinoma	-0.384	0	35	498	0.007	0.00277	NS/NA
READ	Rectum adenocarcinoma	-0.547	5.47e-09	2	99	NA	NA	NS/NA
SARC	Sarcoma	-0.378	3.16e-10	0	263	NA	NA	NS/NA
SKCM	Skin Cutaneous Melanoma	-0.278	9.29e-10	1	471	NA	NA	NS/NA
STAD	Stomach adenocarcinoma	-0.404	0	0	372	NA	NA	NS/NA
TGCT	Testicular Germ Cell Tumors	-0.254	0.00141	0	156	NA	NA	NS/NA
THCA	Thyroid carcinoma	-0.105	0.0127	50	509	0.001	0.379	NS/NA
THYM	Thymoma	-0.184	0.0422	2	120	NA	NA	NS/NA
UCEC	Uterine Corpus Endometrial Carcinoma	-0.229	6.1e-07	34	431	-0.008	0.37	NS/NA

Summary
Symbol	ARID4A
Name	AT-rich interaction domain 4A
Aliases	RBP-1; RBBP1; retinoblastoma-binding protein 1; RBBP-1; ARID domain-containing protein 4A; retinoblastoma bi ......
Location	14q23.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Primary tumor tissue from TCGA > Normal tumor tissue from HPA

>The Cancer Genome Atlas (TCGA) [ TOP ]
There is no record.

> The Human Protein Atlas (HPA) [ TOP ]
There is no antibody staining data.

Summary
Symbol	ARID4A
Name	AT-rich interaction domain 4A
Aliases	RBP-1; RBBP1; retinoblastoma-binding protein 1; RBBP-1; ARID domain-containing protein 4A; retinoblastoma bi ......
Location	14q23.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Association between expresson and subtype > Overall survival analysis based on expression > Association between expresson and stage > Association between expresson and grade

> Subtype

[ TOP ]

Association between expresson and subtype.

Cancer	Full Name	# Patients	P Value (Kruskal-Wallis)	Association	Source
BLCA	Bladder urothelial carcinoma	128	0.131	NS	24476821
BRCA	Breast invasive carcinoma	521	6.95e-16	Significant	23000897
COAD	Colon adenocarcinoma	149	0.0588	NS	22810696
GBM	Glioblastoma multiforme	157	0.00723	Significant	26824661
HNSC	Head and Neck squamous cell carcinoma	279	0.00259	Significant	25631445
KIRP	Kidney renal papillary cell carcinoma	161	0.572	NS	26536169
LGG	Brain Lower Grade Glioma	513	3.78e-20	Significant	26824661
LUAD	Lung adenocarcinoma	230	0.00234	Significant	25079552
LUSC	Lung squamous cell carcinoma	178	0.00822	Significant	22960745
OV	Ovarian serous cystadenocarcinoma	287	0.11	NS	21720365
PRAD	Prostate adenocarcinoma	333	7.22e-05	Significant	26544944
READ	Rectum adenocarcinoma	67	0.5	NS	22810696
SKCM	Skin Cutaneous Melanoma	315	0.665	NS	26091043
STAD	Stomach adenocarcinoma	277	0.0298	Significant	25079317
THCA	Thyroid carcinoma	391	1.05e-06	Significant	25417114
UCEC	Uterine Corpus Endometrial Carcinoma	232	0.737	NS	23636398

> Overall survival

[ TOP ]

Overall survival analysis based on expression.

Cancer	Full Name	# Patients	Hazard Ratio	P Value (Log Rank Test)	Association
BLCA	Bladder urothelial carcinoma	405	0.817	0.372	NS
BRCA	Breast invasive carcinoma	1079	0.976	0.918	NS
CESC	Cervical and endocervical cancers	291	0.956	0.909	NS
COAD	Colon adenocarcinoma	439	0.947	0.849	NS
ESCA	Esophageal carcinoma	184	1.301	0.421	NS
GBM	Glioblastoma multiforme	158	0.778	0.336	NS
HNSC	Head and Neck squamous cell carcinoma	518	0.568	0.00344	Longer
KIRC	Kidney renal clear cell carcinoma	531	0.393	2.2e-05	Longer
KIRP	Kidney renal papillary cell carcinoma	287	1.374	0.453	NS
LAML	Acute Myeloid Leukemia	149	0.616	0.0792	NS
LGG	Brain Lower Grade Glioma	511	0.347	4.07e-05	Longer
LIHC	Liver hepatocellular carcinoma	365	0.54	0.0128	Longer
LUAD	Lung adenocarcinoma	502	0.585	0.012	Longer
LUSC	Lung squamous cell carcinoma	494	0.754	0.143	NS
OV	Ovarian serous cystadenocarcinoma	303	1.308	0.209	NS
PAAD	Pancreatic adenocarcinoma	177	1.002	0.995	NS
PCPG	Pheochromocytoma and Paraganglioma	179	5.244	0.101	NS
PRAD	Prostate adenocarcinoma	497	3.66	0.257	NS
READ	Rectum adenocarcinoma	159	1.487	0.636	NS
SARC	Sarcoma	259	1.022	0.94	NS
SKCM	Skin Cutaneous Melanoma	459	0.579	0.00578	Longer
STAD	Stomach adenocarcinoma	388	1.154	0.52	NS
TGCT	Testicular Germ Cell Tumors	134	700400569.529	0.28	NS
THCA	Thyroid carcinoma	500	0	0.317	NS
THYM	Thymoma	119	0.487	0.4	NS
UCEC	Uterine Corpus Endometrial Carcinoma	543	1.346	0.34	NS

> Stage

[ TOP ]

Association between expresson and stage.

Cancer	Full Name	# Patients	R Value (Spearman)	P Value (Spearman)	Association
BLCA	Bladder urothelial carcinoma	406	-0.119	0.0166	Lower
BRCA	Breast invasive carcinoma	1071	0.003	0.931	NS
CESC	Cervical and endocervical cancers	167	-0.03	0.703	NS
COAD	Colon adenocarcinoma	445	0.015	0.756	NS
ESCA	Esophageal carcinoma	162	0.011	0.893	NS
HNSC	Head and Neck squamous cell carcinoma	448	-0.001	0.986	NS
KIRC	Kidney renal clear cell carcinoma	531	-0.186	1.59e-05	Lower
KIRP	Kidney renal papillary cell carcinoma	260	-0.044	0.476	NS
LIHC	Liver hepatocellular carcinoma	347	-0.045	0.4	NS
LUAD	Lung adenocarcinoma	507	-0.163	0.000237	Lower
LUSC	Lung squamous cell carcinoma	497	0.053	0.24	NS
OV	Ovarian serous cystadenocarcinoma	302	0.018	0.758	NS
PAAD	Pancreatic adenocarcinoma	176	0.07	0.353	NS
READ	Rectum adenocarcinoma	156	0.101	0.212	NS
SKCM	Skin Cutaneous Melanoma	410	-0.037	0.458	NS
STAD	Stomach adenocarcinoma	392	0.094	0.0621	NS
TGCT	Testicular Germ Cell Tumors	81	-0.359	0.000988	Lower
THCA	Thyroid carcinoma	499	-0.036	0.429	NS
UCEC	Uterine Corpus Endometrial Carcinoma	501	0.045	0.315	NS

> Grade

[ TOP ]

Association between expresson and grade.

Cancer	Full Name	# Patients	R Value (Spearman)	P Value (Spearman)	Association
CESC	Cervical and endocervical cancers	272	-0.074	0.221	NS
HNSC	Head and Neck squamous cell carcinoma	498	0.041	0.357	NS
KIRC	Kidney renal clear cell carcinoma	525	-0.294	6.18e-12	Lower
LGG	Brain Lower Grade Glioma	514	-0.135	0.00214	Lower
LIHC	Liver hepatocellular carcinoma	366	-0.136	0.00937	Lower
OV	Ovarian serous cystadenocarcinoma	296	-0.023	0.698	NS
PAAD	Pancreatic adenocarcinoma	176	0.048	0.524	NS
STAD	Stomach adenocarcinoma	406	0.069	0.163	NS
UCEC	Uterine Corpus Endometrial Carcinoma	534	0.087	0.0443	Higher

Summary
Symbol	ARID4A
Name	AT-rich interaction domain 4A
Aliases	RBP-1; RBBP1; retinoblastoma-binding protein 1; RBBP-1; ARID domain-containing protein 4A; retinoblastoma bi ......
Location	14q23.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Targets inferred by reverse engineering method > Targets identified by ChIP-seq data

> Targets inferred by reverse engineering method [ TOP ]

> Targets identified by ChIP-seq data [ TOP ]

Summary
Symbol	ARID4A
Name	AT-rich interaction domain 4A
Aliases	RBP-1; RBBP1; retinoblastoma-binding protein 1; RBBP-1; ARID domain-containing protein 4A; retinoblastoma bi ......
Location	14q23.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Drugs from DrugBank database

> Drugs from DrugBank database [ TOP ]
There is no record for ARID4A.

Summary
Symbol	ARID4A
Name	AT-rich interaction domain 4A
Aliases	RBP-1; RBBP1; retinoblastoma-binding protein 1; RBBP-1; ARID domain-containing protein 4A; retinoblastoma bi ......
Location	14q23.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Protein-Protein Interaction Network > miRNA Regulatory Relationship > Interactions from Text Mining

> Protein-Protein Interaction Network [ TOP ]

> miRNA Regulatory Relationship [ TOP ]

> Interactions from Text Mining [ TOP ]
There is no record for ARID4A.