Summary | |
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Symbol | ARID1A |
Name | AT-rich interaction domain 1A |
Aliases | B120; C10rf4; BAF250; BAF250a; C1orf4; SMARCF1; SWI/SNF related, matrix associated, actin dependent regulato ...... |
Location | 1p36.11 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Cancer Gene Databases | ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes) |
Content |
> Domain, Function and Classification > Gene Ontology > KEGG and Reactome Pathway |
Domain |
PF01388 ARID/BRIGHT DNA binding domain PF12031 SWI/SNF-like complex subunit BAF250/Osa |
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Function |
Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Binds DNA non-specifically. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity). |
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Classification |
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Biological Process |
GO:0001654 eye development GO:0001838 embryonic epithelial tube formation GO:0001841 neural tube formation GO:0001843 neural tube closure GO:0001890 placenta development GO:0002072 optic cup morphogenesis involved in camera-type eye development GO:0003205 cardiac chamber development GO:0003408 optic cup formation involved in camera-type eye development GO:0006333 chromatin assembly or disassembly GO:0006337 nucleosome disassembly GO:0006338 chromatin remodeling GO:0006342 chromatin silencing GO:0006344 maintenance of chromatin silencing GO:0007423 sensory organ development GO:0007507 heart development GO:0009755 hormone-mediated signaling pathway GO:0014020 primary neural tube formation GO:0014706 striated muscle tissue development GO:0016331 morphogenesis of embryonic epithelium GO:0016458 gene silencing GO:0021915 neural tube development GO:0030518 intracellular steroid hormone receptor signaling pathway GO:0030520 intracellular estrogen receptor signaling pathway GO:0030521 androgen receptor signaling pathway GO:0030522 intracellular receptor signaling pathway GO:0030900 forebrain development GO:0031076 embryonic camera-type eye development GO:0031498 chromatin disassembly GO:0031958 corticosteroid receptor signaling pathway GO:0032984 macromolecular complex disassembly GO:0032986 protein-DNA complex disassembly GO:0034728 nucleosome organization GO:0035051 cardiocyte differentiation GO:0035148 tube formation GO:0035239 tube morphogenesis GO:0040029 regulation of gene expression, epigenetic GO:0042692 muscle cell differentiation GO:0042766 nucleosome mobilization GO:0042921 glucocorticoid receptor signaling pathway GO:0043010 camera-type eye development GO:0043044 ATP-dependent chromatin remodeling GO:0043241 protein complex disassembly GO:0043401 steroid hormone mediated signaling pathway GO:0045814 negative regulation of gene expression, epigenetic GO:0045815 positive regulation of gene expression, epigenetic GO:0048048 embryonic eye morphogenesis GO:0048096 chromatin-mediated maintenance of transcription GO:0048545 response to steroid hormone GO:0048562 embryonic organ morphogenesis GO:0048568 embryonic organ development GO:0048592 eye morphogenesis GO:0048593 camera-type eye morphogenesis GO:0048596 embryonic camera-type eye morphogenesis GO:0048608 reproductive structure development GO:0048738 cardiac muscle tissue development GO:0051146 striated muscle cell differentiation GO:0055007 cardiac muscle cell differentiation GO:0060537 muscle tissue development GO:0060562 epithelial tube morphogenesis GO:0060606 tube closure GO:0060674 placenta blood vessel development GO:0060900 embryonic camera-type eye formation GO:0061458 reproductive system development GO:0071383 cellular response to steroid hormone stimulus GO:0071396 cellular response to lipid GO:0071407 cellular response to organic cyclic compound GO:0071824 protein-DNA complex subunit organization GO:0072175 epithelial tube formation GO:0090596 sensory organ morphogenesis GO:1901998 toxin transport |
Molecular Function |
GO:0003682 chromatin binding GO:0003713 transcription coactivator activity GO:0016922 ligand-dependent nuclear receptor binding GO:0031491 nucleosome binding |
Cellular Component |
GO:0000785 chromatin GO:0000790 nuclear chromatin GO:0016514 SWI/SNF complex GO:0044454 nuclear chromosome part GO:0070603 SWI/SNF superfamily-type complex GO:0071564 npBAF complex GO:0071565 nBAF complex GO:0090544 BAF-type complex |
KEGG | - |
Reactome |
R-HSA-3247509: Chromatin modifying enzymes R-HSA-4839726: Chromatin organization R-HSA-3214858: RMTs methylate histone arginines |
Summary | |
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Symbol | ARID1A |
Name | AT-rich interaction domain 1A |
Aliases | B120; C10rf4; BAF250; BAF250a; C1orf4; SMARCF1; SWI/SNF related, matrix associated, actin dependent regulato ...... |
Location | 1p36.11 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Cancer Gene Databases | ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes) |
Content |
> Mutation landscape in primary tumor tissue from TCGA > Mutation landscape in cancer cell line from CCLE > All mutations from COSMIC database V81 > Variations from text mining |
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Summary | |
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Symbol | ARID1A |
Name | AT-rich interaction domain 1A |
Aliases | B120; C10rf4; BAF250; BAF250a; C1orf4; SMARCF1; SWI/SNF related, matrix associated, actin dependent regulato ...... |
Location | 1p36.11 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Cancer Gene Databases | ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes) |
Content |
> Post-translational modification (PTM) |
Filter By:
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Summary | |
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Symbol | ARID1A |
Name | AT-rich interaction domain 1A |
Aliases | B120; C10rf4; BAF250; BAF250a; C1orf4; SMARCF1; SWI/SNF related, matrix associated, actin dependent regulato ...... |
Location | 1p36.11 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Cancer Gene Databases | ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes) |
Content |
> Expression analysis in primary tumor tissue from TCGA > Expression level in cancer cell line from CCLE > Expression level in human normal tissue from HPA > Text mining based expression change |
Differential expression analysis for cancers with more than 10 normal samples
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Summary | |
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Symbol | ARID1A |
Name | AT-rich interaction domain 1A |
Aliases | B120; C10rf4; BAF250; BAF250a; C1orf4; SMARCF1; SWI/SNF related, matrix associated, actin dependent regulato ...... |
Location | 1p36.11 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Cancer Gene Databases | ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes) |
Content |
> Somatic copy number alteration in primary tomur tissue |
Correlation between expression and SCNA as well as percentage of patients in different status.
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Summary | |
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Symbol | ARID1A |
Name | AT-rich interaction domain 1A |
Aliases | B120; C10rf4; BAF250; BAF250a; C1orf4; SMARCF1; SWI/SNF related, matrix associated, actin dependent regulato ...... |
Location | 1p36.11 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Cancer Gene Databases | ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes) |
Content |
> Methylation level in the promoter region of CR |
Correlation between expression and methylation as well as differential methylation analysis.
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Summary | |
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Symbol | ARID1A |
Name | AT-rich interaction domain 1A |
Aliases | B120; C10rf4; BAF250; BAF250a; C1orf4; SMARCF1; SWI/SNF related, matrix associated, actin dependent regulato ...... |
Location | 1p36.11 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Cancer Gene Databases | ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes) |
Content |
> Primary tumor tissue from TCGA > Normal tumor tissue from HPA |
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Summary | |
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Symbol | ARID1A |
Name | AT-rich interaction domain 1A |
Aliases | B120; C10rf4; BAF250; BAF250a; C1orf4; SMARCF1; SWI/SNF related, matrix associated, actin dependent regulato ...... |
Location | 1p36.11 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Cancer Gene Databases | ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes) |
Content |
> Association between expresson and subtype > Overall survival analysis based on expression > Association between expresson and stage > Association between expresson and grade |
Association between expresson and subtype.
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Overall survival analysis based on expression.
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Association between expresson and stage.
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Association between expresson and grade.
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Summary | |
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Symbol | ARID1A |
Name | AT-rich interaction domain 1A |
Aliases | B120; C10rf4; BAF250; BAF250a; C1orf4; SMARCF1; SWI/SNF related, matrix associated, actin dependent regulato ...... |
Location | 1p36.11 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Cancer Gene Databases | ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes) |
Content |
> Targets inferred by reverse engineering method > Targets identified by ChIP-seq data |
Summary | |
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Symbol | ARID1A |
Name | AT-rich interaction domain 1A |
Aliases | B120; C10rf4; BAF250; BAF250a; C1orf4; SMARCF1; SWI/SNF related, matrix associated, actin dependent regulato ...... |
Location | 1p36.11 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Cancer Gene Databases | ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes) |
Content |
> Drugs from DrugBank database |
There is no record for ARID1A. |
Summary | |
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Symbol | ARID1A |
Name | AT-rich interaction domain 1A |
Aliases | B120; C10rf4; BAF250; BAF250a; C1orf4; SMARCF1; SWI/SNF related, matrix associated, actin dependent regulato ...... |
Location | 1p36.11 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Cancer Gene Databases | ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes) |
Content |
> Protein-Protein Interaction Network > miRNA Regulatory Relationship > Interactions from Text Mining |
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