CR2Cancer

Summary
Symbol	SMARCC2
Name	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
Aliases	BAF170; CRACC2; BRG1-associated factor 170; SWI/SNF complex 170 kDa subunit; SWI/SNF-related matrix-associat ......
Location	12q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Domain, Function and Classification > Gene Ontology > KEGG and Reactome Pathway

> Domain, Function and Classification

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Domain

PF00249 Myb-like DNA-binding domain
PF04433 SWIRM domain
PF16495 SWIRM-associated region 1
PF16496 SWIRM-associated domain at the N-terminal
PF16498 SWIRM-associated domain at the C-terminal

Function

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Can stimulate the ATPase activity of the catalytic subunit of these complexes. May be required for CoREST dependent repression of neuronal specific gene promoters in non-neuronal cells. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity).

Classification

Class	Modification	Substrate	Product	PubMed
Chromatin remodelling cofactor	#	#	#	10078207

> Gene Ontology [ TOP ]
Biological Process	GO:0006333 chromatin assembly or disassembly GO:0006337 nucleosome disassembly GO:0006338 chromatin remodeling GO:0021872 forebrain generation of neurons GO:0021877 forebrain neuron fate commitment GO:0021879 forebrain neuron differentiation GO:0021882 regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment GO:0021898 commitment of multipotent stem cells to neuronal lineage in forebrain GO:0021953 central nervous system neuron differentiation GO:0030900 forebrain development GO:0031498 chromatin disassembly GO:0032984 macromolecular complex disassembly GO:0032986 protein-DNA complex disassembly GO:0034728 nucleosome organization GO:0043044 ATP-dependent chromatin remodeling GO:0043241 protein complex disassembly GO:0045165 cell fate commitment GO:0048663 neuron fate commitment GO:0060850 regulation of transcription involved in cell fate commitment GO:0071824 protein-DNA complex subunit organization
Molecular Function	GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding GO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding GO:0000987 core promoter proximal region sequence-specific DNA binding GO:0001158 enhancer sequence-specific DNA binding GO:0001159 core promoter proximal region DNA binding GO:0003682 chromatin binding GO:0003713 transcription coactivator activity GO:0031490 chromatin DNA binding GO:0031491 nucleosome binding GO:0031492 nucleosomal DNA binding GO:0035326 enhancer binding GO:0043566 structure-specific DNA binding
Cellular Component	GO:0000785 chromatin GO:0000790 nuclear chromatin GO:0016514 SWI/SNF complex GO:0017053 transcriptional repressor complex GO:0044454 nuclear chromosome part GO:0070603 SWI/SNF superfamily-type complex GO:0071564 npBAF complex GO:0071565 nBAF complex GO:0090544 BAF-type complex

> KEGG and Reactome Pathway [ TOP ]
KEGG	-
Reactome	R-HSA-3247509: Chromatin modifying enzymes R-HSA-4839726: Chromatin organization R-HSA-3214858: RMTs methylate histone arginines

Summary
Symbol	SMARCC2
Name	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
Aliases	BAF170; CRACC2; BRG1-associated factor 170; SWI/SNF complex 170 kDa subunit; SWI/SNF-related matrix-associat ......
Location	12q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Mutation landscape in primary tumor tissue from TCGA > Mutation landscape in cancer cell line from CCLE > All mutations from COSMIC database V81 > Variations from text mining

> The Cancer Genome Atlas (TCGA) [ TOP ]

> Cancer Cell Line Encyclopedia (CCLE) [ TOP ]
There is no record.

> Catalogue of Somatic Mutations in Cancer (COSMIC)

[ TOP ]

COSMIC ID	CDS change	AA change	Mutation Type	Anatomical Site
COSM941547	c.2883A>G	p.P961P	Substitution - coding silent	Endometrium
COSM4850049	c.2908C>T	p.Q970*	Substitution - Nonsense	Cervix
COSM3723646	c.986G>A	p.R329H	Substitution - Missense	Upper_aerodigestive_tract
COSM1363039	c.3128delC	p.P1043fs*18	Deletion - Frameshift	Large_intestine
COSM5423257	c.230C>T	p.P77L	Substitution - Missense	Biliary_tract
COSM941569	c.166T>G	p.L56V	Substitution - Missense	Endometrium
COSM1363037	c.3274_3276delCCT	p.P1092delP	Deletion - In frame	Large_intestine
COSM4422654	c.562+6A>T	p.?	Unknown	Kidney
COSM3731429	c.3128_3129insC	p.G1044fs*33	Insertion - Frameshift	Large_intestine
COSM4043547	c.265T>C	p.S89P	Substitution - Missense	Stomach
COSM5361283	c.3568+1delG	p.?	Unknown	Large_intestine
COSM3463399	c.741C>T	p.T247T	Substitution - coding silent	Skin
COSM6000581	c.3030T>C	p.S1010S	Substitution - coding silent	Prostate
COSM1288091	c.3043C>A	p.Q1015K	Substitution - Missense	Autonomic_ganglia
COSM941553	c.2596C>T	p.L866L	Substitution - coding silent	Endometrium
COSM3772689	c.2608G>A	p.A870T	Substitution - Missense	Pancreas
COSM5478316	c.1400A>C	p.N467T	Substitution - Missense	Large_intestine
COSM4489000	c.3419C>T	p.A1140V	Substitution - Missense	Skin
COSM4830875	c.881G>T	p.G294V	Substitution - Missense	Cervix
COSM4043520	c.2508G>T	p.K836N	Substitution - Missense	Stomach
COSM941537	c.3498C>T	p.A1166A	Substitution - coding silent	Endometrium
COSM1744417	c.1995C>G	p.P665P	Substitution - coding silent	Biliary_tract
COSM941561	c.1319C>A	p.A440D	Substitution - Missense	Endometrium
COSM941555	c.2586T>C	p.A862A	Substitution - coding silent	Endometrium
COSM1363039	c.3128delC	p.P1043fs*18	Deletion - Frameshift	Large_intestine
COSM289850	c.595A>T	p.K199*	Substitution - Nonsense	Large_intestine
COSM21887	c.2703C>G	p.I901M	Substitution - Missense	Lung
COSM3416996	c.2671C>A	p.L891M	Substitution - Missense	Large_intestine
COSM4567034	c.543_544CC>TT	p.P182S	Substitution - Missense	Skin
COSM1606379	c.1984C>T	p.Q662*	Substitution - Nonsense	Liver
COSM4728347	c.1106C>T	p.S369L	Substitution - Missense	Large_intestine
COSM941557	c.1861A>C	p.N621H	Substitution - Missense	Endometrium
COSM1476745	c.253A>G	p.K85E	Substitution - Missense	Breast
COSM4793909	c.569G>A	p.W190*	Substitution - Nonsense	Liver
COSM1363055	c.1840G>T	p.E614*	Substitution - Nonsense	Thyroid
COSM4043529	c.1796G>A	p.R599H	Substitution - Missense	Stomach
COSM4411743	c.3284C>T	p.S1095F	Substitution - Missense	Oesophagus
COSM1363039	c.3128delC	p.P1043fs*18	Deletion - Frameshift	Stomach
COSM4877367	c.643T>C	p.W215R	Substitution - Missense	Prostate
COSM1363051	c.2211C>A	p.S737R	Substitution - Missense	Large_intestine
COSM3936054	c.415C>T	p.R139*	Substitution - Nonsense	Oesophagus
COSM1363039	c.3128delC	p.P1043fs*18	Deletion - Frameshift	Large_intestine
COSM273278	c.1890C>T	p.R630R	Substitution - coding silent	Large_intestine
COSM4801850	c.2518G>A	p.E840K	Substitution - Missense	Liver
COSM1935808	c.1205A>G	p.N402S	Substitution - Missense	Large_intestine
COSM4850132	c.3010C>G	p.P1004A	Substitution - Missense	Cervix
COSM4147292	c.3577A>C	p.T1193P	Substitution - Missense	Prostate
COSM388130	c.1563C>G	p.T521T	Substitution - coding silent	Lung
COSM4187158	c.2186C>T	p.A729V	Substitution - Missense	Kidney
COSM5694618	c.1431C>T	p.P477P	Substitution - coding silent	Soft_tissue
COSM4728338	c.2339delG	p.G780fs*3	Deletion - Frameshift	Large_intestine
COSM5423257	c.230C>T	p.P77L	Substitution - Missense	Prostate
COSM3812553	c.2546T>G	p.V849G	Substitution - Missense	Breast
COSM3731429	c.3128_3129insC	p.G1044fs*33	Insertion - Frameshift	Large_intestine
COSM694487	c.215C>T	p.P72L	Substitution - Missense	Lung
COSM21887	c.2703C>G	p.I901M	Substitution - Missense	Lung
COSM5916292	c.2066C>T	p.A689V	Substitution - Missense	Skin
COSM3936051	c.2920C>G	p.P974A	Substitution - Missense	Oesophagus
COSM5485623	c.914C>A	p.P305H	Substitution - Missense	Large_intestine
COSM1363037	c.3274_3276delCCT	p.P1092delP	Deletion - In frame	Large_intestine
COSM941539	c.3297T>C	p.F1099F	Substitution - coding silent	Endometrium
COSM4512740	c.913C>T	p.P305S	Substitution - Missense	Skin
COSM1628718	c.571G>T	p.V191L	Substitution - Missense	Liver
COSM3931694	c.3435T>C	p.P1145P	Substitution - coding silent	Urinary_tract
COSM941551	c.2751A>G	p.R917R	Substitution - coding silent	Endometrium
COSM5079685	c.302A>G	p.K101R	Substitution - Missense	Large_intestine
COSM4386850	c.510T>A	p.D170E	Substitution - Missense	Lung
COSM1363049	c.2373C>T	p.S791S	Substitution - coding silent	Large_intestine
COSM1717688	c.3401A>C	p.N1134T	Substitution - Missense	Urinary_tract
COSM4793909	c.569G>A	p.W190*	Substitution - Nonsense	Liver
COSM5071907	c.3128_3129insCC	p.G1044fs*18	Insertion - Frameshift	Large_intestine
COSM3731429	c.3128_3129insC	p.G1044fs*33	Insertion - Frameshift	Stomach
COSM4755866	c.146T>C	p.L49P	Substitution - Missense	Stomach
COSM1935794	c.1453G>A	p.A485T	Substitution - Missense	Stomach
COSM5516620	c.1577C>T	p.P526L	Substitution - Missense	Biliary_tract
COSM3463372	c.2704A>G	p.K902E	Substitution - Missense	Skin
COSM13925	c.2736C>T	p.I912I	Substitution - coding silent	Lung
COSM3724768	c.1810C>T	p.Q604*	Substitution - Nonsense	Lung
COSM3731429	c.3128_3129insC	p.G1044fs*33	Insertion - Frameshift	Large_intestine
COSM1747147	c.1142-1G>C	p.?	Unknown	Urinary_tract
COSM1363035	c.3342T>C	p.P1114P	Substitution - coding silent	Large_intestine
COSM4787837	c.3602C>T	p.A1201V	Substitution - Missense	Liver
COSM4728329	c.2902G>T	p.G968C	Substitution - Missense	Large_intestine
COSM3812562	c.1606G>A	p.D536N	Substitution - Missense	Breast
COSM4472547	c.178C>T	p.Q60*	Substitution - Nonsense	Skin
COSM5072184	c.730G>A	p.D244N	Substitution - Missense	Large_intestine
COSM4043526	c.1900G>A	p.E634K	Substitution - Missense	Stomach
COSM4829438	c.3220G>A	p.A1074T	Substitution - Missense	Cervix
COSM4647639	c.3216C>T	p.G1072G	Substitution - coding silent	Large_intestine
COSM1705804	c.1279C>T	p.P427S	Substitution - Missense	Skin
COSM1606379	c.1984C>T	p.Q662*	Substitution - Nonsense	Liver
COSM1935765	c.2364G>T	p.E788D	Substitution - Missense	Pancreas
COSM941563	c.1210G>A	p.G404R	Substitution - Missense	Endometrium
COSM4147292	c.3577A>C	p.T1193P	Substitution - Missense	Thyroid
COSM4147292	c.3577A>C	p.T1193P	Substitution - Missense	Prostate
COSM1628720	c.231G>C	p.P77P	Substitution - coding silent	Liver
COSM4209410	c.3129T>C	p.P1043P	Substitution - coding silent	Haematopoietic_and_lymphoid_tissue
COSM40629	c.3063G>A	p.G1021G	Substitution - coding silent	Central_nervous_system
COSM3812556	c.2333G>T	p.G778V	Substitution - Missense	Breast
COSM1363039	c.3128delC	p.P1043fs*18	Deletion - Frameshift	Breast
COSM5980317	c.2674G>A	p.V892M	Substitution - Missense	Upper_aerodigestive_tract
COSM126320	c.2098T>C	p.F700L	Substitution - Missense	Upper_aerodigestive_tract
COSM4836547	c.3271C>A	p.P1091T	Substitution - Missense	Cervix
COSM941541	c.3222G>A	p.A1074A	Substitution - coding silent	Endometrium
COSM4043553	c.101A>G	p.N34S	Substitution - Missense	Stomach
COSM5811928	c.3374T>A	p.F1125Y	Substitution - Missense	Liver
COSM1363039	c.3128delC	p.P1043fs*18	Deletion - Frameshift	Large_intestine
COSM4147292	c.3577A>C	p.T1193P	Substitution - Missense	Prostate
COSM4043538	c.1052A>G	p.N351S	Substitution - Missense	Stomach
COSM4911848	c.2302G>A	p.E768K	Substitution - Missense	Liver
COSM3398890	c.2593G>A	p.A865T	Substitution - Missense	Central_nervous_system
COSM3987068	c.3316A>G	p.I1106V	Substitution - Missense	Kidney
COSM4801391	c.1741A>T	p.M581L	Substitution - Missense	Liver
COSM4728326	c.3567A>C	p.P1189P	Substitution - coding silent	Large_intestine
COSM4845249	c.1100C>G	p.S367*	Substitution - Nonsense	Cervix
COSM5108723	c.3346C>A	p.L1116M	Substitution - Missense	Large_intestine
COSM1363037	c.3274_3276delCCT	p.P1092delP	Deletion - In frame	Large_intestine
COSM5567895	c.801C>T	p.S267S	Substitution - coding silent	Prostate
COSM549226	c.3120T>C	p.V1040V	Substitution - coding silent	Kidney
COSM4755860	c.1889G>C	p.R630P	Substitution - Missense	Stomach
COSM1705806	c.734C>T	p.T245I	Substitution - Missense	Skin
COSM3812559	c.2156T>G	p.V719G	Substitution - Missense	Breast
COSM5650454	c.2932G>T	p.A978S	Substitution - Missense	Haematopoietic_and_lymphoid_tissue
COSM468654	c.3225T>G	p.G1075G	Substitution - coding silent	Kidney
COSM4575584	c.457C>T	p.L153L	Substitution - coding silent	Bone
COSM4728344	c.1354G>A	p.G452S	Substitution - Missense	Large_intestine
COSM3463384	c.2199C>T	p.F733F	Substitution - coding silent	Large_intestine
COSM4043526	c.1900G>A	p.E634K	Substitution - Missense	Stomach
COSM5361742	c.1231G>A	p.D411N	Substitution - Missense	Large_intestine
COSM4787837	c.3602C>T	p.A1201V	Substitution - Missense	Liver
COSM3731429	c.3128_3129insC	p.G1044fs*33	Insertion - Frameshift	Large_intestine
COSM3987071	c.516C>A	p.N172K	Substitution - Missense	Kidney
COSM3463369	c.2712G>A	p.R904R	Substitution - coding silent	Skin
COSM1363039	c.3128delC	p.P1043fs*18	Deletion - Frameshift	Large_intestine
COSM1299655	c.1556G>A	p.R519Q	Substitution - Missense	Urinary_tract
COSM4728332	c.2771G>T	p.R924M	Substitution - Missense	Large_intestine
COSM1299657	c.1183G>C	p.E395Q	Substitution - Missense	Urinary_tract
COSM3872079	c.1049C>T	p.P350L	Substitution - Missense	Skin
COSM5759082	c.430C>A	p.L144M	Substitution - Missense	Bone
COSM3968325	c.2009G>A	p.G670D	Substitution - Missense	Central_nervous_system
COSM4637688	c.2903G>T	p.G968V	Substitution - Missense	Large_intestine
COSM1606377	c.2204T>A	p.L735Q	Substitution - Missense	Liver
COSM4629975	c.1288G>A	p.A430T	Substitution - Missense	Large_intestine
COSM468658	c.1605T>C	p.A535A	Substitution - coding silent	Kidney
COSM3463405	c.389C>T	p.S130F	Substitution - Missense	Skin
COSM941549	c.2839C>T	p.R947W	Substitution - Missense	Large_intestine
COSM5637613	c.94G>C	p.G32R	Substitution - Missense	Oesophagus
COSM5142245	c.2622+6G>A	p.?	Unknown	Large_intestine
COSM3980150	c.1462C>T	p.R488*	Substitution - Nonsense	Oesophagus
COSM4147295	c.3243G>T	p.L1081F	Substitution - Missense	Thyroid
COSM3368884	c.1336C>G	p.L446V	Substitution - Missense	Thyroid
COSM5962256	c.1577C>A	p.P526Q	Substitution - Missense	Breast
COSM941567	c.322C>T	p.R108C	Substitution - Missense	Endometrium
COSM941571	c.165G>T	p.Q55H	Substitution - Missense	Endometrium
COSM5652322	c.1193A>C	p.N398T	Substitution - Missense	Haematopoietic_and_lymphoid_tissue
COSM1363039	c.3128delC	p.P1043fs*18	Deletion - Frameshift	Large_intestine
COSM383103	c.880G>T	p.G294*	Substitution - Nonsense	Lung
COSM5611962	c.2668C>G	p.L890V	Substitution - Missense	Adrenal_gland
COSM21745	c.1840G>A	p.E614K	Substitution - Missense	Skin
COSM1363059	c.1072C>T	p.P358S	Substitution - Missense	Large_intestine
COSM5100986	c.1770+3A>G	p.?	Unknown	Large_intestine
COSM3968328	c.1420C>T	p.R474*	Substitution - Nonsense	Central_nervous_system
COSM694501	c.3022G>A	p.G1008S	Substitution - Missense	Lung
COSM5801260	c.138_140delCAA	p.N46delN	Deletion - In frame	Breast
COSM3463362	c.3438C>T	p.N1146N	Substitution - coding silent	Skin
COSM1665985	c.1770+1G>A	p.?	Unknown	Kidney
COSM3812565	c.917C>T	p.S306L	Substitution - Missense	Breast
COSM1363045	c.2590G>A	p.A864T	Substitution - Missense	Large_intestine
COSM5637193	c.525C>T	p.S175S	Substitution - coding silent	Oesophagus
COSM5093656	c.708+6C>T	p.?	Unknown	Large_intestine
COSM4755857	c.1987C>T	p.P663S	Substitution - Missense	Stomach
COSM4209477	c.574C>T	p.R192*	Substitution - Nonsense	Stomach
COSM303249	c.1833+1G>C	p.?	Unknown	Central_nervous_system
COSM694497	c.1889G>A	p.R630H	Substitution - Missense	Lung
COSM3463366	c.3130G>A	p.G1044R	Substitution - Missense	Skin
COSM1747145	c.3480G>A	p.G1160G	Substitution - coding silent	Urinary_tract
COSM4597383	c.802C>T	p.R268C	Substitution - Missense	Upper_aerodigestive_tract
COSM3731429	c.3128_3129insC	p.G1044fs*33	Insertion - Frameshift	Large_intestine
COSM164470	c.1411G>C	p.D471H	Substitution - Missense	Breast
COSM348716	c.1183G>A	p.E395K	Substitution - Missense	Lung
COSM1188526	c.3397C>T	p.P1133S	Substitution - Missense	Lung
COSM72738	c.1433A>T	p.Q478L	Substitution - Missense	Ovary
COSM694487	c.215C>T	p.P72L	Substitution - Missense	Skin
COSM431499	c.1624G>C	p.V542L	Substitution - Missense	Breast
COSM694491	c.633-2A>T	p.?	Unknown	Lung
COSM1717688	c.3401A>C	p.N1134T	Substitution - Missense	Adrenal_gland
COSM4777541	c.1391C>G	p.A464G	Substitution - Missense	Prostate
COSM1717688	c.3401A>C	p.N1134T	Substitution - Missense	Thyroid
COSM1299659	c.911C>G	p.S304C	Substitution - Missense	Urinary_tract
COSM4147292	c.3577A>C	p.T1193P	Substitution - Missense	Prostate
COSM941559	c.1392C>A	p.A464A	Substitution - coding silent	Endometrium
COSM6000759	c.67C>A	p.Q23K	Substitution - Missense	Prostate
COSM21887	c.2703C>G	p.I901M	Substitution - Missense	Lung
COSM1363039	c.3128delC	p.P1043fs*18	Deletion - Frameshift	Large_intestine
COSM4755863	c.1393T>C	p.Y465H	Substitution - Missense	Stomach
COSM5637613	c.94G>C	p.G32R	Substitution - Missense	Oesophagus
COSM694499	c.2370C>G	p.T790T	Substitution - coding silent	Lung
COSM5784359	c.747T>C	p.N249N	Substitution - coding silent	Breast
COSM3731429	c.3128_3129insC	p.G1044fs*33	Insertion - Frameshift	Large_intestine
COSM941549	c.2839C>T	p.R947W	Substitution - Missense	Large_intestine
COSM5114365	c.2551C>T	p.R851W	Substitution - Missense	Large_intestine
COSM1470651	c.3529G>C	p.V1177L	Substitution - Missense	Prostate
COSM5597637	c.740C>T	p.T247I	Substitution - Missense	Skin
COSM4043550	c.156G>A	p.L52L	Substitution - coding silent	Stomach
COSM3463402	c.712C>T	p.H238Y	Substitution - Missense	Skin
COSM1363049	c.2373C>T	p.S791S	Substitution - coding silent	Large_intestine
COSM1363063	c.837T>C	p.D279D	Substitution - coding silent	Large_intestine
COSM1628716	c.1089A>G	p.T363T	Substitution - coding silent	Liver
COSM4147292	c.3577A>C	p.T1193P	Substitution - Missense	Prostate
COSM4893248	c.3505C>T	p.Q1169*	Substitution - Nonsense	Skin
COSM1677081	c.356G>A	p.R119H	Substitution - Missense	Haematopoietic_and_lymphoid_tissue
COSM4043532	c.1546G>C	p.A516P	Substitution - Missense	Stomach
COSM941543	c.3218T>G	p.V1073G	Substitution - Missense	Endometrium
COSM1705802	c.1339C>T	p.P447S	Substitution - Missense	Skin
COSM1363037	c.3274_3276delCCT	p.P1092delP	Deletion - In frame	Large_intestine
COSM4043535	c.1459C>T	p.R487C	Substitution - Missense	Stomach
COSM3463375	c.2657C>T	p.S886F	Substitution - Missense	Skin
COSM3463396	c.1341C>G	p.P447P	Substitution - coding silent	Skin
COSM5015123	c.2718T>G	p.F906L	Substitution - Missense	Kidney
COSM348718	c.460G>A	p.G154R	Substitution - Missense	Lung
COSM4982950	c.2257G>C	p.E753Q	Substitution - Missense	Oesophagus
COSM1606375	c.2762A>G	p.E921G	Substitution - Missense	Liver
COSM1747147	c.1142-1G>C	p.?	Unknown	Urinary_tract
COSM3731429	c.3128_3129insC	p.G1044fs*33	Insertion - Frameshift	Large_intestine
COSM383103	c.880G>T	p.G294*	Substitution - Nonsense	Lung
COSM941565	c.997G>T	p.E333*	Substitution - Nonsense	Endometrium
COSM13925	c.2736C>T	p.I912I	Substitution - coding silent	Lung
COSM1935800	c.1355G>A	p.G452D	Substitution - Missense	Large_intestine
COSM4487814	c.3233C>T	p.P1078L	Substitution - Missense	Skin
COSM4575581	c.2301T>C	p.D767D	Substitution - coding silent	Bone
COSM4801850	c.2518G>A	p.E840K	Substitution - Missense	Liver
COSM4209407	c.3372G>A	p.P1124P	Substitution - coding silent	Large_intestine
COSM5627767	c.810G>C	p.K270N	Substitution - Missense	Oesophagus
COSM4915844	c.1912C>G	p.H638D	Substitution - Missense	Liver
COSM5104043	c.881delG	p.G294fs*46	Deletion - Frameshift	Large_intestine
COSM941535	c.3499G>T	p.A1167S	Substitution - Missense	Endometrium
COSM1226786	c.3148C>T	p.P1050S	Substitution - Missense	Large_intestine
COSM5038166	c.1583C>T	p.T528I	Substitution - Missense	Skin
COSM941545	c.3173C>A	p.P1058H	Substitution - Missense	Endometrium
COSM5068821	c.1866A>C	p.K622N	Substitution - Missense	Large_intestine
COSM4877494	c.636C>T	p.Y212Y	Substitution - coding silent	Prostate
COSM1363033	c.3523G>A	p.A1175T	Substitution - Missense	Large_intestine
COSM4166791	c.2007G>A	p.S669S	Substitution - coding silent	Pituitary
COSM5375616	c.1928C>T	p.P643L	Substitution - Missense	Skin
COSM1226788	c.328G>A	p.D110N	Substitution - Missense	Large_intestine
COSM4773165	c.1242G>T	p.E414D	Substitution - Missense	Stomach
COSM3723643	c.53C>T	p.A18V	Substitution - Missense	Upper_aerodigestive_tract
COSM3463390	c.1724T>C	p.F575S	Substitution - Missense	Skin
COSM3731429	c.3128_3129insC	p.G1044fs*33	Insertion - Frameshift	Large_intestine
COSM1363039	c.3128delC	p.P1043fs*18	Deletion - Frameshift	Large_intestine
COSM39142	c.985C>T	p.R329C	Substitution - Missense	Central_nervous_system
COSM138885	c.1255G>T	p.E419*	Substitution - Nonsense	Skin
COSM3731429	c.3128_3129insC	p.G1044fs*33	Insertion - Frameshift	Breast
COSM1363057	c.1424T>C	p.L475P	Substitution - Missense	Large_intestine
COSM5104043	c.881delG	p.G294fs*46	Deletion - Frameshift	Large_intestine
COSM4442365	c.2665G>A	p.A889T	Substitution - Missense	Large_intestine
COSM4801391	c.1741A>T	p.M581L	Substitution - Missense	Liver
COSM1363065	c.575G>A	p.R192Q	Substitution - Missense	Large_intestine
COSM1363037	c.3274_3276delCCT	p.P1092delP	Deletion - In frame	Large_intestine
COSM1363039	c.3128delC	p.P1043fs*18	Deletion - Frameshift	Large_intestine
COSM4043541	c.846C>T	p.N282N	Substitution - coding silent	Stomach
COSM291627	c.2263G>T	p.G755W	Substitution - Missense	Large_intestine
COSM431495	c.2752G>A	p.E918K	Substitution - Missense	Breast
COSM3463364	c.3382G>A	p.G1128S	Substitution - Missense	Skin
COSM305592	c.3478G>A	p.G1160R	Substitution - Missense	Soft_tissue
COSM21887	c.2703C>G	p.I901M	Substitution - Missense	Stomach
COSM4487564	c.3109C>T	p.P1037S	Substitution - Missense	Skin
COSM3463408	c.67C>T	p.Q23*	Substitution - Nonsense	Skin
COSM3704282	c.373A>T	p.M125L	Substitution - Missense	Liver
COSM468656	c.2396A>G	p.E799G	Substitution - Missense	Kidney
COSM4150246	c.1287C>T	p.Y429Y	Substitution - coding silent	Ovary
COSM4575587	c.339T>C	p.N113N	Substitution - coding silent	Bone
COSM1363037	c.3274_3276delCCT	p.P1092delP	Deletion - In frame	Large_intestine
COSM941549	c.2839C>T	p.R947W	Substitution - Missense	Endometrium
COSM1492957	c.1352A>T	p.N451I	Substitution - Missense	Kidney
COSM694495	c.1452C>T	p.T484T	Substitution - coding silent	Lung
COSM4043523	c.2430C>T	p.S810S	Substitution - coding silent	Stomach
COSM4043544	c.272G>T	p.C91F	Substitution - Missense	Stomach
COSM468654	c.3225T>G	p.G1075G	Substitution - coding silent	Kidney
COSM694493	c.1258C>T	p.Q420*	Substitution - Nonsense	Lung
COSM4147292	c.3577A>C	p.T1193P	Substitution - Missense	Prostate
COSM4728335	c.2710C>T	p.R904W	Substitution - Missense	Large_intestine
COSM1935761	c.2431G>T	p.E811*	Substitution - Nonsense	Lung
COSM315438	c.30delC	p.N11fs*2	Deletion - Frameshift	Lung
COSM3463378	c.2376G>A	p.E792E	Substitution - coding silent	Skin
COSM4728341	c.2248C>T	p.R750W	Substitution - Missense	Large_intestine
COSM5072187	c.723G>A	p.W241*	Substitution - Nonsense	Large_intestine
COSM1606377	c.2204T>A	p.L735Q	Substitution - Missense	Liver
COSM3731429	c.3128_3129insC	p.G1044fs*33	Insertion - Frameshift	Large_intestine
COSM3398893	c.483G>C	p.K161N	Substitution - Missense	Central_nervous_system
COSM1476743	c.1121G>A	p.G374D	Substitution - Missense	Breast
COSM5552218	c.1302C>G	p.D434E	Substitution - Missense	Prostate
COSM1226788	c.328G>A	p.D110N	Substitution - Missense	Oesophagus
COSM3463393	c.1396C>T	p.R466*	Substitution - Nonsense	Skin
COSM3987066	c.3343A>C	p.N1115H	Substitution - Missense	Kidney
COSM4765802	c.3129_3130insC	p.G1044fs*33	Insertion - Frameshift	Stomach
COSM21745	c.1840G>A	p.E614K	Substitution - Missense	Skin
COSM3688337	c.3606G>A	p.P1202P	Substitution - coding silent	Large_intestine
COSM3781030	c.1986A>C	p.Q662H	Substitution - Missense	Pancreas
COSM5051766	c.2254+2T>C	p.?	Unknown	Stomach
COSM3463387	c.2052C>T	p.V684V	Substitution - coding silent	Skin
COSM1684969	c.3618G>A	p.T1206T	Substitution - coding silent	Lung
COSM3463384	c.2199C>T	p.F733F	Substitution - coding silent	Skin
COSM4043517	c.2580C>T	p.T860T	Substitution - coding silent	Stomach
COSM3463381	c.2268T>G	p.N756K	Substitution - Missense	Skin

> Text Mining based Variations

[ TOP ]

PMID	Variation	Cancer	Evidence
23030715	Mutation	Gastric Carcinoma; Colorectal Carcinoma	Frameshift mutations of a chromatin-remodeling gene SMARCC2 in gastric and colorectal cancers with microsatellite instability.

Summary
Symbol	SMARCC2
Name	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
Aliases	BAF170; CRACC2; BRG1-associated factor 170; SWI/SNF complex 170 kDa subunit; SWI/SNF-related matrix-associat ......
Location	12q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Post-translational modification (PTM)

> Post-translational modification (PTM)

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Filter By:

Uniprot ID	Position	Amino Acid	Description	Upstream Enzyme	Affected By Mutation	Amino Acid Sequence Variant
Q8TAQ2	286	S	Phosphoserine	-	No	None detected
Q8TAQ2	302	S	Phosphoserine	-	No	None detected
Q8TAQ2	304	S	Phosphoserine	-	Yes	p.S304C (cancer: BLCA)
Q8TAQ2	306	S	Phosphoserine	-	Yes	p.S306L (cancer: BRCA)
Q8TAQ2	326	K	N6-acetyllysine	-	No	None detected
Q8TAQ2	347	S	Phosphoserine	-	No	None detected
Q8TAQ2	387	S	Phosphoserine	-	No	None detected
Q8TAQ2	548	T	Phosphothreonine	-	No	None detected
Q8TAQ2	813	S	Phosphoserine	-	No	None detected

Summary
Symbol	SMARCC2
Name	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
Aliases	BAF170; CRACC2; BRG1-associated factor 170; SWI/SNF complex 170 kDa subunit; SWI/SNF-related matrix-associat ......
Location	12q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Expression analysis in primary tumor tissue from TCGA > Expression level in cancer cell line from CCLE > Expression level in human normal tissue from HPA > Text mining based expression change

> The Cancer Genome Atlas (TCGA)

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Differential expression analysis for cancers with more than 10 normal samples

Cancer	Full Name	# N	# T	Median (N)	Median (T)	LogFC	Adj. P	Status
BLCA	Bladder urothelial carcinoma	19	408	7.054	7.117	0.103	0.481	NS
BRCA	Breast invasive carcinoma	112	1100	7.333	7.155	-0.187	9.12e-06	NS
CESC	Cervical and endocervical cancers	3	306	7.094	6.947	NA	NA	NA
COAD	Colon adenocarcinoma	41	459	6.943	6.862	-0.051	0.474	NS
ESCA	Esophageal carcinoma	11	185	6.99	6.994	0.024	0.887	NS
GBM	Glioblastoma multiforme	5	166	7.852	7.391	NA	NA	NA
HNSC	Head and Neck squamous cell carcinoma	44	522	6.595	6.461	-0.153	0.0314	NS
KIRC	Kidney renal clear cell carcinoma	72	534	6.956	7.101	0.164	5.61e-05	NS
KIRP	Kidney renal papillary cell carcinoma	32	291	7.003	7.329	0.315	5.39e-05	NS
LAML	Acute Myeloid Leukemia	0	173	NA	8.005	NA	NA	NA
LGG	Brain Lower Grade Glioma	0	530	NA	8.183	NA	NA	NA
LIHC	Liver hepatocellular carcinoma	50	373	5.537	5.832	0.348	1.78e-07	NS
LUAD	Lung adenocarcinoma	59	517	7.055	6.983	-0.018	0.816	NS
LUSC	Lung squamous cell carcinoma	51	501	6.995	6.874	-0.096	0.21	NS
OV	Ovarian serous cystadenocarcinoma	0	307	NA	7.52	NA	NA	NA
PAAD	Pancreatic adenocarcinoma	4	179	6.708	6.839	NA	NA	NA
PCPG	Pheochromocytoma and Paraganglioma	3	184	6.974	7.157	NA	NA	NA
PRAD	Prostate adenocarcinoma	52	498	7.185	7.212	0.09	0.0212	NS
READ	Rectum adenocarcinoma	10	167	6.837	6.888	0.131	0.428	NS
SARC	Sarcoma	2	263	6.62	6.713	NA	NA	NA
SKCM	Skin Cutaneous Melanoma	1	472	6.778	6.99	NA	NA	NA
STAD	Stomach adenocarcinoma	35	415	6.965	7.002	0.113	0.147	NS
TGCT	Testicular Germ Cell Tumors	0	156	NA	6.277	NA	NA	NA
THCA	Thyroid carcinoma	59	509	7.127	7.242	0.128	0.0015	NS
THYM	Thymoma	2	120	7.622	7.25	NA	NA	NA
UCEC	Uterine Corpus Endometrial Carcinoma	35	546	7.308	7.16	-0.209	0.00576	NS

> Cancer Cell Line Encyclopedia (CCLE)

[ TOP ]

Tissue	Cell Line	Expression Level (Microarray)
Autonomic ganglia	CHP126	8.7
Autonomic ganglia	CHP212	7.8
Autonomic ganglia	IMR32	8.9
Autonomic ganglia	KELLY	7.9
Autonomic ganglia	KPNRTBM1	9.1
Autonomic ganglia	KPNSI9S	7.8
Autonomic ganglia	KPNYN	8.7
Autonomic ganglia	MHHNB11	8.8
Autonomic ganglia	NB1	8.5
Autonomic ganglia	NH6	8.5
Autonomic ganglia	SHSY5Y	8.9
Autonomic ganglia	SIMA	8.7
Autonomic ganglia	SKNAS	8.1
Autonomic ganglia	SKNBE2	8.2
Autonomic ganglia	SKNDZ	8.7
Autonomic ganglia	SKNFI	8.7
Autonomic ganglia	SKNSH	7.9
Biliary tract	HUCCT1	7.9
Biliary tract	HUH28	8.2
Biliary tract	SNU1079	8.2
Biliary tract	SNU1196	7.9
Biliary tract	SNU245	8.6
Biliary tract	SNU308	8.5
Biliary tract	SNU478	8.1
Bone	143B	8
Bone	A673	8.2
Bone	CADOES1	8.2
Bone	CAL78	8.5
Bone	G292CLONEA141B1	8.2
Bone	HOS	7.8
Bone	HS706T	7.4
Bone	HS737T	7.8
Bone	HS819T	7.9
Bone	HS821T	7.1
Bone	HS822T	7.8
Bone	HS863T	7.4
Bone	HS870T	7.4
Bone	HS888T	8.2
Bone	MG63	8.4
Bone	MHHES1	9.2
Bone	OUMS27	7.3
Bone	RDES	8.7
Bone	SJSA1	7.8
Bone	SKES1	8.6
Bone	SKNMC	8.3
Bone	SW1353	7.9
Bone	T173	7.3
Bone	TC71	8
Bone	U2OS	8.3
Breast	AU565	8
Breast	BT20	7.6
Breast	BT474	7.9
Breast	BT483	9
Breast	BT549	7.9
Breast	CAL120	8.1
Breast	CAL148	9.2
Breast	CAL51	8.8
Breast	CAL851	7.6
Breast	CAMA1	8.4
Breast	DU4475	8.4
Breast	EFM192A	8.3
Breast	EFM19	7.8
Breast	EVSAT	7.5
Breast	HCC1143	7.3
Breast	HCC1187	8
Breast	HCC1395	7.6
Breast	HCC1419	8.1
Breast	HCC1428	8.5
Breast	HCC1500	8.1
Breast	HCC1569	8.1
Breast	HCC1599	8.4
Breast	HCC1806	9.2
Breast	HCC1937	7.4
Breast	HCC1954	7.7
Breast	HCC202	8.7
Breast	HCC2157	7.3
Breast	HCC2218	7.6
Breast	HCC38	7.6
Breast	HCC70	8.1
Breast	HDQP1	8.3
Breast	HMC18	8.2
Breast	HS274T	7.6
Breast	HS281T	7.9
Breast	HS343T	7.6
Breast	HS578T	7.3
Breast	HS606T	7.5
Breast	HS739T	7.6
Breast	HS742T	7.4
Breast	JIMT1	7.6
Breast	KPL1	8.8
Breast	MCF7	8.2
Breast	MDAMB134VI	9.2
Breast	MDAMB157	7.8
Breast	MDAMB175VII	8
Breast	MDAMB231	7.3
Breast	MDAMB361	7.7
Breast	MDAMB415	8.3
Breast	MDAMB436	6.8
Breast	MDAMB453	7.9
Breast	MDAMB468	7.9
Breast	SKBR3	8
Breast	T47D	8.3
Breast	UACC812	9.5
Breast	UACC893	8.2
Breast	YMB1	7.8
Breast	ZR751	8.1
Breast	ZR7530	8.2
Central nervous system	1321N1	8.1
Central nervous system	42MGBA	7.3
Central nervous system	8MGBA	7.3
Central nervous system	A172	7.9
Central nervous system	AM38	8
Central nervous system	BECKER	7.6
Central nervous system	CAS1	8.1
Central nervous system	CCFSTTG1	7.9
Central nervous system	D283MED	8.3
Central nervous system	D341MED	8.7
Central nervous system	DAOY	8.2
Central nervous system	DBTRG05MG	7.8
Central nervous system	DKMG	8.1
Central nervous system	GAMG	7.9
Central nervous system	GB1	8.6
Central nervous system	GI1	8.5
Central nervous system	GMS10	7
Central nervous system	GOS3	8.3
Central nervous system	H4	7.8
Central nervous system	HS683	8.5
Central nervous system	KALS1	7.3
Central nervous system	KG1C	8.2
Central nervous system	KNS42	8.1
Central nervous system	KNS60	7.8
Central nervous system	KNS81	7.8
Central nervous system	KS1	7.9
Central nervous system	LN18	7.9
Central nervous system	LN229	8.5
Central nervous system	M059K	7.5
Central nervous system	MOGGCCM	7.7
Central nervous system	MOGGUVW	7.6
Central nervous system	NMCG1	8.2
Central nervous system	ONS76	8.3
Central nervous system	SF126	7.7
Central nervous system	SF295	8
Central nervous system	SNB19	7.5
Central nervous system	SNU1105	8
Central nervous system	SNU201	8.2
Central nervous system	SNU466	8.3
Central nervous system	SNU489	8.7
Central nervous system	SNU626	8.5
Central nervous system	SNU738	8
Central nervous system	SW1088	8.3
Central nervous system	SW1783	7.7
Central nervous system	T98G	8.3
Central nervous system	TM31	7.8
Central nervous system	U118MG	9
Central nervous system	U138MG	8.4
Central nervous system	U251MG	7.9
Central nervous system	U87MG	8.1
Central nervous system	YH13	8
Central nervous system	YKG1	7.7
Endometrium	AN3CA	8.3
Endometrium	COLO684	8.8
Endometrium	EFE184	8.6
Endometrium	EN	8.1
Endometrium	ESS1	7.8
Endometrium	HEC108	7.7
Endometrium	HEC151	7.4
Endometrium	HEC1A	7.7
Endometrium	HEC1B	8.6
Endometrium	HEC251	6.9
Endometrium	HEC265	7.3
Endometrium	HEC50B	7.5
Endometrium	HEC59	7.7
Endometrium	HEC6	7.8
Endometrium	ISHIKAWAHERAKLIO02ER	7.4
Endometrium	JHUEM1	7.7
Endometrium	JHUEM2	7.5
Endometrium	JHUEM3	8.5
Endometrium	KLE	7.8
Endometrium	MFE280	9.2
Endometrium	MFE296	7.8
Endometrium	MFE319	7.1
Endometrium	RL952	8.4
Endometrium	SNGM	7.6
Endometrium	SNU1077	7.9
Endometrium	SNU685	8.8
Endometrium	TEN	8.2
Haematopoietic and lymphoid	697	8.9
Haematopoietic and lymphoid	A3KAW	7.6
Haematopoietic and lymphoid	A4FUK	9.1
Haematopoietic and lymphoid	ALLSIL	9.1
Haematopoietic and lymphoid	AML193	8.8
Haematopoietic and lymphoid	AMO1	8.7
Haematopoietic and lymphoid	BCP1	8
Haematopoietic and lymphoid	BDCM	8.1
Haematopoietic and lymphoid	BL41	8.6
Haematopoietic and lymphoid	BL70	8.9
Haematopoietic and lymphoid	BV173	8.7
Haematopoietic and lymphoid	CA46	8.2
Haematopoietic and lymphoid	CI1	8.7
Haematopoietic and lymphoid	CMK115	7.7
Haematopoietic and lymphoid	CMK86	9.3
Haematopoietic and lymphoid	CMK	8.4
Haematopoietic and lymphoid	CMLT1	8.4
Haematopoietic and lymphoid	COLO775	9.1
Haematopoietic and lymphoid	DAUDI	8.4
Haematopoietic and lymphoid	DB	8.3
Haematopoietic and lymphoid	DEL	7.7
Haematopoietic and lymphoid	DND41	9
Haematopoietic and lymphoid	DOHH2	8.9
Haematopoietic and lymphoid	EB1	8.2
Haematopoietic and lymphoid	EB2	7.9
Haematopoietic and lymphoid	EHEB	8.7
Haematopoietic and lymphoid	EJM	8.9
Haematopoietic and lymphoid	EM2	8
Haematopoietic and lymphoid	EOL1	8.6
Haematopoietic and lymphoid	F36P	9.2
Haematopoietic and lymphoid	GA10	8.2
Haematopoietic and lymphoid	GDM1	8.4
Haematopoietic and lymphoid	GRANTA519	8.6
Haematopoietic and lymphoid	HDLM2	8.2
Haematopoietic and lymphoid	HDMYZ	7.5
Haematopoietic and lymphoid	HEL9217	8.6
Haematopoietic and lymphoid	HEL	9.6
Haematopoietic and lymphoid	HH	8.4
Haematopoietic and lymphoid	HL60	8.7
Haematopoietic and lymphoid	HPBALL	9.1
Haematopoietic and lymphoid	HS604T	7.8
Haematopoietic and lymphoid	HS611T	8.1
Haematopoietic and lymphoid	HS616T	7.8
Haematopoietic and lymphoid	HS751T	7.3
Haematopoietic and lymphoid	HT	8
Haematopoietic and lymphoid	HTK	8.3
Haematopoietic and lymphoid	HUNS1	8.1
Haematopoietic and lymphoid	HUT102	7.8
Haematopoietic and lymphoid	HUT78	8
Haematopoietic and lymphoid	JEKO1	9.3
Haematopoietic and lymphoid	JK1	8.7
Haematopoietic and lymphoid	JM1	9.6
Haematopoietic and lymphoid	JURKAT	8.6
Haematopoietic and lymphoid	JURLMK1	8.9
Haematopoietic and lymphoid	JVM2	8.8
Haematopoietic and lymphoid	JVM3	8.9
Haematopoietic and lymphoid	K562	8.6
Haematopoietic and lymphoid	KARPAS299	8.2
Haematopoietic and lymphoid	KARPAS422	8.4
Haematopoietic and lymphoid	KARPAS620	8.6
Haematopoietic and lymphoid	KASUMI1	8.5
Haematopoietic and lymphoid	KASUMI2	9.1
Haematopoietic and lymphoid	KASUMI6	8.7
Haematopoietic and lymphoid	KCL22	9.1
Haematopoietic and lymphoid	KE37	9.3
Haematopoietic and lymphoid	KE97	8.2
Haematopoietic and lymphoid	KG1	7.7
Haematopoietic and lymphoid	KHM1B	7.6
Haematopoietic and lymphoid	KIJK	7.6
Haematopoietic and lymphoid	KMH2	8.9
Haematopoietic and lymphoid	KMM1	8.1
Haematopoietic and lymphoid	KMS11	9.5
Haematopoietic and lymphoid	KMS12BM	8.5
Haematopoietic and lymphoid	KMS18	8.9
Haematopoietic and lymphoid	KMS20	7.9
Haematopoietic and lymphoid	KMS21BM	7.3
Haematopoietic and lymphoid	KMS26	8
Haematopoietic and lymphoid	KMS27	7.9
Haematopoietic and lymphoid	KMS28BM	8.2
Haematopoietic and lymphoid	KMS34	8.1
Haematopoietic and lymphoid	KO52	8.1
Haematopoietic and lymphoid	KOPN8	9.6
Haematopoietic and lymphoid	KU812	8
Haematopoietic and lymphoid	KYO1	8.1
Haematopoietic and lymphoid	L1236	8.5
Haematopoietic and lymphoid	L363	7.9
Haematopoietic and lymphoid	L428	9.3
Haematopoietic and lymphoid	L540	8.5
Haematopoietic and lymphoid	LAMA84	9
Haematopoietic and lymphoid	LOUCY	9
Haematopoietic and lymphoid	LP1	9
Haematopoietic and lymphoid	M07E	8.7
Haematopoietic and lymphoid	MC116	8.1
Haematopoietic and lymphoid	ME1	9
Haematopoietic and lymphoid	MEC1	7.7
Haematopoietic and lymphoid	MEC2	8.8
Haematopoietic and lymphoid	MEG01	8.1
Haematopoietic and lymphoid	MHHCALL2	8.8
Haematopoietic and lymphoid	MHHCALL3	9.2
Haematopoietic and lymphoid	MHHCALL4	8.8
Haematopoietic and lymphoid	MINO	8.4
Haematopoietic and lymphoid	MJ	8.4
Haematopoietic and lymphoid	MM1S	7.9
Haematopoietic and lymphoid	MOLM13	8.4
Haematopoietic and lymphoid	MOLM16	8.6
Haematopoietic and lymphoid	MOLM6	8.6
Haematopoietic and lymphoid	MOLP2	8.3
Haematopoietic and lymphoid	MOLP8	7.6
Haematopoietic and lymphoid	MOLT13	8.6
Haematopoietic and lymphoid	MOLT16	8.9
Haematopoietic and lymphoid	MOLT4	8
Haematopoietic and lymphoid	MONOMAC1	8.7
Haematopoietic and lymphoid	MONOMAC6	8.2
Haematopoietic and lymphoid	MOTN1	9
Haematopoietic and lymphoid	MUTZ5	8.9
Haematopoietic and lymphoid	MV411	9.2
Haematopoietic and lymphoid	NALM19	9.3
Haematopoietic and lymphoid	NALM1	8.9
Haematopoietic and lymphoid	NALM6	8.8
Haematopoietic and lymphoid	NAMALWA	9.6
Haematopoietic and lymphoid	NB4	8.4
Haematopoietic and lymphoid	NCIH929	7.5
Haematopoietic and lymphoid	NCO2	8.1
Haematopoietic and lymphoid	NOMO1	8.2
Haematopoietic and lymphoid	NUDHL1	9.3
Haematopoietic and lymphoid	NUDUL1	9.2
Haematopoietic and lymphoid	OCIAML2	8.8
Haematopoietic and lymphoid	OCIAML3	9
Haematopoietic and lymphoid	OCIAML5	8.5
Haematopoietic and lymphoid	OCILY10	8.7
Haematopoietic and lymphoid	OCILY19	9.3
Haematopoietic and lymphoid	OCILY3	8.1
Haematopoietic and lymphoid	OCIM1	9
Haematopoietic and lymphoid	OPM2	8.3
Haematopoietic and lymphoid	P12ICHIKAWA	8.7
Haematopoietic and lymphoid	P31FUJ	8
Haematopoietic and lymphoid	P3HR1	8.7
Haematopoietic and lymphoid	PCM6	8.4
Haematopoietic and lymphoid	PEER	8.7
Haematopoietic and lymphoid	PF382	9.5
Haematopoietic and lymphoid	PFEIFFER	8.5
Haematopoietic and lymphoid	PL21	8.7
Haematopoietic and lymphoid	RAJI	8.3
Haematopoietic and lymphoid	RCHACV	8.5
Haematopoietic and lymphoid	REC1	9.8
Haematopoietic and lymphoid	REH	9
Haematopoietic and lymphoid	RI1	9.5
Haematopoietic and lymphoid	RL	8.1
Haematopoietic and lymphoid	RPMI8226	8.2
Haematopoietic and lymphoid	RPMI8402	9.4
Haematopoietic and lymphoid	RS411	8.6
Haematopoietic and lymphoid	SEM	8.3
Haematopoietic and lymphoid	SET2	8.5
Haematopoietic and lymphoid	SIGM5	8.6
Haematopoietic and lymphoid	SKM1	7.7
Haematopoietic and lymphoid	SKMM2	8.8
Haematopoietic and lymphoid	SR786	8.1
Haematopoietic and lymphoid	ST486	8.8
Haematopoietic and lymphoid	SUDHL10	9.2
Haematopoietic and lymphoid	SUDHL1	7.8
Haematopoietic and lymphoid	SUDHL4	9.4
Haematopoietic and lymphoid	SUDHL5	8.8
Haematopoietic and lymphoid	SUDHL6	8.8
Haematopoietic and lymphoid	SUDHL8	9.9
Haematopoietic and lymphoid	SUPB15	8.5
Haematopoietic and lymphoid	SUPHD1	8.2
Haematopoietic and lymphoid	SUPM2	7.8
Haematopoietic and lymphoid	SUPT11	9.2
Haematopoietic and lymphoid	SUPT1	8.5
Haematopoietic and lymphoid	TALL1	8.7
Haematopoietic and lymphoid	TF1	8.1
Haematopoietic and lymphoid	THP1	7.8
Haematopoietic and lymphoid	TO175T	8
Haematopoietic and lymphoid	TOLEDO	8.9
Haematopoietic and lymphoid	U266B1	8.1
Haematopoietic and lymphoid	U937	7.8
Haematopoietic and lymphoid	UT7	9
Haematopoietic and lymphoid	WSUDLCL2	8.9
Kidney	769P	7.7
Kidney	786O	7.2
Kidney	A498	8.3
Kidney	A704	7.8
Kidney	ACHN	8.5
Kidney	BFTC909	8
Kidney	CAKI1	8
Kidney	CAKI2	8.4
Kidney	CAL54	8.8
Kidney	KMRC1	7.2
Kidney	KMRC20	8.3
Kidney	KMRC2	8
Kidney	KMRC3	8.4
Kidney	OSRC2	8.5
Kidney	RCC10RGB	8.6
Kidney	SNU1272	8.4
Kidney	SNU349	9.1
Kidney	TUHR10TKB	8.4
Kidney	TUHR14TKB	8.4
Kidney	TUHR4TKB	8.6
Kidney	VMRCRCW	8.1
Kidney	VMRCRCZ	8.6
Large intestine	C2BBE1	7.5
Large intestine	CCK81	7.9
Large intestine	CL11	8.4
Large intestine	CL14	8.7
Large intestine	CL34	8.1
Large intestine	CL40	8.7
Large intestine	COLO205	7.9
Large intestine	COLO320	8.7
Large intestine	COLO678	9.2
Large intestine	CW2	8.1
Large intestine	DLD1	7.8
Large intestine	GP2D	8.1
Large intestine	HCC56	8.2
Large intestine	HCT116	7.7
Large intestine	HCT15	8.3
Large intestine	HS675T	8.1
Large intestine	HS698T	7.9
Large intestine	HT115	8.9
Large intestine	HT29	8.1
Large intestine	HT55	8.1
Large intestine	KM12	7.3
Large intestine	LOVO	8.1
Large intestine	LS1034	7.9
Large intestine	LS123	8.1
Large intestine	LS180	7.7
Large intestine	LS411N	7.9
Large intestine	LS513	8.2
Large intestine	MDST8	8.6
Large intestine	NCIH508	8.4
Large intestine	NCIH716	7.7
Large intestine	NCIH747	7.8
Large intestine	OUMS23	7.5
Large intestine	RCM1	8.1
Large intestine	RKO	7.8
Large intestine	SKCO1	8.2
Large intestine	SNU1040	8.2
Large intestine	SNU1197	8.1
Large intestine	SNU175	8.4
Large intestine	SNU283	8.7
Large intestine	SNU407	8
Large intestine	SNU503	8.4
Large intestine	SNU61	8.4
Large intestine	SNU81	8.9
Large intestine	SNUC1	8.4
Large intestine	SNUC2A	7.7
Large intestine	SNUC4	7.5
Large intestine	SNUC5	7.6
Large intestine	SW1116	8.5
Large intestine	SW1417	7.8
Large intestine	SW1463	8.1
Large intestine	SW403	8.3
Large intestine	SW480	7.7
Large intestine	SW48	8.2
Large intestine	SW620	8.6
Large intestine	SW837	8.4
Large intestine	SW948	8.1
Large intestine	T84	8.1
Liver	ALEXANDERCELLS	7.5
Liver	C3A	7.4
Liver	HEP3B217	7.6
Liver	HEPG2	6.4
Liver	HLE	8.8
Liver	HLF	8
Liver	HUH1	8
Liver	HUH6	7.6
Liver	HUH7	7.1
Liver	JHH1	8
Liver	JHH2	7.4
Liver	JHH4	8.7
Liver	JHH5	7.9
Liver	JHH6	8.1
Liver	JHH7	8.1
Liver	LI7	8.9
Liver	PLCPRF5	7.8
Liver	SKHEP1	8.7
Liver	SNU182	7.1
Liver	SNU387	7.9
Liver	SNU398	8.3
Liver	SNU423	7.9
Liver	SNU449	7.6
Liver	SNU475	7.8
Liver	SNU761	7.6
Liver	SNU878	8.6
Liver	SNU886	8.4
Lung	A549	8.1
Lung	ABC1	7.8
Lung	BEN	8.1
Lung	CAL12T	7.2
Lung	CALU1	8.4
Lung	CALU3	8.1
Lung	CALU6	8
Lung	CHAGOK1	7.4
Lung	COLO668	8.5
Lung	COLO699	8.3
Lung	CORL105	7.3
Lung	CORL23	8.3
Lung	CORL24	8.2
Lung	CORL279	9.1
Lung	CORL311	8.5
Lung	CORL47	8.9
Lung	CORL51	8.6
Lung	CORL88	8.8
Lung	CORL95	8.4
Lung	CPCN	8.3
Lung	DMS114	9
Lung	DMS153	8.5
Lung	DMS273	7.7
Lung	DMS454	8.4
Lung	DMS53	7.8
Lung	DMS79	7
Lung	DV90	7.8
Lung	EBC1	7.7
Lung	EPLC272H	7.5
Lung	HARA	8.1
Lung	HCC1171	8.4
Lung	HCC1195	8.8
Lung	HCC15	7.8
Lung	HCC2279	7.1
Lung	HCC2935	7.9
Lung	HCC33	8.1
Lung	HCC366	8.5
Lung	HCC4006	7.6
Lung	HCC44	7
Lung	HCC78	8.2
Lung	HCC827	8
Lung	HCC95	8.1
Lung	HLC1	8.6
Lung	HLFA	7.8
Lung	HS229T	7.7
Lung	HS618T	7.6
Lung	IALM	7.8
Lung	KNS62	7.1
Lung	LC1F	8.3
Lung	LC1SQSF	8.2
Lung	LCLC103H	8.8
Lung	LCLC97TM1	8.7
Lung	LK2	8.2
Lung	LOUNH91	8.2
Lung	LU65	7.3
Lung	LU99	7.9
Lung	LUDLU1	8.4
Lung	LXF289	8
Lung	MORCPR	8.7
Lung	NCIH1048	8.9
Lung	NCIH1092	8.3
Lung	NCIH1105	8.2
Lung	NCIH1155	7.6
Lung	NCIH1184	8.6
Lung	NCIH1299	8.5
Lung	NCIH1339	7.9
Lung	NCIH1341	7.7
Lung	NCIH1355	7.8
Lung	NCIH1373	8.4
Lung	NCIH1385	9.2
Lung	NCIH1395	7.2
Lung	NCIH1435	9.1
Lung	NCIH1436	8.5
Lung	NCIH1437	8.6
Lung	NCIH146	8.7
Lung	NCIH1563	7
Lung	NCIH1568	7.7
Lung	NCIH1573	8.5
Lung	NCIH1581	8.6
Lung	NCIH1618	8.6
Lung	NCIH1623	8.8
Lung	NCIH1648	8.2
Lung	NCIH1650	7.8
Lung	NCIH1651	8.1
Lung	NCIH1666	7.9
Lung	NCIH1693	7.2
Lung	NCIH1694	8.1
Lung	NCIH1703	8.2
Lung	NCIH1734	8.4
Lung	NCIH1755	8
Lung	NCIH1781	7.8
Lung	NCIH1792	7
Lung	NCIH1793	7.8
Lung	NCIH1836	9
Lung	NCIH1838	7.6
Lung	NCIH1869	7.8
Lung	NCIH1876	9.4
Lung	NCIH1915	7.1
Lung	NCIH1930	8.9
Lung	NCIH1944	7.7
Lung	NCIH1963	8.4
Lung	NCIH196	7.8
Lung	NCIH1975	7.7
Lung	NCIH2009	8.1
Lung	NCIH2023	8
Lung	NCIH2029	8.4
Lung	NCIH2030	7.9
Lung	NCIH2066	8.2
Lung	NCIH2081	8.8
Lung	NCIH2085	8
Lung	NCIH2087	7.9
Lung	NCIH209	8.3
Lung	NCIH2106	7.3
Lung	NCIH2110	8.5
Lung	NCIH211	7.8
Lung	NCIH2122	7.5
Lung	NCIH2126	8.8
Lung	NCIH2141	8.9
Lung	NCIH2170	7.9
Lung	NCIH2171	7.6
Lung	NCIH2172	7.4
Lung	NCIH2196	8.7
Lung	NCIH2227	8.8
Lung	NCIH2228	7.9
Lung	NCIH226	7.9
Lung	NCIH2286	8.1
Lung	NCIH2291	7.7
Lung	NCIH2342	8.2
Lung	NCIH2347	7.8
Lung	NCIH23	8.5
Lung	NCIH2405	8.2
Lung	NCIH2444	7.8
Lung	NCIH292	7.8
Lung	NCIH322	7.1
Lung	NCIH3255	8.5
Lung	NCIH358	7.9
Lung	NCIH441	8.1
Lung	NCIH446	8.2
Lung	NCIH460	8
Lung	NCIH510	8.1
Lung	NCIH520	7.8
Lung	NCIH522	8.3
Lung	NCIH524	7.3
Lung	NCIH526	8.7
Lung	NCIH596	7.4
Lung	NCIH647	7.4
Lung	NCIH650	8.7
Lung	NCIH661	8
Lung	NCIH69	8.8
Lung	NCIH727	6.4
Lung	NCIH810	8.8
Lung	NCIH82	7.6
Lung	NCIH838	7.3
Lung	NCIH841	8.3
Lung	NCIH854	7.9
Lung	NCIH889	8.5
Lung	PC14	7.6
Lung	RERFLCAD1	7.9
Lung	RERFLCAD2	7.7
Lung	RERFLCAI	8
Lung	RERFLCKJ	8.3
Lung	RERFLCMS	8
Lung	RERFLCSQ1	7.8
Lung	SBC5	8.3
Lung	SCLC21H	8.6
Lung	SHP77	7.9
Lung	SKLU1	8.4
Lung	SKMES1	7.5
Lung	SQ1	8.4
Lung	SW1271	8
Lung	SW1573	8.7
Lung	SW900	7.3
Lung	VMRCLCD	9.7
Lung	VMRCLCP	8.5
Oesophagus	COLO680N	8.3
Oesophagus	ECGI10	7.4
Oesophagus	KYSE140	8.3
Oesophagus	KYSE150	8.3
Oesophagus	KYSE180	8
Oesophagus	KYSE270	7.6
Oesophagus	KYSE30	8.6
Oesophagus	KYSE410	8.5
Oesophagus	KYSE450	8.2
Oesophagus	KYSE510	8.3
Oesophagus	KYSE520	8.1
Oesophagus	KYSE70	7.7
Oesophagus	OE19	7.9
Oesophagus	OE33	7.1
Oesophagus	TE10	8.5
Oesophagus	TE11	7.9
Oesophagus	TE14	8.4
Oesophagus	TE15	7.9
Oesophagus	TE1	7.2
Oesophagus	TE4	8.3
Oesophagus	TE5	7.9
Oesophagus	TE6	8.2
Oesophagus	TE8	8
Oesophagus	TE9	7.7
Oesophagus	TT	8.3
Ovary	59M	7.8
Ovary	A2780	8
Ovary	CAOV3	7.6
Ovary	CAOV4	8.1
Ovary	COLO704	8
Ovary	COV318	7.9
Ovary	COV362	8.6
Ovary	COV434	8.4
Ovary	COV504	7.6
Ovary	COV644	8
Ovary	EFO21	8.3
Ovary	EFO27	7.8
Ovary	ES2	7.8
Ovary	FUOV1	7.7
Ovary	HEYA8	7.6
Ovary	HS571T	7.5
Ovary	IGROV1	7.5
Ovary	JHOC5	8.5
Ovary	JHOM1	8.2
Ovary	JHOM2B	8.3
Ovary	JHOS2	7.9
Ovary	JHOS4	8
Ovary	KURAMOCHI	8.1
Ovary	MCAS	7.3
Ovary	NIHOVCAR3	7.8
Ovary	OAW28	8.7
Ovary	OAW42	8.2
Ovary	OC314	8.4
Ovary	OC316	8
Ovary	ONCODG1	8.2
Ovary	OV56	7.2
Ovary	OV7	8
Ovary	OV90	8.7
Ovary	OVCAR4	8.3
Ovary	OVCAR8	8.4
Ovary	OVISE	7.4
Ovary	OVK18	8.5
Ovary	OVKATE	7.6
Ovary	OVMANA	8.1
Ovary	OVSAHO	8.8
Ovary	OVTOKO	7.2
Ovary	RMGI	6.7
Ovary	RMUGS	8.5
Ovary	SKOV3	7.4
Ovary	SNU119	8.2
Ovary	SNU840	8.1
Ovary	SNU8	8
Ovary	TOV112D	8.8
Ovary	TOV21G	7.9
Ovary	TYKNU	7.6
Pancreas	ASPC1	8.2
Pancreas	BXPC3	7.9
Pancreas	CAPAN1	8.5
Pancreas	CAPAN2	7.8
Pancreas	CFPAC1	8
Pancreas	DANG	7.6
Pancreas	HPAC	8.7
Pancreas	HPAFII	8.3
Pancreas	HS766T	7.4
Pancreas	HUPT3	8.2
Pancreas	HUPT4	8
Pancreas	KCIMOH1	8.1
Pancreas	KLM1	9.3
Pancreas	KP2	7.5
Pancreas	KP3	8
Pancreas	KP4	8.1
Pancreas	L33	7.9
Pancreas	MIAPACA2	8
Pancreas	PANC0203	8.3
Pancreas	PANC0213	7.5
Pancreas	PANC0327	8.5
Pancreas	PANC0403	7.7
Pancreas	PANC0504	8
Pancreas	PANC0813	7.6
Pancreas	PANC1005	8
Pancreas	PANC1	8.3
Pancreas	PATU8902	8.3
Pancreas	PATU8988S	8.1
Pancreas	PATU8988T	8.3
Pancreas	PK1	8.3
Pancreas	PK45H	8
Pancreas	PK59	7.6
Pancreas	PL45	8
Pancreas	PSN1	8.3
Pancreas	QGP1	8.2
Pancreas	SNU213	7.7
Pancreas	SNU324	8.4
Pancreas	SNU410	8.4
Pancreas	SU8686	7.9
Pancreas	SUIT2	8.8
Pancreas	SW1990	7.5
Pancreas	T3M4	8.6
Pancreas	TCCPAN2	8.3
Pancreas	YAPC	8.2
Pleura	ACCMESO1	7.5
Pleura	DM3	8.2
Pleura	ISTMES1	7.5
Pleura	ISTMES2	8.3
Pleura	JL1	8.1
Pleura	MPP89	7.7
Pleura	MSTO211H	7.9
Pleura	NCIH2052	7.9
Pleura	NCIH2452	8
Pleura	NCIH28	8.1
Prostate	22RV1	8.2
Prostate	DU145	8
Prostate	LNCAPCLONEFGC	7.8
Prostate	MDAPCA2B	7.4
Prostate	NCIH660	9.4
Prostate	PC3	8
Prostate	VCAP	7.6
Salivary gland	A253	7.7
Salivary gland	YD15	8.1
Skin	A101D	8
Skin	A2058	8.6
Skin	A375	8.2
Skin	C32	7.6
Skin	CHL1	7.7
Skin	CJM	7.9
Skin	COLO679	7.3
Skin	COLO741	7.8
Skin	COLO783	8.3
Skin	COLO792	8.1
Skin	COLO800	7.8
Skin	COLO818	8.4
Skin	COLO829	7.6
Skin	COLO849	8.3
Skin	G361	7.3
Skin	GRM	8.8
Skin	HMCB	7.7
Skin	HS294T	8
Skin	HS600T	7.7
Skin	HS688AT	8
Skin	HS695T	7.6
Skin	HS839T	8.1
Skin	HS852T	8.1
Skin	HS895T	7.2
Skin	HS934T	7.7
Skin	HS936T	8
Skin	HS939T	8.2
Skin	HS940T	7.5
Skin	HS944T	7.6
Skin	HT144	8.3
Skin	IGR1	7.9
Skin	IGR37	7.8
Skin	IGR39	7.9
Skin	IPC298	7.2
Skin	K029AX	7.6
Skin	LOXIMVI	8.2
Skin	MALME3M	7.3
Skin	MDAMB435S	7.7
Skin	MELHO	7.8
Skin	MELJUSO	7.7
Skin	MEWO	7.8
Skin	RPMI7951	7.8
Skin	RVH421	7.8
Skin	SH4	7.8
Skin	SKMEL1	7.7
Skin	SKMEL24	7.8
Skin	SKMEL28	7.6
Skin	SKMEL2	7.5
Skin	SKMEL30	7.5
Skin	SKMEL31	8.4
Skin	SKMEL3	7.5
Skin	SKMEL5	7.9
Skin	UACC257	7.5
Skin	UACC62	8
Skin	WM115	8
Skin	WM1799	8.3
Skin	WM2664	8.3
Skin	WM793	7.4
Skin	WM88	7.7
Skin	WM983B	8
Small intestine	HUTU80	8.7
Soft tissue	A204	8.2
Soft tissue	G401	7.4
Soft tissue	G402	7.9
Soft tissue	GCT	8
Soft tissue	HS729	8.3
Soft tissue	HT1080	7.9
Soft tissue	KYM1	8.1
Soft tissue	MESSA	8
Soft tissue	RD	8.3
Soft tissue	RH30	9.2
Soft tissue	RH41	9
Soft tissue	RKN	7.3
Soft tissue	S117	7.9
Soft tissue	SJRH30	8.1
Soft tissue	SKLMS1	8.4
Soft tissue	SKUT1	8.6
Soft tissue	TE125T	7.4
Soft tissue	TE159T	8.4
Soft tissue	TE441T	8.6
Soft tissue	TE617T	8.2
Stomach	2313287	7.7
Stomach	AGS	7.1
Stomach	AZ521	8.3
Stomach	ECC10	8.5
Stomach	ECC12	8.7
Stomach	FU97	6.7
Stomach	GCIY	7.7
Stomach	GSS	8
Stomach	GSU	8.4
Stomach	HGC27	8.4
Stomach	HS746T	7.5
Stomach	HUG1N	8
Stomach	IM95	7.6
Stomach	KATOIII	7.4
Stomach	KE39	8.5
Stomach	LMSU	7.9
Stomach	MKN1	7.9
Stomach	MKN45	8.5
Stomach	MKN74	6.6
Stomach	MKN7	7.5
Stomach	NCCSTCK140	7.6
Stomach	NCIN87	8
Stomach	NUGC2	8.6
Stomach	NUGC3	7.9
Stomach	NUGC4	8.4
Stomach	OCUM1	7.8
Stomach	RERFGC1B	8.3
Stomach	SH10TC	7.9
Stomach	SNU16	8.2
Stomach	SNU1	8.1
Stomach	SNU216	8.3
Stomach	SNU520	8
Stomach	SNU5	7.6
Stomach	SNU601	7.9
Stomach	SNU620	8
Stomach	SNU668	8.1
Stomach	SNU719	8.9
Stomach	TGBC11TKB	8.9
Thyroid	8305C	7.9
Thyroid	8505C	8.1
Thyroid	BCPAP	9
Thyroid	BHT101	8.1
Thyroid	CAL62	8.5
Thyroid	CGTHW1	7.8
Thyroid	FTC133	7.6
Thyroid	FTC238	8
Thyroid	ML1	8
Thyroid	SW579	7.7
Thyroid	TT2609C02	8.7
Thyroid	TT	9.3
Upper aerodigestive tract	BHY	8.1
Upper aerodigestive tract	BICR16	7.6
Upper aerodigestive tract	BICR18	7.9
Upper aerodigestive tract	BICR22	7.7
Upper aerodigestive tract	BICR31	8.2
Upper aerodigestive tract	BICR56	8.2
Upper aerodigestive tract	BICR6	8.1
Upper aerodigestive tract	CAL27	7.9
Upper aerodigestive tract	CAL33	8.5
Upper aerodigestive tract	DETROIT562	7.5
Upper aerodigestive tract	FADU	7.5
Upper aerodigestive tract	HS840T	7.9
Upper aerodigestive tract	HSC2	7.4
Upper aerodigestive tract	HSC3	7.3
Upper aerodigestive tract	HSC4	7.7
Upper aerodigestive tract	PECAPJ15	8
Upper aerodigestive tract	PECAPJ34CLONEC12	7.6
Upper aerodigestive tract	PECAPJ41CLONED2	7.3
Upper aerodigestive tract	PECAPJ49	7.5
Upper aerodigestive tract	SCC15	7.8
Upper aerodigestive tract	SCC25	7.5
Upper aerodigestive tract	SCC4	7.4
Upper aerodigestive tract	SCC9	8.1
Upper aerodigestive tract	SNU1076	8.2
Upper aerodigestive tract	SNU1214	7.8
Upper aerodigestive tract	SNU46	7.5
Upper aerodigestive tract	SNU899	8.4
Upper aerodigestive tract	YD10B	8.2
Upper aerodigestive tract	YD38	7.6
Upper aerodigestive tract	YD8	7.9
Urinary tract	5637	8.4
Urinary tract	639V	8.6
Urinary tract	647V	8.1
Urinary tract	BC3C	7.8
Urinary tract	BFTC905	7.9
Urinary tract	CAL29	8.3
Urinary tract	HS172T	7.6
Urinary tract	HT1197	7.6
Urinary tract	HT1376	7.9
Urinary tract	J82	7.9
Urinary tract	JMSU1	9
Urinary tract	KMBC2	7.6
Urinary tract	KU1919	8.2
Urinary tract	RT11284	8.3
Urinary tract	RT112	8.3
Urinary tract	RT4	8
Urinary tract	SCABER	7.4
Urinary tract	SW1710	8.5
Urinary tract	SW780	8.9
Urinary tract	T24	8
Urinary tract	TCCSUP	7.3
Urinary tract	UMUC1	8.5
Urinary tract	UMUC3	8.6
Urinary tract	VMCUB1	8.1

> The Human Protein Atlas (HPA)

[ TOP ]

Tissue	Expression Level (TPM)
Adipose tissue	36.8
Adrenal gland	35.6
Appendix	32.7
Bone marrow	14.6
Breast	26.8
Cerebral cortex	77
Cervix, uterine	43.1
Colon	22.6
Duodenum	28.5
Endometrium	58.8
Epididymis	22.1
Esophagus	25
Fallopian tube	49.4
Gallbladder	36.5
Heart muscle	17.3
Kidney	23.7
Liver	8.9
Lung	40.9
Lymph node	34.3
Ovary	56.2
Pancreas	5.8
Parathyroid gland	66.4
Placenta	35.9
Prostate	43.4
Rectum	25.3
Salivary gland	15
Seminal vesicle	44.9
Skeletal muscle	16.1
Skin	41
Small intestine	32
Smooth muscle	41.4
Spleen	44
Stomach	25
Testis	42.7
Thyroid gland	52
Tonsil	26.5
Urinary bladder	27.4

> Text Mining based Expression [ TOP ]
There is no record.

Summary
Symbol	SMARCC2
Name	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
Aliases	BAF170; CRACC2; BRG1-associated factor 170; SWI/SNF complex 170 kDa subunit; SWI/SNF-related matrix-associat ......
Location	12q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Somatic copy number alteration in primary tomur tissue

> The Cancer Genome Atlas (TCGA)

[ TOP ]

Correlation between expression and SCNA as well as percentage of patients in different status.

Cancer	Full Name	# Sample	R	P	% Loss	% Neutral	% Gain	Status
BLCA	Bladder urothelial carcinoma	404	0.542	2.91e-32	16.1	61.6	22.3	Neutral
BRCA	Breast invasive carcinoma	1075	0.526	2.19e-77	13.6	65.5	20.9	Neutral
CESC	Cervical and endocervical cancers	292	0.49	4.57e-19	5.5	76.7	17.8	Neutral
COAD	Colon adenocarcinoma	449	0.356	7.46e-15	10	68.8	21.2	Neutral
ESCA	Esophageal carcinoma	183	0.516	7.48e-14	19.7	56.8	23.5	Neutral
GBM	Glioblastoma multiforme	147	0.315	0.000104	10.9	76.9	12.2	Neutral
HNSC	Head and Neck squamous cell carcinoma	514	0.466	4.02e-29	8.8	74.5	16.7	Neutral
KIRC	Kidney renal clear cell carcinoma	525	0.274	1.62e-10	0.8	76.4	22.9	Neutral
KIRP	Kidney renal papillary cell carcinoma	288	0.52	2.49e-21	0	60.8	39.2	Gain
LAML	Acute Myeloid Leukemia	166	0.122	0.118	0.6	99.4	0	Neutral
LGG	Brain Lower Grade Glioma	513	0.386	1.03e-19	12.7	84.6	2.7	Neutral
LIHC	Liver hepatocellular carcinoma	364	0.382	4.04e-14	9.6	75.5	14.8	Neutral
LUAD	Lung adenocarcinoma	512	0.562	5.15e-44	16.4	52.3	31.2	Neutral
LUSC	Lung squamous cell carcinoma	498	0.402	8.88e-21	11.2	57.6	31.1	Neutral
OV	Ovarian serous cystadenocarcinoma	300	0.659	9.75e-39	13.7	46.7	39.7	Gain
PAAD	Pancreatic adenocarcinoma	177	0.561	4.3e-16	13.6	70.1	16.4	Neutral
PCPG	Pheochromocytoma and Paraganglioma	162	0.34	9.88e-06	0	91.4	8.6	Neutral
PRAD	Prostate adenocarcinoma	491	0.3	1.18e-11	4.5	90.4	5.1	Neutral
READ	Rectum adenocarcinoma	164	0.353	3.46e-06	12.2	73.8	14	Neutral
SARC	Sarcoma	255	0.496	2.95e-17	26.7	58.4	14.9	Neutral
SKCM	Skin Cutaneous Melanoma	367	0.469	1.76e-21	19.9	67.6	12.5	Neutral
STAD	Stomach adenocarcinoma	413	0.411	2.93e-18	9.7	67.3	23	Neutral
TGCT	Testicular Germ Cell Tumors	150	0.275	0.000649	0	37.3	62.7	Gain
THCA	Thyroid carcinoma	497	0.114	0.0109	0	97	3	Neutral
THYM	Thymoma	119	0.296	0.0011	5.9	90.8	3.4	Neutral
UCEC	Uterine Corpus Endometrial Carcinoma	537	0.534	5.42e-41	4.8	76.9	18.2	Neutral

Summary
Symbol	SMARCC2
Name	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
Aliases	BAF170; CRACC2; BRG1-associated factor 170; SWI/SNF complex 170 kDa subunit; SWI/SNF-related matrix-associat ......
Location	12q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Methylation level in the promoter region of CR

> Methylation level in the promoter region of CR

[ TOP ]

Correlation between expression and methylation as well as differential methylation analysis.

Cancer	Full Name	R	P	# N	# T	Delta beta (T vs N)	P value (T vs N)	Status
BLCA	Bladder urothelial carcinoma	-0.217	6.79e-06	17	408	0.006	0.467	NS/NA
BRCA	Breast invasive carcinoma	-0.173	3.23e-07	83	785	0.001	0.178	NS/NA
CESC	Cervical and endocervical cancers	-0.162	0.0043	3	306	NA	NA	NS/NA
COAD	Colon adenocarcinoma	-0.228	4.51e-05	19	297	0.003	0.116	NS/NA
ESCA	Esophageal carcinoma	-0.146	0.0424	9	185	NA	NA	NS/NA
GBM	Glioblastoma multiforme	-0.196	0.118	1	64	NA	NA	NS/NA
HNSC	Head and Neck squamous cell carcinoma	-0.11	0.0105	20	522	0.001	0.413	NS/NA
KIRC	Kidney renal clear cell carcinoma	-0.068	0.207	24	319	0	0.451	NS/NA
KIRP	Kidney renal papillary cell carcinoma	-0.25	1.3e-05	23	275	-0.01	0.384	NS/NA
LAML	Acute Myeloid Leukemia	-0.073	0.344	0	170	NA	NA	NS/NA
LGG	Brain Lower Grade Glioma	-0.045	0.296	0	530	NA	NA	NS/NA
LIHC	Liver hepatocellular carcinoma	-0.089	0.0695	41	373	-0.003	0.781	NS/NA
LUAD	Lung adenocarcinoma	-0.055	0.232	21	456	0.011	0.371	NS/NA
LUSC	Lung squamous cell carcinoma	-0.277	4.74e-08	8	370	NA	NA	NS/NA
OV	Ovarian serous cystadenocarcinoma	-0.433	0.25	0	9	NA	NA	NS/NA
PAAD	Pancreatic adenocarcinoma	-0.244	0.000917	4	179	NA	NA	NS/NA
PCPG	Pheochromocytoma and Paraganglioma	-0.085	0.246	3	184	NA	NA	NS/NA
PRAD	Prostate adenocarcinoma	-0.008	0.851	35	498	-0.006	0.271	NS/NA
READ	Rectum adenocarcinoma	-0.317	0.0013	2	99	NA	NA	NS/NA
SARC	Sarcoma	-0.15	0.0147	0	263	NA	NA	NS/NA
SKCM	Skin Cutaneous Melanoma	-0.143	0.00188	1	471	NA	NA	NS/NA
STAD	Stomach adenocarcinoma	-0.179	0.00052	0	372	NA	NA	NS/NA
TGCT	Testicular Germ Cell Tumors	-0.115	0.152	0	156	NA	NA	NS/NA
THCA	Thyroid carcinoma	-0.076	0.0739	50	509	-0.002	0.318	NS/NA
THYM	Thymoma	-0.265	0.0033	2	120	NA	NA	NS/NA
UCEC	Uterine Corpus Endometrial Carcinoma	-0.256	2.43e-08	34	431	-0.01	0.0779	NS/NA

Summary
Symbol	SMARCC2
Name	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
Aliases	BAF170; CRACC2; BRG1-associated factor 170; SWI/SNF complex 170 kDa subunit; SWI/SNF-related matrix-associat ......
Location	12q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Primary tumor tissue from TCGA > Normal tumor tissue from HPA

>The Cancer Genome Atlas (TCGA) [ TOP ]
There is no record.

> The Human Protein Atlas (HPA)

[ TOP ]

Tissue	Level	Level Name
Adrenal gland	3	High
Appendix	3	High
Bone marrow	3	High
Breast	3	High
Bronchus	3	High
Caudate	3	High
Cerebellum	3	High
Cerebral cortex	3	High
Cervix, uterine	3	High
Colon	3	High
Duodenum	3	High
Endometrium	3	High
Epididymis	3	High
Esophagus	3	High
Fallopian tube	3	High
Gallbladder	3	High
Heart muscle	3	High
Hippocampus	3	High
Kidney	3	High
Liver	2	Medium
Lung	3	High
Lymph node	3	High
Nasopharynx	3	High
Oral mucosa	3	High
Ovary	2	Medium
Pancreas	3	High
Parathyroid gland	3	High
Placenta	3	High
Prostate	3	High
Rectum	3	High
Salivary gland	3	High
Seminal vesicle	3	High
Skeletal muscle	2	Medium
Skin	3	High
Small intestine	3	High
Smooth muscle	2	Medium
Soft tissue	2	Medium
Spleen	3	High
Stomach	3	High
Testis	3	High
Thyroid gland	3	High
Tonsil	3	High
Urinary bladder	3	High
Vagina	2	Medium

Summary
Symbol	SMARCC2
Name	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
Aliases	BAF170; CRACC2; BRG1-associated factor 170; SWI/SNF complex 170 kDa subunit; SWI/SNF-related matrix-associat ......
Location	12q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Association between expresson and subtype > Overall survival analysis based on expression > Association between expresson and stage > Association between expresson and grade

> Subtype

[ TOP ]

Association between expresson and subtype.

Cancer	Full Name	# Patients	P Value (Kruskal-Wallis)	Association	Source
BLCA	Bladder urothelial carcinoma	128	0.349	NS	24476821
BRCA	Breast invasive carcinoma	521	1.34e-23	Significant	23000897
COAD	Colon adenocarcinoma	149	0.0209	Significant	22810696
GBM	Glioblastoma multiforme	157	1.67e-05	Significant	26824661
HNSC	Head and Neck squamous cell carcinoma	279	1.16e-08	Significant	25631445
KIRP	Kidney renal papillary cell carcinoma	161	0.000485	Significant	26536169
LGG	Brain Lower Grade Glioma	513	2.16e-30	Significant	26824661
LUAD	Lung adenocarcinoma	230	0.00865	Significant	25079552
LUSC	Lung squamous cell carcinoma	178	0.00037	Significant	22960745
OV	Ovarian serous cystadenocarcinoma	287	0.00105	Significant	21720365
PRAD	Prostate adenocarcinoma	333	0.00159	Significant	26544944
READ	Rectum adenocarcinoma	67	0.281	NS	22810696
SKCM	Skin Cutaneous Melanoma	315	0.365	NS	26091043
STAD	Stomach adenocarcinoma	277	9.61e-05	Significant	25079317
THCA	Thyroid carcinoma	391	1.43e-16	Significant	25417114
UCEC	Uterine Corpus Endometrial Carcinoma	232	0.0524	NS	23636398

> Overall survival

[ TOP ]

Overall survival analysis based on expression.

Cancer	Full Name	# Patients	Hazard Ratio	P Value (Log Rank Test)	Association
BLCA	Bladder urothelial carcinoma	405	0.792	0.288	NS
BRCA	Breast invasive carcinoma	1079	1.308	0.219	NS
CESC	Cervical and endocervical cancers	291	0.871	0.697	NS
COAD	Colon adenocarcinoma	439	0.987	0.968	NS
ESCA	Esophageal carcinoma	184	1.422	0.284	NS
GBM	Glioblastoma multiforme	158	0.941	0.83	NS
HNSC	Head and Neck squamous cell carcinoma	518	0.861	0.432	NS
KIRC	Kidney renal clear cell carcinoma	531	1.775	0.00509	Shorter
KIRP	Kidney renal papillary cell carcinoma	287	0.871	0.759	NS
LAML	Acute Myeloid Leukemia	149	1.199	0.545	NS
LGG	Brain Lower Grade Glioma	511	0.179	1.15e-10	Longer
LIHC	Liver hepatocellular carcinoma	365	1.287	0.317	NS
LUAD	Lung adenocarcinoma	502	0.904	0.624	NS
LUSC	Lung squamous cell carcinoma	494	1.001	0.994	NS
OV	Ovarian serous cystadenocarcinoma	303	1.206	0.38	NS
PAAD	Pancreatic adenocarcinoma	177	0.767	0.366	NS
PCPG	Pheochromocytoma and Paraganglioma	179	0	0.323	NS
PRAD	Prostate adenocarcinoma	497	2.158	0.52	NS
READ	Rectum adenocarcinoma	159	0.773	0.707	NS
SARC	Sarcoma	259	0.886	0.672	NS
SKCM	Skin Cutaneous Melanoma	459	1.177	0.396	NS
STAD	Stomach adenocarcinoma	388	0.705	0.132	NS
TGCT	Testicular Germ Cell Tumors	134	1.758	0.697	NS
THCA	Thyroid carcinoma	500	0.77	0.713	NS
THYM	Thymoma	119	0.464	0.37	NS
UCEC	Uterine Corpus Endometrial Carcinoma	543	1.048	0.871	NS

> Stage

[ TOP ]

Association between expresson and stage.

Cancer	Full Name	# Patients	R Value (Spearman)	P Value (Spearman)	Association
BLCA	Bladder urothelial carcinoma	406	-0.109	0.0276	Lower
BRCA	Breast invasive carcinoma	1071	0.028	0.363	NS
CESC	Cervical and endocervical cancers	167	0.126	0.105	NS
COAD	Colon adenocarcinoma	445	0	0.999	NS
ESCA	Esophageal carcinoma	162	-0.019	0.807	NS
HNSC	Head and Neck squamous cell carcinoma	448	-0.031	0.51	NS
KIRC	Kidney renal clear cell carcinoma	531	0.105	0.0157	Higher
KIRP	Kidney renal papillary cell carcinoma	260	-0.043	0.492	NS
LIHC	Liver hepatocellular carcinoma	347	0.093	0.0834	NS
LUAD	Lung adenocarcinoma	507	0.065	0.144	NS
LUSC	Lung squamous cell carcinoma	497	0.06	0.183	NS
OV	Ovarian serous cystadenocarcinoma	302	-0.052	0.371	NS
PAAD	Pancreatic adenocarcinoma	176	-0.141	0.0618	NS
READ	Rectum adenocarcinoma	156	0.029	0.72	NS
SKCM	Skin Cutaneous Melanoma	410	-0.025	0.618	NS
STAD	Stomach adenocarcinoma	392	0.032	0.533	NS
TGCT	Testicular Germ Cell Tumors	81	0.173	0.122	NS
THCA	Thyroid carcinoma	499	0.075	0.093	NS
UCEC	Uterine Corpus Endometrial Carcinoma	501	0.032	0.481	NS

> Grade

[ TOP ]

Association between expresson and grade.

Cancer	Full Name	# Patients	R Value (Spearman)	P Value (Spearman)	Association
CESC	Cervical and endocervical cancers	272	-0.081	0.183	NS
HNSC	Head and Neck squamous cell carcinoma	498	0.151	0.000723	Higher
KIRC	Kidney renal clear cell carcinoma	525	0.011	0.808	NS
LGG	Brain Lower Grade Glioma	514	-0.16	0.000263	Lower
LIHC	Liver hepatocellular carcinoma	366	0.139	0.00797	Higher
OV	Ovarian serous cystadenocarcinoma	296	0.143	0.014	Higher
PAAD	Pancreatic adenocarcinoma	176	-0.08	0.289	NS
STAD	Stomach adenocarcinoma	406	0.003	0.95	NS
UCEC	Uterine Corpus Endometrial Carcinoma	534	0.047	0.275	NS

Summary
Symbol	SMARCC2
Name	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
Aliases	BAF170; CRACC2; BRG1-associated factor 170; SWI/SNF complex 170 kDa subunit; SWI/SNF-related matrix-associat ......
Location	12q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Targets inferred by reverse engineering method > Targets identified by ChIP-seq data

> Targets inferred by reverse engineering method [ TOP ]

> Targets identified by ChIP-seq data [ TOP ]

Summary
Symbol	SMARCC2
Name	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
Aliases	BAF170; CRACC2; BRG1-associated factor 170; SWI/SNF complex 170 kDa subunit; SWI/SNF-related matrix-associat ......
Location	12q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Drugs from DrugBank database

> Drugs from DrugBank database [ TOP ]
There is no record for SMARCC2.

Summary
Symbol	SMARCC2
Name	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
Aliases	BAF170; CRACC2; BRG1-associated factor 170; SWI/SNF complex 170 kDa subunit; SWI/SNF-related matrix-associat ......
Location	12q13.2
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Protein-Protein Interaction Network > miRNA Regulatory Relationship > Interactions from Text Mining

> Protein-Protein Interaction Network [ TOP ]

> miRNA Regulatory Relationship [ TOP ]

> Interactions from Text Mining [ TOP ]
There is no record for SMARCC2.