CR2Cancer

Summary
Symbol	MBD1
Name	methyl-CpG binding domain protein 1
Aliases	CXXC3; RFT; CXXC-type zinc finger protein 3; methyl-CpG binding domain protein 1 isoform PCM1; protein conta ......
Location	18q21.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Domain, Function and Classification > Gene Ontology > KEGG and Reactome Pathway

> Domain, Function and Classification

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Domain

PF01429 Methyl-CpG binding domain
PF02008 CXXC zinc finger domain

Function

Transcriptional repressor that binds CpG islands in promoters where the DNA is methylated at position 5 of cytosine within CpG dinucleotides. Binding is abolished by the presence of 7-mG that is produced by DNA damage by methylmethanesulfonate (MMS). Acts as transcriptional repressor and plays a role in gene silencing by recruiting AFT7IP, which in turn recruits factors such as the histone methyltransferase SETDB1. Probably forms a complex with SETDB1 and ATF7IP that represses transcription and couples DNA methylation and histone 'Lys-9' trimethylation. Isoform 1 and isoform 2 can also repress transcription from unmethylated promoters.

Classification

Class	Modification	Substrate	Product	PubMed
Histone modification write cofactor	Histone methylation	mCG, DNA motif	#	15327775

> Gene Ontology [ TOP ]
Biological Process	GO:0006304 DNA modification GO:0006305 DNA alkylation GO:0006306 DNA methylation GO:0006342 chromatin silencing GO:0006346 methylation-dependent chromatin silencing GO:0007507 heart development GO:0007568 aging GO:0009991 response to extracellular stimulus GO:0010001 glial cell differentiation GO:0010721 negative regulation of cell development GO:0014013 regulation of gliogenesis GO:0014014 negative regulation of gliogenesis GO:0016458 gene silencing GO:0031667 response to nutrient levels GO:0032259 methylation GO:0032355 response to estradiol GO:0040029 regulation of gene expression, epigenetic GO:0042063 gliogenesis GO:0042220 response to cocaine GO:0043279 response to alkaloid GO:0043414 macromolecule methylation GO:0044030 regulation of DNA methylation GO:0044728 DNA methylation or demethylation GO:0045685 regulation of glial cell differentiation GO:0045686 negative regulation of glial cell differentiation GO:0045814 negative regulation of gene expression, epigenetic GO:0048708 astrocyte differentiation GO:0048710 regulation of astrocyte differentiation GO:0048712 negative regulation of astrocyte differentiation GO:0050768 negative regulation of neurogenesis GO:0051052 regulation of DNA metabolic process GO:0051961 negative regulation of nervous system development
Molecular Function	GO:0003682 chromatin binding GO:0008327 methyl-CpG binding GO:0010385 double-stranded methylated DNA binding
Cellular Component	GO:0000785 chromatin GO:0000790 nuclear chromatin GO:0016363 nuclear matrix GO:0016604 nuclear body GO:0016607 nuclear speck GO:0034399 nuclear periphery GO:0044454 nuclear chromosome part

> KEGG and Reactome Pathway [ TOP ]
KEGG	-
Reactome	-

Summary
Symbol	MBD1
Name	methyl-CpG binding domain protein 1
Aliases	CXXC3; RFT; CXXC-type zinc finger protein 3; methyl-CpG binding domain protein 1 isoform PCM1; protein conta ......
Location	18q21.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Mutation landscape in primary tumor tissue from TCGA > Mutation landscape in cancer cell line from CCLE > All mutations from COSMIC database V81 > Variations from text mining

> The Cancer Genome Atlas (TCGA) [ TOP ]

> Cancer Cell Line Encyclopedia (CCLE) [ TOP ]
There is no record.

> Catalogue of Somatic Mutations in Cancer (COSMIC)

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COSMIC ID	CDS change	AA change	Mutation Type	Anatomical Site
COSM988829	c.1556C>T	p.P519L	Substitution - Missense	Endometrium
COSM1388993	c.423_424delAG	p.D143fs*29	Deletion - Frameshift	Large_intestine
COSM211971	c.1216C>T	p.R406*	Substitution - Nonsense	Breast
COSM5942785	c.111-6C>T	p.?	Unknown	Skin
COSM1239411	c.336G>A	p.P112P	Substitution - coding silent	Oesophagus
COSM5039195	c.743G>T	p.R248L	Substitution - Missense	Liver
COSM5521173	c.1440G>T	p.L480L	Substitution - coding silent	Biliary_tract
COSM2879284	c.147G>T	p.L49L	Substitution - coding silent	Large_intestine
COSM5388199	c.1214G>A	p.R405H	Substitution - Missense	Skin
COSM5741260	c.765G>T	p.W255C	Substitution - Missense	Small_intestine
COSM473895	c.141T>G	p.V47V	Substitution - coding silent	Kidney
COSM266904	c.742C>T	p.R248C	Substitution - Missense	Large_intestine
COSM4072446	c.1268C>T	p.P423L	Substitution - Missense	Stomach
COSM6017026	c.1779G>A	p.R593R	Substitution - coding silent	Skin
COSM988843	c.65G>A	p.R22H	Substitution - Missense	Endometrium
COSM3378509	c.1443G>A	p.L481L	Substitution - coding silent	Pancreas
COSM4917612	c.226G>T	p.A76S	Substitution - Missense	Liver
COSM3378509	c.1443G>A	p.L481L	Substitution - coding silent	Pancreas
COSM3719167	c.265C>A	p.P89T	Substitution - Missense	Haematopoietic_and_lymphoid_tissue
COSM988845	c.64C>T	p.R22C	Substitution - Missense	Endometrium
COSM4700961	c.335C>T	p.P112L	Substitution - Missense	Large_intestine
COSM1388989	c.496C>T	p.R166W	Substitution - Missense	Large_intestine
COSM988845	c.64C>T	p.R22C	Substitution - Missense	Endometrium
COSM4072450	c.1036C>T	p.R346W	Substitution - Missense	Stomach
COSM5574739	c.156C>G	p.Y52*	Substitution - Nonsense	Haematopoietic_and_lymphoid_tissue
COSM1388986	c.928C>T	p.P310S	Substitution - Missense	Large_intestine
COSM709404	c.686G>T	p.R229L	Substitution - Missense	Endometrium
COSM3371073	c.382C>T	p.P128S	Substitution - Missense	Thyroid
COSM3362547	c.1506G>A	p.K502K	Substitution - coding silent	Kidney
COSM213488	c.302G>C	p.G101A	Substitution - Missense	Breast
COSM5683643	c.302G>T	p.G101V	Substitution - Missense	Soft_tissue
COSM5388195	c.1747C>T	p.R583C	Substitution - Missense	Skin
COSM4072461	c.475+2T>C	p.?	Unknown	Stomach
COSM3371073	c.382C>T	p.P128S	Substitution - Missense	Large_intestine
COSM1680361	c.1075A>G	p.K359E	Substitution - Missense	Large_intestine
COSM4754514	c.1106G>T	p.R369L	Substitution - Missense	Stomach
COSM709410	c.1614G>A	p.K538K	Substitution - coding silent	Lung
COSM988830	c.1123C>T	p.R375C	Substitution - Missense	Endometrium
COSM4951062	c.995G>A	p.R332H	Substitution - Missense	Liver
COSM5616940	c.663+8G>T	p.?	Unknown	Lung
COSM4630386	c.1040G>A	p.R347Q	Substitution - Missense	Small_intestine
COSM5447270	c.1203A>G	p.P401P	Substitution - coding silent	Large_intestine
COSM5190347	c.1006C>T	p.R336C	Substitution - Missense	Large_intestine
COSM5895036	c.1349C>T	p.P450L	Substitution - Missense	Skin
COSM5003101	c.19G>A	p.D7N	Substitution - Missense	Pancreas
COSM1579545	c.596C>T	p.P199L	Substitution - Missense	Haematopoietic_and_lymphoid_tissue
COSM988849	c.53G>A	p.R18H	Substitution - Missense	Endometrium
COSM5763655	c.488C>A	p.A163D	Substitution - Missense	Large_intestine
COSM3526232	c.1086C>T	p.F362F	Substitution - coding silent	Large_intestine
COSM1611269	c.529G>A	p.G177R	Substitution - Missense	Liver
COSM4420993	c.63T>A	p.F21L	Substitution - Missense	Ovary
COSM3821547	c.1071C>T	p.C357C	Substitution - coding silent	Breast
COSM988841	c.181C>A	p.L61I	Substitution - Missense	Endometrium
COSM1680361	c.1075A>G	p.K359E	Substitution - Missense	Large_intestine
COSM5942780	c.1147-6C>T	p.?	Unknown	Skin
COSM4153981	c.909+3G>T	p.?	Unknown	Kidney
COSM5576168	c.1054C>T	p.R352C	Substitution - Missense	Stomach
COSM3526232	c.1086C>T	p.F362F	Substitution - coding silent	Skin
COSM1659316	c.1003_1010delAACCGCAA	p.N335fs*57	Deletion - Frameshift	Kidney
COSM4754511	c.1753C>T	p.R585*	Substitution - Nonsense	Stomach
COSM4630386	c.1040G>A	p.R347Q	Substitution - Missense	Large_intestine
COSM988830	c.1123C>T	p.R375C	Substitution - Missense	Large_intestine
COSM1611269	c.529G>A	p.G177R	Substitution - Missense	Liver
COSM1680361	c.1075A>G	p.K359E	Substitution - Missense	Large_intestine
COSM1659312	c.1414C>T	p.P472S	Substitution - Missense	Kidney
COSM988845	c.64C>T	p.R22C	Substitution - Missense	Ovary
COSM4700957	c.392G>T	p.G131V	Substitution - Missense	Large_intestine
COSM3378513	c.1237C>T	p.R413*	Substitution - Nonsense	Stomach
COSM5388204	c.850C>T	p.P284S	Substitution - Missense	Skin
COSM282692	c.1367T>G	p.L456R	Substitution - Missense	Lung
COSM5369281	c.674_680delGTGGAGT	p.C225fs*95	Deletion - Frameshift	Haematopoietic_and_lymphoid_tissue
COSM4937133	c.1324G>T	p.E442*	Substitution - Nonsense	Liver
COSM988836	c.562T>A	p.C188S	Substitution - Missense	Endometrium
COSM339350	c.1584+1G>A	p.?	Unknown	Lung
COSM473893	c.173A>G	p.D58G	Substitution - Missense	Kidney
COSM2879172	c.1072G>A	p.D358N	Substitution - Missense	Large_intestine
COSM294549	c.685C>T	p.R229W	Substitution - Missense	Large_intestine
COSM245602	c.392+1G>A	p.?	Unknown	Prostate
COSM3526232	c.1086C>T	p.F362F	Substitution - coding silent	Large_intestine
COSM3403551	c.225G>A	p.K75K	Substitution - coding silent	Central_nervous_system
COSM5770031	c.1225C>T	p.P409S	Substitution - Missense	Breast
COSM4877295	c.1508C>T	p.A503V	Substitution - Missense	Large_intestine
COSM4877295	c.1508C>T	p.A503V	Substitution - Missense	Prostate
COSM5644147	c.111-1G>T	p.?	Unknown	Oesophagus
COSM5691287	c.1804G>T	p.A602S	Substitution - Missense	Soft_tissue
COSM5024673	c.1460C>A	p.S487Y	Substitution - Missense	Large_intestine
COSM3378513	c.1237C>T	p.R413*	Substitution - Nonsense	Pancreas
COSM988832	c.1105C>T	p.R369C	Substitution - Missense	Endometrium
COSM988838	c.506G>A	p.R169K	Substitution - Missense	Endometrium
COSM4072465	c.392+2T>C	p.?	Unknown	Stomach
COSM140173	c.181C>T	p.L61F	Substitution - Missense	Skin
COSM3526232	c.1086C>T	p.F362F	Substitution - coding silent	Breast
COSM5569767	c.989C>T	p.T330M	Substitution - Missense	Prostate
COSM1685759	c.335delC	p.P112fs*73	Deletion - Frameshift	Skin
COSM5095793	c.757C>T	p.R253C	Substitution - Missense	Large_intestine
COSM4700950	c.1117C>T	p.R373C	Substitution - Missense	Large_intestine
COSM438184	c.640C>T	p.R214C	Substitution - Missense	Breast
COSM3378513	c.1237C>T	p.R413*	Substitution - Nonsense	Pancreas
COSM1711328	c.880C>T	p.P294S	Substitution - Missense	Skin
COSM3989577	c.999G>A	p.R333R	Substitution - coding silent	Kidney
COSM4700946	c.1352delC	p.P451fs*39	Deletion - Frameshift	Large_intestine
COSM3422219	c.778C>T	p.R260*	Substitution - Nonsense	Large_intestine
COSM335459	c.1151G>T	p.R384L	Substitution - Missense	Lung
COSM1388970	c.1303A>G	p.T435A	Substitution - Missense	Large_intestine
COSM3748663	c.1799C>A	p.P600H	Substitution - Missense	Stomach
COSM709408	c.961G>A	p.V321I	Substitution - Missense	Lung
COSM438181	c.1087G>A	p.G363R	Substitution - Missense	Breast
COSM3371073	c.382C>T	p.P128S	Substitution - Missense	Large_intestine
COSM4140102	c.392+3G>T	p.?	Unknown	Ovary
COSM438186	c.455C>T	p.T152M	Substitution - Missense	Breast
COSM1750538	c.1124G>A	p.R375H	Substitution - Missense	Urinary_tract
COSM709406	c.908C>T	p.P303L	Substitution - Missense	Lung
COSM5770031	c.1225C>T	p.P409S	Substitution - Missense	Breast
COSM276009	c.187G>A	p.D63N	Substitution - Missense	Large_intestine
COSM988828	c.1558G>A	p.V520I	Substitution - Missense	Endometrium
COSM4131003	c.1369G>T	p.V457L	Substitution - Missense	Thyroid
COSM294549	c.685C>T	p.R229W	Substitution - Missense	Stomach
COSM1711324	c.1429A>T	p.T477S	Substitution - Missense	Skin
COSM1388978	c.1037G>A	p.R346Q	Substitution - Missense	Large_intestine
COSM3378513	c.1237C>T	p.R413*	Substitution - Nonsense	Pancreas
COSM988851	c.49C>T	p.R17C	Substitution - Missense	Endometrium
COSM4983009	c.1536C>T	p.G512G	Substitution - coding silent	Oesophagus
COSM4072454	c.743G>A	p.R248H	Substitution - Missense	Stomach
COSM5811562	c.393-2A>T	p.?	Unknown	Liver
COSM4072450	c.1036C>T	p.R346W	Substitution - Missense	Large_intestine
COSM438184	c.640C>T	p.R214C	Substitution - Missense	Breast
COSM3796443	c.1129T>C	p.C377R	Substitution - Missense	Urinary_tract
COSM1711332	c.233C>T	p.P78L	Substitution - Missense	Skin
COSM124344	c.1409C>T	p.P470L	Substitution - Missense	Upper_aerodigestive_tract
COSM211971	c.1216C>T	p.R406*	Substitution - Nonsense	Large_intestine
COSM1750538	c.1124G>A	p.R375H	Substitution - Missense	Urinary_tract
COSM3422219	c.778C>T	p.R260*	Substitution - Nonsense	Skin
COSM4467873	c.1437C>T	p.A479A	Substitution - coding silent	Skin
COSM1680361	c.1075A>G	p.K359E	Substitution - Missense	Large_intestine
COSM5991324	c.1446+2T>G	p.?	Unknown	Prostate
COSM364443	c.1700G>T	p.G567V	Substitution - Missense	Lung
COSM5574739	c.156C>G	p.Y52*	Substitution - Nonsense	Haematopoietic_and_lymphoid_tissue
COSM4903174	c.851C>T	p.P284L	Substitution - Missense	Skin
COSM1257396	c.1327G>C	p.A443P	Substitution - Missense	Stomach
COSM124345	c.863C>T	p.P288L	Substitution - Missense	Upper_aerodigestive_tract
COSM988847	c.54C>T	p.R18R	Substitution - coding silent	Endometrium
COSM988845	c.64C>T	p.R22C	Substitution - Missense	Kidney
COSM4951062	c.995G>A	p.R332H	Substitution - Missense	Liver
COSM1286114	c.327G>T	p.K109N	Substitution - Missense	Autonomic_ganglia
COSM5210976	c.1592delA	p.D531fs*7	Deletion - Frameshift	Breast
COSM4644140	c.1106G>A	p.R369H	Substitution - Missense	Large_intestine
COSM3362543	c.1683A>T	p.P561P	Substitution - coding silent	Kidney
COSM4382884	c.1481C>G	p.A494G	Substitution - Missense	Large_intestine
COSM4414581	c.758G>A	p.R253H	Substitution - Missense	Kidney
COSM988826	c.1758T>C	p.D586D	Substitution - coding silent	Endometrium
COSM2879280	c.151C>T	p.R51*	Substitution - Nonsense	Central_nervous_system
COSM1680361	c.1075A>G	p.K359E	Substitution - Missense	Large_intestine
COSM4934721	c.882A>G	p.P294P	Substitution - coding silent	Liver
COSM5900366	c.340G>A	p.D114N	Substitution - Missense	Skin
COSM1388970	c.1303A>G	p.T435A	Substitution - Missense	Stomach
COSM1324566	c.309G>A	p.Q103Q	Substitution - coding silent	Ovary
COSM54434	c.1644G>T	p.K548N	Substitution - Missense	Central_nervous_system
COSM75373	c.1211G>A	p.R404H	Substitution - Missense	Ovary
COSM4140098	c.1334G>C	p.G445A	Substitution - Missense	Ovary
COSM988851	c.49C>T	p.R17C	Substitution - Missense	Kidney
COSM5833524	c.1510delG	p.D504fs*13	Deletion - Frameshift	Breast
COSM988834	c.648C>T	p.L216L	Substitution - coding silent	Endometrium
COSM3526236	c.219C>T	p.A73A	Substitution - coding silent	Skin
COSM988832	c.1105C>T	p.R369C	Substitution - Missense	Central_nervous_system
COSM4889842	c.823G>A	p.D275N	Substitution - Missense	Upper_aerodigestive_tract
COSM4926757	c.1300C>A	p.H434N	Substitution - Missense	Liver
COSM282692	c.1367T>G	p.L456R	Substitution - Missense	Large_intestine
COSM3796439	c.1633G>C	p.E545Q	Substitution - Missense	Urinary_tract
COSM4700954	c.962T>C	p.V321A	Substitution - Missense	Large_intestine
COSM1388982	c.1020C>A	p.A340A	Substitution - coding silent	Large_intestine
COSM5895036	c.1349C>T	p.P450L	Substitution - Missense	Skin
COSM6003393	c.1600C>A	p.L534M	Substitution - Missense	Prostate

> Text Mining based Variations [ TOP ]
There is no record for MBD1.

Summary
Symbol	MBD1
Name	methyl-CpG binding domain protein 1
Aliases	CXXC3; RFT; CXXC-type zinc finger protein 3; methyl-CpG binding domain protein 1 isoform PCM1; protein conta ......
Location	18q21.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Post-translational modification (PTM)

> Post-translational modification (PTM)

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Filter By:

Uniprot ID	Position	Amino Acid	Description	Upstream Enzyme	Affected By Mutation	Amino Acid Sequence Variant
Q9UIS9	391	S	Phosphoserine	-	No	None detected
Q9UIS9	399	S	Phosphoserine	-	No	None detected

Summary
Symbol	MBD1
Name	methyl-CpG binding domain protein 1
Aliases	CXXC3; RFT; CXXC-type zinc finger protein 3; methyl-CpG binding domain protein 1 isoform PCM1; protein conta ......
Location	18q21.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Expression analysis in primary tumor tissue from TCGA > Expression level in cancer cell line from CCLE > Expression level in human normal tissue from HPA > Text mining based expression change

> The Cancer Genome Atlas (TCGA)

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Differential expression analysis for cancers with more than 10 normal samples

Cancer	Full Name	# N	# T	Median (N)	Median (T)	LogFC	Adj. P	Status
BLCA	Bladder urothelial carcinoma	19	408	5.837	5.91	0.149	0.305	NS
BRCA	Breast invasive carcinoma	112	1100	5.706	5.592	-0.106	0.00819	NS
CESC	Cervical and endocervical cancers	3	306	5.856	6.004	NA	NA	NA
COAD	Colon adenocarcinoma	41	459	5.763	5.347	-0.415	1.28e-09	NS
ESCA	Esophageal carcinoma	11	185	5.859	5.666	-0.307	0.159	NS
GBM	Glioblastoma multiforme	5	166	6.273	5.891	NA	NA	NA
HNSC	Head and Neck squamous cell carcinoma	44	522	5.787	5.768	0.014	0.9	NS
KIRC	Kidney renal clear cell carcinoma	72	534	5.525	5.721	0.154	0.000184	NS
KIRP	Kidney renal papillary cell carcinoma	32	291	5.806	5.855	0.011	0.889	NS
LAML	Acute Myeloid Leukemia	0	173	NA	6.361	NA	NA	NA
LGG	Brain Lower Grade Glioma	0	530	NA	6.08	NA	NA	NA
LIHC	Liver hepatocellular carcinoma	50	373	4.82	5.088	0.211	0.000593	NS
LUAD	Lung adenocarcinoma	59	517	5.568	5.541	-0.02	0.753	NS
LUSC	Lung squamous cell carcinoma	51	501	5.599	5.813	0.228	0.0018	NS
OV	Ovarian serous cystadenocarcinoma	0	307	NA	5.52	NA	NA	NA
PAAD	Pancreatic adenocarcinoma	4	179	5.598	5.431	NA	NA	NA
PCPG	Pheochromocytoma and Paraganglioma	3	184	6.173	5.817	NA	NA	NA
PRAD	Prostate adenocarcinoma	52	498	5.726	5.615	-0.195	1.23e-05	NS
READ	Rectum adenocarcinoma	10	167	5.626	5.167	-0.437	0.0015	NS
SARC	Sarcoma	2	263	5.736	5.82	NA	NA	NA
SKCM	Skin Cutaneous Melanoma	1	472	5.512	5.88	NA	NA	NA
STAD	Stomach adenocarcinoma	35	415	5.905	5.506	-0.377	5.93e-07	NS
TGCT	Testicular Germ Cell Tumors	0	156	NA	5.507	NA	NA	NA
THCA	Thyroid carcinoma	59	509	5.911	5.787	-0.132	5e-06	NS
THYM	Thymoma	2	120	6.232	6.139	NA	NA	NA
UCEC	Uterine Corpus Endometrial Carcinoma	35	546	5.791	5.659	-0.11	0.116	NS

> Cancer Cell Line Encyclopedia (CCLE)

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Tissue	Cell Line	Expression Level (Microarray)
Autonomic ganglia	CHP126	7.3
Autonomic ganglia	CHP212	6.9
Autonomic ganglia	IMR32	7
Autonomic ganglia	KELLY	6.4
Autonomic ganglia	KPNRTBM1	7
Autonomic ganglia	KPNSI9S	6.3
Autonomic ganglia	KPNYN	7.3
Autonomic ganglia	MHHNB11	6.9
Autonomic ganglia	NB1	5.7
Autonomic ganglia	NH6	7
Autonomic ganglia	SHSY5Y	7.2
Autonomic ganglia	SIMA	7
Autonomic ganglia	SKNAS	7.4
Autonomic ganglia	SKNBE2	6.4
Autonomic ganglia	SKNDZ	6.9
Autonomic ganglia	SKNFI	7
Autonomic ganglia	SKNSH	6.9
Biliary tract	HUCCT1	6.7
Biliary tract	HUH28	7.3
Biliary tract	SNU1079	6
Biliary tract	SNU1196	6.7
Biliary tract	SNU245	6.3
Biliary tract	SNU308	7.1
Biliary tract	SNU478	6.5
Bone	143B	7.5
Bone	A673	6.9
Bone	CADOES1	6.6
Bone	CAL78	7
Bone	G292CLONEA141B1	7.2
Bone	HOS	6.4
Bone	HS706T	7.3
Bone	HS737T	7.2
Bone	HS819T	6.9
Bone	HS821T	6.8
Bone	HS822T	7
Bone	HS863T	6.7
Bone	HS870T	7
Bone	HS888T	6.7
Bone	MG63	6.9
Bone	MHHES1	6.6
Bone	OUMS27	7.2
Bone	RDES	7.2
Bone	SJSA1	7.1
Bone	SKES1	7.1
Bone	SKNMC	7.1
Bone	SW1353	7
Bone	T173	7.1
Bone	TC71	7.3
Bone	U2OS	6.5
Breast	AU565	6.5
Breast	BT20	6.1
Breast	BT474	7.1
Breast	BT483	6.4
Breast	BT549	7
Breast	CAL120	6.5
Breast	CAL148	7.4
Breast	CAL51	6.8
Breast	CAL851	6.1
Breast	CAMA1	7.1
Breast	DU4475	6.9
Breast	EFM192A	6.5
Breast	EFM19	6.5
Breast	EVSAT	6.8
Breast	HCC1143	6.8
Breast	HCC1187	7.6
Breast	HCC1395	7.7
Breast	HCC1419	6.2
Breast	HCC1428	6.4
Breast	HCC1500	7.2
Breast	HCC1569	6.7
Breast	HCC1599	7.1
Breast	HCC1806	6
Breast	HCC1937	5.5
Breast	HCC1954	6.3
Breast	HCC202	7
Breast	HCC2157	6.9
Breast	HCC2218	7
Breast	HCC38	6.8
Breast	HCC70	7.3
Breast	HDQP1	6
Breast	HMC18	7.2
Breast	HS274T	6.7
Breast	HS281T	6.8
Breast	HS343T	6.7
Breast	HS578T	7.2
Breast	HS606T	6.9
Breast	HS739T	7.1
Breast	HS742T	7
Breast	JIMT1	5.9
Breast	KPL1	6.5
Breast	MCF7	6.7
Breast	MDAMB134VI	7.3
Breast	MDAMB157	6.4
Breast	MDAMB175VII	6.6
Breast	MDAMB231	6.8
Breast	MDAMB361	6.8
Breast	MDAMB415	6.2
Breast	MDAMB436	6.7
Breast	MDAMB453	7.3
Breast	MDAMB468	6.9
Breast	SKBR3	6.3
Breast	T47D	7.1
Breast	UACC812	6.8
Breast	UACC893	5.6
Breast	YMB1	7.2
Breast	ZR751	7.3
Breast	ZR7530	6.2
Central nervous system	1321N1	6.8
Central nervous system	42MGBA	7.2
Central nervous system	8MGBA	7.1
Central nervous system	A172	6.2
Central nervous system	AM38	6.4
Central nervous system	BECKER	7.3
Central nervous system	CAS1	7
Central nervous system	CCFSTTG1	7.5
Central nervous system	D283MED	6.8
Central nervous system	D341MED	7.8
Central nervous system	DAOY	6.6
Central nervous system	DBTRG05MG	6.5
Central nervous system	DKMG	6.7
Central nervous system	GAMG	6.7
Central nervous system	GB1	6.8
Central nervous system	GI1	6.5
Central nervous system	GMS10	7
Central nervous system	GOS3	6
Central nervous system	H4	7
Central nervous system	HS683	7.1
Central nervous system	KALS1	7.1
Central nervous system	KG1C	6.3
Central nervous system	KNS42	6.9
Central nervous system	KNS60	6.4
Central nervous system	KNS81	6.9
Central nervous system	KS1	7.1
Central nervous system	LN18	7.2
Central nervous system	LN229	7.1
Central nervous system	M059K	7.1
Central nervous system	MOGGCCM	6.5
Central nervous system	MOGGUVW	7.2
Central nervous system	NMCG1	6.8
Central nervous system	ONS76	6.6
Central nervous system	SF126	7.1
Central nervous system	SF295	7.1
Central nervous system	SNB19	6.2
Central nervous system	SNU1105	6.6
Central nervous system	SNU201	6.6
Central nervous system	SNU466	6.6
Central nervous system	SNU489	6.9
Central nervous system	SNU626	6.3
Central nervous system	SNU738	6.7
Central nervous system	SW1088	7.1
Central nervous system	SW1783	6.9
Central nervous system	T98G	6.5
Central nervous system	TM31	7.3
Central nervous system	U118MG	7.4
Central nervous system	U138MG	7.3
Central nervous system	U251MG	5.9
Central nervous system	U87MG	7.1
Central nervous system	YH13	7.1
Central nervous system	YKG1	6.5
Endometrium	AN3CA	7.1
Endometrium	COLO684	7
Endometrium	EFE184	6.7
Endometrium	EN	7.2
Endometrium	ESS1	7
Endometrium	HEC108	6.5
Endometrium	HEC151	7.2
Endometrium	HEC1A	6.8
Endometrium	HEC1B	6.6
Endometrium	HEC251	6.8
Endometrium	HEC265	6.8
Endometrium	HEC50B	6.3
Endometrium	HEC59	6.8
Endometrium	HEC6	6.7
Endometrium	ISHIKAWAHERAKLIO02ER	6.7
Endometrium	JHUEM1	6.9
Endometrium	JHUEM2	7.1
Endometrium	JHUEM3	5.8
Endometrium	KLE	7.6
Endometrium	MFE280	5.9
Endometrium	MFE296	7.2
Endometrium	MFE319	7.4
Endometrium	RL952	7
Endometrium	SNGM	6.8
Endometrium	SNU1077	5.9
Endometrium	SNU685	6.2
Endometrium	TEN	6.4
Haematopoietic and lymphoid	697	7
Haematopoietic and lymphoid	A3KAW	7.3
Haematopoietic and lymphoid	A4FUK	7.6
Haematopoietic and lymphoid	ALLSIL	7.6
Haematopoietic and lymphoid	AML193	7.7
Haematopoietic and lymphoid	AMO1	7.4
Haematopoietic and lymphoid	BCP1	8.2
Haematopoietic and lymphoid	BDCM	7.2
Haematopoietic and lymphoid	BL41	7.6
Haematopoietic and lymphoid	BL70	7.7
Haematopoietic and lymphoid	BV173	7.5
Haematopoietic and lymphoid	CA46	7.3
Haematopoietic and lymphoid	CI1	7.7
Haematopoietic and lymphoid	CMK115	6.9
Haematopoietic and lymphoid	CMK86	7.4
Haematopoietic and lymphoid	CMK	7.2
Haematopoietic and lymphoid	CMLT1	7.3
Haematopoietic and lymphoid	COLO775	7.6
Haematopoietic and lymphoid	DAUDI	7.7
Haematopoietic and lymphoid	DB	7.5
Haematopoietic and lymphoid	DEL	6.7
Haematopoietic and lymphoid	DND41	7.8
Haematopoietic and lymphoid	DOHH2	7.3
Haematopoietic and lymphoid	EB1	7.3
Haematopoietic and lymphoid	EB2	7.3
Haematopoietic and lymphoid	EHEB	7.1
Haematopoietic and lymphoid	EJM	7.4
Haematopoietic and lymphoid	EM2	7.4
Haematopoietic and lymphoid	EOL1	7.3
Haematopoietic and lymphoid	F36P	7.1
Haematopoietic and lymphoid	GA10	7.4
Haematopoietic and lymphoid	GDM1	7.2
Haematopoietic and lymphoid	GRANTA519	7.8
Haematopoietic and lymphoid	HDLM2	6.9
Haematopoietic and lymphoid	HDMYZ	6.9
Haematopoietic and lymphoid	HEL9217	7.4
Haematopoietic and lymphoid	HEL	7.4
Haematopoietic and lymphoid	HH	7.1
Haematopoietic and lymphoid	HL60	7.8
Haematopoietic and lymphoid	HPBALL	7.5
Haematopoietic and lymphoid	HS604T	6.6
Haematopoietic and lymphoid	HS611T	7.4
Haematopoietic and lymphoid	HS616T	7.1
Haematopoietic and lymphoid	HS751T	6.5
Haematopoietic and lymphoid	HT	7.4
Haematopoietic and lymphoid	HTK	7.2
Haematopoietic and lymphoid	HUNS1	7.8
Haematopoietic and lymphoid	HUT102	7.3
Haematopoietic and lymphoid	HUT78	6.9
Haematopoietic and lymphoid	JEKO1	7.9
Haematopoietic and lymphoid	JK1	7.5
Haematopoietic and lymphoid	JM1	7.3
Haematopoietic and lymphoid	JURKAT	7.1
Haematopoietic and lymphoid	JURLMK1	6.8
Haematopoietic and lymphoid	JVM2	7.3
Haematopoietic and lymphoid	JVM3	7.3
Haematopoietic and lymphoid	K562	6.8
Haematopoietic and lymphoid	KARPAS299	7.2
Haematopoietic and lymphoid	KARPAS422	7.3
Haematopoietic and lymphoid	KARPAS620	8.2
Haematopoietic and lymphoid	KASUMI1	7
Haematopoietic and lymphoid	KASUMI2	7
Haematopoietic and lymphoid	KASUMI6	7.4
Haematopoietic and lymphoid	KCL22	6.7
Haematopoietic and lymphoid	KE37	7.2
Haematopoietic and lymphoid	KE97	7.8
Haematopoietic and lymphoid	KG1	7.6
Haematopoietic and lymphoid	KHM1B	7.8
Haematopoietic and lymphoid	KIJK	7.2
Haematopoietic and lymphoid	KMH2	6.2
Haematopoietic and lymphoid	KMM1	7.4
Haematopoietic and lymphoid	KMS11	8.3
Haematopoietic and lymphoid	KMS12BM	7.6
Haematopoietic and lymphoid	KMS18	7.4
Haematopoietic and lymphoid	KMS20	7.4
Haematopoietic and lymphoid	KMS21BM	7.8
Haematopoietic and lymphoid	KMS26	8.4
Haematopoietic and lymphoid	KMS27	8.2
Haematopoietic and lymphoid	KMS28BM	7.8
Haematopoietic and lymphoid	KMS34	8
Haematopoietic and lymphoid	KO52	7.7
Haematopoietic and lymphoid	KOPN8	7.7
Haematopoietic and lymphoid	KU812	7
Haematopoietic and lymphoid	KYO1	6.8
Haematopoietic and lymphoid	L1236	7.1
Haematopoietic and lymphoid	L363	7.3
Haematopoietic and lymphoid	L428	6.9
Haematopoietic and lymphoid	L540	6.7
Haematopoietic and lymphoid	LAMA84	6.9
Haematopoietic and lymphoid	LOUCY	7.4
Haematopoietic and lymphoid	LP1	8.1
Haematopoietic and lymphoid	M07E	6.5
Haematopoietic and lymphoid	MC116	7.6
Haematopoietic and lymphoid	ME1	7.9
Haematopoietic and lymphoid	MEC1	7
Haematopoietic and lymphoid	MEC2	7.9
Haematopoietic and lymphoid	MEG01	7.9
Haematopoietic and lymphoid	MHHCALL2	8
Haematopoietic and lymphoid	MHHCALL3	7.4
Haematopoietic and lymphoid	MHHCALL4	7.2
Haematopoietic and lymphoid	MINO	7.9
Haematopoietic and lymphoid	MJ	7.1
Haematopoietic and lymphoid	MM1S	7.5
Haematopoietic and lymphoid	MOLM13	7.4
Haematopoietic and lymphoid	MOLM16	6.7
Haematopoietic and lymphoid	MOLM6	7.2
Haematopoietic and lymphoid	MOLP2	8.1
Haematopoietic and lymphoid	MOLP8	7
Haematopoietic and lymphoid	MOLT13	7.1
Haematopoietic and lymphoid	MOLT16	7.2
Haematopoietic and lymphoid	MOLT4	7.6
Haematopoietic and lymphoid	MONOMAC1	7.7
Haematopoietic and lymphoid	MONOMAC6	8.1
Haematopoietic and lymphoid	MOTN1	7.6
Haematopoietic and lymphoid	MUTZ5	7.5
Haematopoietic and lymphoid	MV411	7.4
Haematopoietic and lymphoid	NALM19	7.5
Haematopoietic and lymphoid	NALM1	7.3
Haematopoietic and lymphoid	NALM6	7.3
Haematopoietic and lymphoid	NAMALWA	7.8
Haematopoietic and lymphoid	NB4	7
Haematopoietic and lymphoid	NCIH929	8
Haematopoietic and lymphoid	NCO2	8
Haematopoietic and lymphoid	NOMO1	7
Haematopoietic and lymphoid	NUDHL1	9.1
Haematopoietic and lymphoid	NUDUL1	7
Haematopoietic and lymphoid	OCIAML2	7
Haematopoietic and lymphoid	OCIAML3	7.5
Haematopoietic and lymphoid	OCIAML5	7.2
Haematopoietic and lymphoid	OCILY10	7.4
Haematopoietic and lymphoid	OCILY19	7.5
Haematopoietic and lymphoid	OCILY3	8.1
Haematopoietic and lymphoid	OCIM1	7.3
Haematopoietic and lymphoid	OPM2	7.2
Haematopoietic and lymphoid	P12ICHIKAWA	7.3
Haematopoietic and lymphoid	P31FUJ	7.7
Haematopoietic and lymphoid	P3HR1	7.7
Haematopoietic and lymphoid	PCM6	8
Haematopoietic and lymphoid	PEER	7.9
Haematopoietic and lymphoid	PF382	7.7
Haematopoietic and lymphoid	PFEIFFER	7.1
Haematopoietic and lymphoid	PL21	7.2
Haematopoietic and lymphoid	RAJI	7.3
Haematopoietic and lymphoid	RCHACV	7
Haematopoietic and lymphoid	REC1	7.2
Haematopoietic and lymphoid	REH	7.6
Haematopoietic and lymphoid	RI1	9.1
Haematopoietic and lymphoid	RL	6.9
Haematopoietic and lymphoid	RPMI8226	7.5
Haematopoietic and lymphoid	RPMI8402	7
Haematopoietic and lymphoid	RS411	7.4
Haematopoietic and lymphoid	SEM	7.3
Haematopoietic and lymphoid	SET2	7.2
Haematopoietic and lymphoid	SIGM5	7.5
Haematopoietic and lymphoid	SKM1	7.6
Haematopoietic and lymphoid	SKMM2	8.4
Haematopoietic and lymphoid	SR786	6.5
Haematopoietic and lymphoid	ST486	7.4
Haematopoietic and lymphoid	SUDHL10	7.3
Haematopoietic and lymphoid	SUDHL1	7
Haematopoietic and lymphoid	SUDHL4	8
Haematopoietic and lymphoid	SUDHL5	7.5
Haematopoietic and lymphoid	SUDHL6	7.7
Haematopoietic and lymphoid	SUDHL8	7.2
Haematopoietic and lymphoid	SUPB15	7.5
Haematopoietic and lymphoid	SUPHD1	8.4
Haematopoietic and lymphoid	SUPM2	6.5
Haematopoietic and lymphoid	SUPT11	7.8
Haematopoietic and lymphoid	SUPT1	7.7
Haematopoietic and lymphoid	TALL1	7.4
Haematopoietic and lymphoid	TF1	7.1
Haematopoietic and lymphoid	THP1	7.7
Haematopoietic and lymphoid	TO175T	7
Haematopoietic and lymphoid	TOLEDO	7.8
Haematopoietic and lymphoid	U266B1	8
Haematopoietic and lymphoid	U937	7.8
Haematopoietic and lymphoid	UT7	7.2
Haematopoietic and lymphoid	WSUDLCL2	7.4
Kidney	769P	7
Kidney	786O	7
Kidney	A498	6.5
Kidney	A704	6.4
Kidney	ACHN	6.6
Kidney	BFTC909	6.9
Kidney	CAKI1	6.7
Kidney	CAKI2	6.2
Kidney	CAL54	6.5
Kidney	KMRC1	6
Kidney	KMRC20	6.6
Kidney	KMRC2	7
Kidney	KMRC3	7.2
Kidney	OSRC2	6.2
Kidney	RCC10RGB	6.2
Kidney	SNU1272	6.7
Kidney	SNU349	6.5
Kidney	TUHR10TKB	6.7
Kidney	TUHR14TKB	6.9
Kidney	TUHR4TKB	7
Kidney	VMRCRCW	7.6
Kidney	VMRCRCZ	6.7
Large intestine	C2BBE1	6.3
Large intestine	CCK81	7
Large intestine	CL11	6.4
Large intestine	CL14	6
Large intestine	CL34	6.7
Large intestine	CL40	7
Large intestine	COLO205	6.4
Large intestine	COLO320	6.6
Large intestine	COLO678	6.8
Large intestine	CW2	7.3
Large intestine	DLD1	7.1
Large intestine	GP2D	6.8
Large intestine	HCC56	6.2
Large intestine	HCT116	7
Large intestine	HCT15	7.2
Large intestine	HS675T	7.1
Large intestine	HS698T	6.9
Large intestine	HT115	7.2
Large intestine	HT29	6.7
Large intestine	HT55	6.5
Large intestine	KM12	6.2
Large intestine	LOVO	6.9
Large intestine	LS1034	6.6
Large intestine	LS123	6
Large intestine	LS180	7.2
Large intestine	LS411N	6.6
Large intestine	LS513	6.6
Large intestine	MDST8	7.2
Large intestine	NCIH508	7
Large intestine	NCIH716	7.1
Large intestine	NCIH747	6
Large intestine	OUMS23	6
Large intestine	RCM1	6.9
Large intestine	RKO	7.4
Large intestine	SKCO1	7.7
Large intestine	SNU1040	6.9
Large intestine	SNU1197	6.7
Large intestine	SNU175	6.9
Large intestine	SNU283	6.4
Large intestine	SNU407	6.5
Large intestine	SNU503	6.5
Large intestine	SNU61	5.9
Large intestine	SNU81	7.3
Large intestine	SNUC1	6.9
Large intestine	SNUC2A	7.4
Large intestine	SNUC4	7
Large intestine	SNUC5	6.5
Large intestine	SW1116	6
Large intestine	SW1417	7
Large intestine	SW1463	6.6
Large intestine	SW403	6.6
Large intestine	SW480	6
Large intestine	SW48	7
Large intestine	SW620	6.4
Large intestine	SW837	6.1
Large intestine	SW948	6.7
Large intestine	T84	6.2
Liver	ALEXANDERCELLS	6.2
Liver	C3A	6.8
Liver	HEP3B217	6.5
Liver	HEPG2	6.8
Liver	HLE	6.4
Liver	HLF	6.5
Liver	HUH1	6.5
Liver	HUH6	4.6
Liver	HUH7	7.1
Liver	JHH1	6.4
Liver	JHH2	7
Liver	JHH4	6.6
Liver	JHH5	6.5
Liver	JHH6	6.4
Liver	JHH7	6.4
Liver	LI7	6.4
Liver	PLCPRF5	6.8
Liver	SKHEP1	6.4
Liver	SNU182	6.5
Liver	SNU387	6.7
Liver	SNU398	6.3
Liver	SNU423	6.5
Liver	SNU449	6.4
Liver	SNU475	6.6
Liver	SNU761	6.7
Liver	SNU878	6.5
Liver	SNU886	7.1
Lung	A549	6.4
Lung	ABC1	6.8
Lung	BEN	7.2
Lung	CAL12T	6.5
Lung	CALU1	7.7
Lung	CALU3	6.6
Lung	CALU6	6.5
Lung	CHAGOK1	6.7
Lung	COLO668	7.7
Lung	COLO699	7.4
Lung	CORL105	7.4
Lung	CORL23	7
Lung	CORL24	6.7
Lung	CORL279	7.3
Lung	CORL311	7.1
Lung	CORL47	7.6
Lung	CORL51	7.1
Lung	CORL88	7.1
Lung	CORL95	7.6
Lung	CPCN	7.3
Lung	DMS114	7.3
Lung	DMS153	7.7
Lung	DMS273	6.9
Lung	DMS454	7.3
Lung	DMS53	7.9
Lung	DMS79	7.2
Lung	DV90	6.8
Lung	EBC1	6.5
Lung	EPLC272H	5.9
Lung	HARA	6.3
Lung	HCC1171	6.6
Lung	HCC1195	6.6
Lung	HCC15	6.5
Lung	HCC2279	6.2
Lung	HCC2935	6.6
Lung	HCC33	7.4
Lung	HCC366	6.4
Lung	HCC4006	6.4
Lung	HCC44	7.2
Lung	HCC78	6.9
Lung	HCC827	6.8
Lung	HCC95	6.6
Lung	HLC1	6.9
Lung	HLFA	7
Lung	HS229T	7.1
Lung	HS618T	7.2
Lung	IALM	7.5
Lung	KNS62	6.2
Lung	LC1F	6.5
Lung	LC1SQSF	6.3
Lung	LCLC103H	6.9
Lung	LCLC97TM1	6.9
Lung	LK2	7
Lung	LOUNH91	7.1
Lung	LU65	6.7
Lung	LU99	7.1
Lung	LUDLU1	6.6
Lung	LXF289	6.9
Lung	MORCPR	6.5
Lung	NCIH1048	6.9
Lung	NCIH1092	7
Lung	NCIH1105	7.2
Lung	NCIH1155	7.4
Lung	NCIH1184	7.6
Lung	NCIH1299	6.8
Lung	NCIH1339	6.9
Lung	NCIH1341	7.2
Lung	NCIH1355	6.8
Lung	NCIH1373	6.9
Lung	NCIH1385	7.2
Lung	NCIH1395	6.3
Lung	NCIH1435	6.5
Lung	NCIH1436	6.6
Lung	NCIH1437	6.4
Lung	NCIH146	7.7
Lung	NCIH1563	6.6
Lung	NCIH1568	6.2
Lung	NCIH1573	7.2
Lung	NCIH1581	6.8
Lung	NCIH1618	8.1
Lung	NCIH1623	6.6
Lung	NCIH1648	6.5
Lung	NCIH1650	6.8
Lung	NCIH1651	6.1
Lung	NCIH1666	6.9
Lung	NCIH1693	7.2
Lung	NCIH1694	7
Lung	NCIH1703	7.4
Lung	NCIH1734	7
Lung	NCIH1755	7.7
Lung	NCIH1781	6.9
Lung	NCIH1792	7.3
Lung	NCIH1793	6.5
Lung	NCIH1836	7.2
Lung	NCIH1838	7
Lung	NCIH1869	6.5
Lung	NCIH1876	7.4
Lung	NCIH1915	6.4
Lung	NCIH1930	7.5
Lung	NCIH1944	7.3
Lung	NCIH1963	8.6
Lung	NCIH196	6.8
Lung	NCIH1975	6.8
Lung	NCIH2009	6.6
Lung	NCIH2023	6.8
Lung	NCIH2029	7.3
Lung	NCIH2030	7.1
Lung	NCIH2066	6.4
Lung	NCIH2081	6.4
Lung	NCIH2085	6.7
Lung	NCIH2087	6.4
Lung	NCIH209	8
Lung	NCIH2106	6.9
Lung	NCIH2110	6.1
Lung	NCIH211	6.8
Lung	NCIH2122	7.4
Lung	NCIH2126	5.4
Lung	NCIH2141	7.2
Lung	NCIH2170	7
Lung	NCIH2171	7.3
Lung	NCIH2172	6.9
Lung	NCIH2196	7.3
Lung	NCIH2227	7.1
Lung	NCIH2228	6.5
Lung	NCIH226	7.4
Lung	NCIH2286	7.3
Lung	NCIH2291	6.3
Lung	NCIH2342	6.8
Lung	NCIH2347	7.4
Lung	NCIH23	7.1
Lung	NCIH2405	6.1
Lung	NCIH2444	6.9
Lung	NCIH292	7.1
Lung	NCIH322	7.3
Lung	NCIH3255	5.9
Lung	NCIH358	6.4
Lung	NCIH441	7
Lung	NCIH446	7.1
Lung	NCIH460	6.7
Lung	NCIH510	6.9
Lung	NCIH520	7.1
Lung	NCIH522	7.3
Lung	NCIH524	7.4
Lung	NCIH526	7.4
Lung	NCIH596	6.1
Lung	NCIH647	7.5
Lung	NCIH650	6.2
Lung	NCIH661	6.9
Lung	NCIH69	8.3
Lung	NCIH727	6.5
Lung	NCIH810	7.1
Lung	NCIH82	6.7
Lung	NCIH838	7.1
Lung	NCIH841	6.6
Lung	NCIH854	7.6
Lung	NCIH889	8.3
Lung	PC14	6.1
Lung	RERFLCAD1	6.9
Lung	RERFLCAD2	6.6
Lung	RERFLCAI	6.1
Lung	RERFLCKJ	6.5
Lung	RERFLCMS	6.7
Lung	RERFLCSQ1	7.1
Lung	SBC5	6.4
Lung	SCLC21H	6.6
Lung	SHP77	7.1
Lung	SKLU1	7.1
Lung	SKMES1	7.2
Lung	SQ1	6.8
Lung	SW1271	7.3
Lung	SW1573	6.3
Lung	SW900	6.2
Lung	VMRCLCD	6.3
Lung	VMRCLCP	5.9
Oesophagus	COLO680N	6.1
Oesophagus	ECGI10	5.7
Oesophagus	KYSE140	6.4
Oesophagus	KYSE150	7.2
Oesophagus	KYSE180	6.5
Oesophagus	KYSE270	6.6
Oesophagus	KYSE30	6.3
Oesophagus	KYSE410	6.7
Oesophagus	KYSE450	6.9
Oesophagus	KYSE510	6
Oesophagus	KYSE520	6.8
Oesophagus	KYSE70	6.7
Oesophagus	OE19	6.1
Oesophagus	OE33	5.9
Oesophagus	TE10	7.4
Oesophagus	TE11	6.8
Oesophagus	TE14	6.2
Oesophagus	TE15	6.7
Oesophagus	TE1	6.1
Oesophagus	TE4	6.8
Oesophagus	TE5	5.9
Oesophagus	TE6	6.5
Oesophagus	TE8	6
Oesophagus	TE9	6.4
Oesophagus	TT	6.3
Ovary	59M	6.5
Ovary	A2780	7.2
Ovary	CAOV3	6.6
Ovary	CAOV4	6.4
Ovary	COLO704	7.2
Ovary	COV318	6.8
Ovary	COV362	6.5
Ovary	COV434	6.6
Ovary	COV504	7.1
Ovary	COV644	5.9
Ovary	EFO21	7.1
Ovary	EFO27	6.9
Ovary	ES2	6.6
Ovary	FUOV1	7.1
Ovary	HEYA8	6.7
Ovary	HS571T	7
Ovary	IGROV1	7
Ovary	JHOC5	6.7
Ovary	JHOM1	6.8
Ovary	JHOM2B	6
Ovary	JHOS2	6.5
Ovary	JHOS4	7.6
Ovary	KURAMOCHI	5.8
Ovary	MCAS	6.5
Ovary	NIHOVCAR3	6.7
Ovary	OAW28	7.2
Ovary	OAW42	6.2
Ovary	OC314	6.2
Ovary	OC316	6.5
Ovary	ONCODG1	6.4
Ovary	OV56	6.9
Ovary	OV7	6.7
Ovary	OV90	6.2
Ovary	OVCAR4	6.1
Ovary	OVCAR8	6.2
Ovary	OVISE	6.3
Ovary	OVK18	6.9
Ovary	OVKATE	6.1
Ovary	OVMANA	6
Ovary	OVSAHO	6.9
Ovary	OVTOKO	6
Ovary	RMGI	7.7
Ovary	RMUGS	6.8
Ovary	SKOV3	7.1
Ovary	SNU119	6.5
Ovary	SNU840	6.8
Ovary	SNU8	6.8
Ovary	TOV112D	6.8
Ovary	TOV21G	6.8
Ovary	TYKNU	7.1
Pancreas	ASPC1	5.8
Pancreas	BXPC3	7.3
Pancreas	CAPAN1	6.3
Pancreas	CAPAN2	6.5
Pancreas	CFPAC1	6.6
Pancreas	DANG	6.8
Pancreas	HPAC	6.7
Pancreas	HPAFII	6.9
Pancreas	HS766T	6.9
Pancreas	HUPT3	7.2
Pancreas	HUPT4	6.7
Pancreas	KCIMOH1	6.4
Pancreas	KLM1	6.3
Pancreas	KP2	5.4
Pancreas	KP3	6.3
Pancreas	KP4	6.7
Pancreas	L33	6
Pancreas	MIAPACA2	7.2
Pancreas	PANC0203	6.5
Pancreas	PANC0213	6.7
Pancreas	PANC0327	6.5
Pancreas	PANC0403	6.6
Pancreas	PANC0504	6.6
Pancreas	PANC0813	6.4
Pancreas	PANC1005	6.6
Pancreas	PANC1	7
Pancreas	PATU8902	6.3
Pancreas	PATU8988S	6.7
Pancreas	PATU8988T	7.7
Pancreas	PK1	6.9
Pancreas	PK45H	6.2
Pancreas	PK59	7.5
Pancreas	PL45	6.8
Pancreas	PSN1	5.8
Pancreas	QGP1	7.3
Pancreas	SNU213	5.8
Pancreas	SNU324	7.1
Pancreas	SNU410	6
Pancreas	SU8686	6.1
Pancreas	SUIT2	6.1
Pancreas	SW1990	6
Pancreas	T3M4	6.1
Pancreas	TCCPAN2	6.2
Pancreas	YAPC	5.9
Pleura	ACCMESO1	7
Pleura	DM3	7
Pleura	ISTMES1	7.1
Pleura	ISTMES2	7.9
Pleura	JL1	7
Pleura	MPP89	7.2
Pleura	MSTO211H	7.5
Pleura	NCIH2052	7.1
Pleura	NCIH2452	7
Pleura	NCIH28	6.2
Prostate	22RV1	7.1
Prostate	DU145	6.5
Prostate	LNCAPCLONEFGC	6.8
Prostate	MDAPCA2B	7
Prostate	NCIH660	7.9
Prostate	PC3	6.5
Prostate	VCAP	6.6
Salivary gland	A253	6.1
Salivary gland	YD15	6.5
Skin	A101D	7.3
Skin	A2058	7.1
Skin	A375	6.9
Skin	C32	6.9
Skin	CHL1	7
Skin	CJM	7.7
Skin	COLO679	6.8
Skin	COLO741	6.3
Skin	COLO783	6.4
Skin	COLO792	6.5
Skin	COLO800	7.2
Skin	COLO818	6.8
Skin	COLO829	7.3
Skin	COLO849	6.7
Skin	G361	7.2
Skin	GRM	6.9
Skin	HMCB	7
Skin	HS294T	7
Skin	HS600T	7
Skin	HS688AT	7
Skin	HS695T	7.1
Skin	HS839T	7.1
Skin	HS852T	7.4
Skin	HS895T	6.8
Skin	HS934T	6.7
Skin	HS936T	6.7
Skin	HS939T	7.2
Skin	HS940T	7.1
Skin	HS944T	7.5
Skin	HT144	7
Skin	IGR1	6.2
Skin	IGR37	7.2
Skin	IGR39	6.4
Skin	IPC298	6.5
Skin	K029AX	7
Skin	LOXIMVI	7.3
Skin	MALME3M	6.4
Skin	MDAMB435S	6.5
Skin	MELHO	6.8
Skin	MELJUSO	7
Skin	MEWO	6.7
Skin	RPMI7951	6.7
Skin	RVH421	6.9
Skin	SH4	6.9
Skin	SKMEL1	6.9
Skin	SKMEL24	7
Skin	SKMEL28	6.4
Skin	SKMEL2	7.3
Skin	SKMEL30	6.6
Skin	SKMEL31	6.6
Skin	SKMEL3	7
Skin	SKMEL5	6.7
Skin	UACC257	6.8
Skin	UACC62	6.3
Skin	WM115	7.2
Skin	WM1799	6.2
Skin	WM2664	6.7
Skin	WM793	6.8
Skin	WM88	6.7
Skin	WM983B	6.6
Small intestine	HUTU80	7.5
Soft tissue	A204	6.9
Soft tissue	G401	7
Soft tissue	G402	6.9
Soft tissue	GCT	7.1
Soft tissue	HS729	7.2
Soft tissue	HT1080	8
Soft tissue	KYM1	6.6
Soft tissue	MESSA	7.1
Soft tissue	RD	6.8
Soft tissue	RH30	6.7
Soft tissue	RH41	6.8
Soft tissue	RKN	6.9
Soft tissue	S117	6.5
Soft tissue	SJRH30	6.8
Soft tissue	SKLMS1	7.3
Soft tissue	SKUT1	7.6
Soft tissue	TE125T	6.7
Soft tissue	TE159T	6.9
Soft tissue	TE441T	6.9
Soft tissue	TE617T	7.3
Stomach	2313287	6.7
Stomach	AGS	6.4
Stomach	AZ521	7.1
Stomach	ECC10	7.2
Stomach	ECC12	7.3
Stomach	FU97	6.5
Stomach	GCIY	6.9
Stomach	GSS	6.9
Stomach	GSU	6.8
Stomach	HGC27	7.1
Stomach	HS746T	7.9
Stomach	HUG1N	6.3
Stomach	IM95	7
Stomach	KATOIII	6.8
Stomach	KE39	7.1
Stomach	LMSU	7.3
Stomach	MKN1	7.4
Stomach	MKN45	6.2
Stomach	MKN74	6.8
Stomach	MKN7	6.7
Stomach	NCCSTCK140	6
Stomach	NCIN87	6.5
Stomach	NUGC2	7.9
Stomach	NUGC3	6.9
Stomach	NUGC4	6.8
Stomach	OCUM1	6.7
Stomach	RERFGC1B	6.1
Stomach	SH10TC	5.7
Stomach	SNU16	6.9
Stomach	SNU1	7.3
Stomach	SNU216	6
Stomach	SNU520	7.1
Stomach	SNU5	6.8
Stomach	SNU601	6.2
Stomach	SNU620	6.2
Stomach	SNU668	6.6
Stomach	SNU719	6.9
Stomach	TGBC11TKB	6.8
Thyroid	8305C	7.6
Thyroid	8505C	7
Thyroid	BCPAP	7.5
Thyroid	BHT101	7
Thyroid	CAL62	7
Thyroid	CGTHW1	6.9
Thyroid	FTC133	7
Thyroid	FTC238	6.5
Thyroid	ML1	6.2
Thyroid	SW579	7.5
Thyroid	TT2609C02	6.8
Thyroid	TT	6.8
Upper aerodigestive tract	BHY	6.1
Upper aerodigestive tract	BICR16	7.3
Upper aerodigestive tract	BICR18	5.7
Upper aerodigestive tract	BICR22	6.2
Upper aerodigestive tract	BICR31	6.2
Upper aerodigestive tract	BICR56	7.5
Upper aerodigestive tract	BICR6	6.7
Upper aerodigestive tract	CAL27	6.3
Upper aerodigestive tract	CAL33	5.8
Upper aerodigestive tract	DETROIT562	6.6
Upper aerodigestive tract	FADU	6.2
Upper aerodigestive tract	HS840T	7.3
Upper aerodigestive tract	HSC2	6.2
Upper aerodigestive tract	HSC3	6.6
Upper aerodigestive tract	HSC4	6.9
Upper aerodigestive tract	PECAPJ15	6
Upper aerodigestive tract	PECAPJ34CLONEC12	6.9
Upper aerodigestive tract	PECAPJ41CLONED2	6.7
Upper aerodigestive tract	PECAPJ49	6.2
Upper aerodigestive tract	SCC15	6.6
Upper aerodigestive tract	SCC25	6.6
Upper aerodigestive tract	SCC4	7.1
Upper aerodigestive tract	SCC9	7.2
Upper aerodigestive tract	SNU1076	6.3
Upper aerodigestive tract	SNU1214	7.5
Upper aerodigestive tract	SNU46	6.6
Upper aerodigestive tract	SNU899	6.8
Upper aerodigestive tract	YD10B	6.5
Upper aerodigestive tract	YD38	6.7
Upper aerodigestive tract	YD8	6.4
Urinary tract	5637	7.5
Urinary tract	639V	7.4
Urinary tract	647V	6.7
Urinary tract	BC3C	6.6
Urinary tract	BFTC905	5.9
Urinary tract	CAL29	6.7
Urinary tract	HS172T	6.9
Urinary tract	HT1197	6.2
Urinary tract	HT1376	7
Urinary tract	J82	7.3
Urinary tract	JMSU1	7.4
Urinary tract	KMBC2	7.9
Urinary tract	KU1919	7.1
Urinary tract	RT11284	5.7
Urinary tract	RT112	6.4
Urinary tract	RT4	5.7
Urinary tract	SCABER	7
Urinary tract	SW1710	6.5
Urinary tract	SW780	7.1
Urinary tract	T24	6.9
Urinary tract	TCCSUP	6.8
Urinary tract	UMUC1	6.6
Urinary tract	UMUC3	6.8
Urinary tract	VMCUB1	6.9

> The Human Protein Atlas (HPA)

[ TOP ]

Tissue	Expression Level (TPM)
Adipose tissue	21.5
Adrenal gland	28.6
Appendix	36.2
Bone marrow	28.2
Breast	20.7
Cerebral cortex	42.2
Cervix, uterine	27.1
Colon	19
Duodenum	25.6
Endometrium	34.5
Epididymis	24.8
Esophagus	23.2
Fallopian tube	33.2
Gallbladder	30.7
Heart muscle	17.9
Kidney	16.5
Liver	9
Lung	29.4
Lymph node	35.4
Ovary	31.3
Pancreas	5.4
Parathyroid gland	55
Placenta	35.1
Prostate	28.6
Rectum	19.7
Salivary gland	11.6
Seminal vesicle	32.7
Skeletal muscle	12.8
Skin	38.1
Small intestine	27.7
Smooth muscle	29.5
Spleen	38.3
Stomach	22.7
Testis	109
Thyroid gland	35.6
Tonsil	23.2
Urinary bladder	26.3

> Text Mining based Expression

[ TOP ]

PMID	Expression	Cancer	Evidence
26980696	Overexpression	Pancreatic Carcinoma	MBD1 (Methyl-CpG Binding Domain Protein 1) is highly expressed in pancreatic cancer.
23331011	Overexpression	Pancreatic Carcinoma	However, whether and how MBD1 is involved in tumorigenesis, especially in pancreatic cancer (PC), is currently unknown. We found that MBD1 was significantly up-regulated in PC tissues compared with the surrounding normal tissues according to RT-PCR data.
12646234	Underexpression	Prostate Carcinoma	We analyzed gene expression of MBD1, MBD2, MBD3, MBD4, and MeCP2 and protein expression of MBD1, MBD2, and MeCP2 in prostate cancer cell lines, benign prostate epithelium (BPH-1) cell line, 49 BPH tissues, and 46 prostate cancer tissues. We observed that, in BPH tissues and low-grade cancer tissues, MBD1 protein expression was very high and gradually decreased with increase of cancer grade.
12101420	Overexpression	Lung Carcinoma	When beta-actin was used as an internal control, the mRNA expression of three DNMTs (DNMT1, DNMT3A, and DNMT3B) and five MBPs (MBD1, MBD2, MBD3, MBD4, and MeCP2) was upregulated in SCLC, while only that of DNMT1, DNMT3B and MBD3 was upregulated in NSCLC, compared with normal lung tissues.
28473981	Underexpression (hypermethylation)	Colorectal Carcinoma	After comparing the methylation level of screened genes, we found that MBD1 gene had downregulated mRNA expression and upregulated methylation levels in advanced CRC and continuously upregulated methylation level in the progression of CRC.

Summary
Symbol	MBD1
Name	methyl-CpG binding domain protein 1
Aliases	CXXC3; RFT; CXXC-type zinc finger protein 3; methyl-CpG binding domain protein 1 isoform PCM1; protein conta ......
Location	18q21.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Somatic copy number alteration in primary tomur tissue

> The Cancer Genome Atlas (TCGA)

[ TOP ]

Correlation between expression and SCNA as well as percentage of patients in different status.

Cancer	Full Name	# Sample	R	P	% Loss	% Neutral	% Gain	Status
BLCA	Bladder urothelial carcinoma	404	0.578	2.33e-37	44.8	42.8	12.4	Loss
BRCA	Breast invasive carcinoma	1075	0.707	2.44e-163	33.4	52.4	14.2	Loss
CESC	Cervical and endocervical cancers	292	0.652	8.79e-37	27.7	61.6	10.6	Neutral
COAD	Colon adenocarcinoma	449	0.706	7.14e-69	61.7	35.9	2.4	Loss
ESCA	Esophageal carcinoma	183	0.66	3.02e-24	64.5	24.6	10.9	Loss
GBM	Glioblastoma multiforme	147	0.584	8.44e-15	13.6	73.5	12.9	Neutral
HNSC	Head and Neck squamous cell carcinoma	514	0.437	1.95e-25	50	43	7	Loss
KIRC	Kidney renal clear cell carcinoma	525	0.63	1.92e-59	18.3	77	4.8	Neutral
KIRP	Kidney renal papillary cell carcinoma	288	0.717	1.01e-46	15.3	81.6	3.1	Neutral
LAML	Acute Myeloid Leukemia	166	0.341	6.77e-06	3	97	0	Neutral
LGG	Brain Lower Grade Glioma	513	0.631	2.75e-58	13.6	83.6	2.7	Neutral
LIHC	Liver hepatocellular carcinoma	364	0.672	3.86e-49	25.8	65.9	8.2	Neutral
LUAD	Lung adenocarcinoma	512	0.692	2.62e-74	49.2	40.4	10.4	Loss
LUSC	Lung squamous cell carcinoma	498	0.615	3.66e-53	42	40.4	17.7	Loss
OV	Ovarian serous cystadenocarcinoma	300	0.869	4.58e-93	59.3	28.7	12	Loss
PAAD	Pancreatic adenocarcinoma	177	0.749	4.81e-33	67.2	28.2	4.5	Loss
PCPG	Pheochromocytoma and Paraganglioma	162	0.45	1.87e-09	4.3	88.9	6.8	Neutral
PRAD	Prostate adenocarcinoma	491	0.703	2.57e-74	22.8	75.4	1.8	Neutral
READ	Rectum adenocarcinoma	164	0.696	4.24e-25	87.2	12.8	0	Loss
SARC	Sarcoma	255	0.775	2.27e-52	32.5	51.4	16.1	Neutral
SKCM	Skin Cutaneous Melanoma	367	0.719	1.07e-59	27.5	58.9	13.6	Neutral
STAD	Stomach adenocarcinoma	413	0.75	8.5e-76	46	45	9	Loss
TGCT	Testicular Germ Cell Tumors	150	0.501	6.72e-11	81.3	16.7	2	Loss
THCA	Thyroid carcinoma	497	0.302	6.61e-12	0.8	98	1.2	Neutral
THYM	Thymoma	119	0.606	2.84e-13	5.9	91.6	2.5	Neutral
UCEC	Uterine Corpus Endometrial Carcinoma	537	0.606	4.84e-55	16.2	75.6	8.2	Neutral

Summary
Symbol	MBD1
Name	methyl-CpG binding domain protein 1
Aliases	CXXC3; RFT; CXXC-type zinc finger protein 3; methyl-CpG binding domain protein 1 isoform PCM1; protein conta ......
Location	18q21.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Methylation level in the promoter region of CR

> Methylation level in the promoter region of CR

[ TOP ]

Correlation between expression and methylation as well as differential methylation analysis.

Cancer	Full Name	R	P	# N	# T	Delta beta (T vs N)	P value (T vs N)	Status
BLCA	Bladder urothelial carcinoma	-0.4	0	17	408	-0.106	1.39e-09	NS/NA
BRCA	Breast invasive carcinoma	-0.309	1.21e-20	83	785	-0.004	0.0556	NS/NA
CESC	Cervical and endocervical cancers	-0.344	6.76e-10	3	306	NA	NA	NS/NA
COAD	Colon adenocarcinoma	-0.445	0	19	297	0.01	9.34e-08	NS/NA
ESCA	Esophageal carcinoma	-0.555	0	9	185	NA	NA	NS/NA
GBM	Glioblastoma multiforme	-0.545	3.89e-06	1	64	NA	NA	NS/NA
HNSC	Head and Neck squamous cell carcinoma	-0.262	7.24e-10	20	522	0.002	0.0215	NS/NA
KIRC	Kidney renal clear cell carcinoma	-0.188	0.000484	24	319	-0.02	0.121	NS/NA
KIRP	Kidney renal papillary cell carcinoma	-0.397	1.39e-12	23	275	-0.089	4.02e-06	NS/NA
LAML	Acute Myeloid Leukemia	-0.131	0.0884	0	170	NA	NA	NS/NA
LGG	Brain Lower Grade Glioma	-0.191	1.03e-05	0	530	NA	NA	NS/NA
LIHC	Liver hepatocellular carcinoma	-0.287	3.15e-09	41	373	0.001	0.05	NS/NA
LUAD	Lung adenocarcinoma	-0.252	2.7e-08	21	456	-0.02	0.000764	NS/NA
LUSC	Lung squamous cell carcinoma	-0.275	6.3e-08	8	370	NA	NA	NS/NA
OV	Ovarian serous cystadenocarcinoma	-0.95	0.000353	0	9	NA	NA	NS/NA
PAAD	Pancreatic adenocarcinoma	-0.336	3.69e-06	4	179	NA	NA	NS/NA
PCPG	Pheochromocytoma and Paraganglioma	-0.15	0.0401	3	184	NA	NA	NS/NA
PRAD	Prostate adenocarcinoma	-0.156	0.000313	35	498	0.001	0.0104	NS/NA
READ	Rectum adenocarcinoma	-0.431	8.56e-06	2	99	NA	NA	NS/NA
SARC	Sarcoma	-0.459	0	0	263	NA	NA	NS/NA
SKCM	Skin Cutaneous Melanoma	-0.391	0	1	471	NA	NA	NS/NA
STAD	Stomach adenocarcinoma	-0.385	1.53e-14	0	372	NA	NA	NS/NA
TGCT	Testicular Germ Cell Tumors	-0.207	0.00966	0	156	NA	NA	NS/NA
THCA	Thyroid carcinoma	-0.01	0.822	50	509	0.008	0.24	NS/NA
THYM	Thymoma	-0.243	0.00719	2	120	NA	NA	NS/NA
UCEC	Uterine Corpus Endometrial Carcinoma	-0.291	1.88e-10	34	431	-0.001	0.726	NS/NA

Summary
Symbol	MBD1
Name	methyl-CpG binding domain protein 1
Aliases	CXXC3; RFT; CXXC-type zinc finger protein 3; methyl-CpG binding domain protein 1 isoform PCM1; protein conta ......
Location	18q21.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Primary tumor tissue from TCGA > Normal tumor tissue from HPA

>The Cancer Genome Atlas (TCGA) [ TOP ]
There is no record.

> The Human Protein Atlas (HPA)

[ TOP ]

Tissue	Level	Level Name
Adrenal gland	2	Medium
Appendix	2	Medium
Bone marrow	2	Medium
Breast	1	Low
Bronchus	2	Medium
Caudate	1	Low
Cerebellum	1	Low
Cerebral cortex	2	Medium
Cervix, uterine	2	Medium
Colon	2	Medium
Duodenum	2	Medium
Endometrium	2	Medium
Epididymis	1	Low
Esophagus	2	Medium
Fallopian tube	0	Not detected
Gallbladder	2	Medium
Heart muscle	2	Medium
Hippocampus	1	Low
Kidney	2	Medium
Liver	0	Not detected
Lung	2	Medium
Lymph node	2	Medium
Nasopharynx	2	Medium
Oral mucosa	2	Medium
Ovary	1	Low
Pancreas	1	Low
Parathyroid gland	2	Medium
Placenta	2	Medium
Prostate	1	Low
Rectum	2	Medium
Salivary gland	1	Low
Seminal vesicle	0	Not detected
Skeletal muscle	1	Low
Skin	1	Low
Small intestine	2	Medium
Smooth muscle	0	Not detected
Soft tissue	2	Medium
Spleen	2	Medium
Stomach	2	Medium
Testis	2	Medium
Thyroid gland	1	Low
Tonsil	2	Medium
Urinary bladder	1	Low
Vagina	1	Low

Summary
Symbol	MBD1
Name	methyl-CpG binding domain protein 1
Aliases	CXXC3; RFT; CXXC-type zinc finger protein 3; methyl-CpG binding domain protein 1 isoform PCM1; protein conta ......
Location	18q21.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Association between expresson and subtype > Overall survival analysis based on expression > Association between expresson and stage > Association between expresson and grade

> Subtype

[ TOP ]

Association between expresson and subtype.

Cancer	Full Name	# Patients	P Value (Kruskal-Wallis)	Association	Source
BLCA	Bladder urothelial carcinoma	128	0.045	Significant	24476821
BRCA	Breast invasive carcinoma	521	8.39e-06	Significant	23000897
COAD	Colon adenocarcinoma	149	0.00274	Significant	22810696
GBM	Glioblastoma multiforme	157	0.00742	Significant	26824661
HNSC	Head and Neck squamous cell carcinoma	279	1.98e-05	Significant	25631445
KIRP	Kidney renal papillary cell carcinoma	161	0.1	NS	26536169
LGG	Brain Lower Grade Glioma	513	5.81e-09	Significant	26824661
LUAD	Lung adenocarcinoma	230	0.0377	Significant	25079552
LUSC	Lung squamous cell carcinoma	178	0.146	NS	22960745
OV	Ovarian serous cystadenocarcinoma	287	0.121	NS	21720365
PRAD	Prostate adenocarcinoma	333	0.318	NS	26544944
READ	Rectum adenocarcinoma	67	0.737	NS	22810696
SKCM	Skin Cutaneous Melanoma	315	0.108	NS	26091043
STAD	Stomach adenocarcinoma	277	1.85e-05	Significant	25079317
THCA	Thyroid carcinoma	391	0.00674	Significant	25417114
UCEC	Uterine Corpus Endometrial Carcinoma	232	0.0191	Significant	23636398

> Overall survival

[ TOP ]

Overall survival analysis based on expression.

Cancer	Full Name	# Patients	Hazard Ratio	P Value (Log Rank Test)	Association
BLCA	Bladder urothelial carcinoma	405	0.969	0.886	NS
BRCA	Breast invasive carcinoma	1079	1.047	0.834	NS
CESC	Cervical and endocervical cancers	291	2.047	0.0239	Shorter
COAD	Colon adenocarcinoma	439	1.271	0.384	NS
ESCA	Esophageal carcinoma	184	0.801	0.498	NS
GBM	Glioblastoma multiforme	158	1.14	0.602	NS
HNSC	Head and Neck squamous cell carcinoma	518	0.887	0.52	NS
KIRC	Kidney renal clear cell carcinoma	531	1.191	0.397	NS
KIRP	Kidney renal papillary cell carcinoma	287	0.278	0.00211	Longer
LAML	Acute Myeloid Leukemia	149	1.023	0.944	NS
LGG	Brain Lower Grade Glioma	511	0.569	0.0262	Longer
LIHC	Liver hepatocellular carcinoma	365	1.291	0.313	NS
LUAD	Lung adenocarcinoma	502	1.218	0.336	NS
LUSC	Lung squamous cell carcinoma	494	1.104	0.62	NS
OV	Ovarian serous cystadenocarcinoma	303	0.781	0.233	NS
PAAD	Pancreatic adenocarcinoma	177	0.474	0.0157	Longer
PCPG	Pheochromocytoma and Paraganglioma	179	661828164.95	0.0189	Shorter
PRAD	Prostate adenocarcinoma	497	893994834.025	0.00177	Shorter
READ	Rectum adenocarcinoma	159	1.201	0.717	NS
SARC	Sarcoma	259	0.833	0.507	NS
SKCM	Skin Cutaneous Melanoma	459	1.29	0.186	NS
STAD	Stomach adenocarcinoma	388	0.729	0.167	NS
TGCT	Testicular Germ Cell Tumors	134	2.617	0.421	NS
THCA	Thyroid carcinoma	500	1.136	0.852	NS
THYM	Thymoma	119	0.145	0.0385	Longer
UCEC	Uterine Corpus Endometrial Carcinoma	543	1.688	0.0514	NS

> Stage

[ TOP ]

Association between expresson and stage.

Cancer	Full Name	# Patients	R Value (Spearman)	P Value (Spearman)	Association
BLCA	Bladder urothelial carcinoma	406	-0.145	0.00345	Lower
BRCA	Breast invasive carcinoma	1071	-0.012	0.702	NS
CESC	Cervical and endocervical cancers	167	0.108	0.166	NS
COAD	Colon adenocarcinoma	445	-0.124	0.00909	Lower
ESCA	Esophageal carcinoma	162	-0.152	0.0529	NS
HNSC	Head and Neck squamous cell carcinoma	448	-0.028	0.561	NS
KIRC	Kidney renal clear cell carcinoma	531	-0.125	0.00404	Lower
KIRP	Kidney renal papillary cell carcinoma	260	-0.212	0.000577	Lower
LIHC	Liver hepatocellular carcinoma	347	0.091	0.09	NS
LUAD	Lung adenocarcinoma	507	0.022	0.627	NS
LUSC	Lung squamous cell carcinoma	497	0.02	0.65	NS
OV	Ovarian serous cystadenocarcinoma	302	-0.081	0.159	NS
PAAD	Pancreatic adenocarcinoma	176	-0.132	0.0809	NS
READ	Rectum adenocarcinoma	156	-0.206	0.00996	Lower
SKCM	Skin Cutaneous Melanoma	410	0.022	0.65	NS
STAD	Stomach adenocarcinoma	392	-0.039	0.436	NS
TGCT	Testicular Germ Cell Tumors	81	-0.02	0.857	NS
THCA	Thyroid carcinoma	499	0.001	0.988	NS
UCEC	Uterine Corpus Endometrial Carcinoma	501	-0.051	0.257	NS

> Grade

[ TOP ]

Association between expresson and grade.

Cancer	Full Name	# Patients	R Value (Spearman)	P Value (Spearman)	Association
CESC	Cervical and endocervical cancers	272	-0.013	0.837	NS
HNSC	Head and Neck squamous cell carcinoma	498	-0.178	6.7e-05	Lower
KIRC	Kidney renal clear cell carcinoma	525	-0.177	4.71e-05	Lower
LGG	Brain Lower Grade Glioma	514	-0.121	0.00599	Lower
LIHC	Liver hepatocellular carcinoma	366	-0.01	0.853	NS
OV	Ovarian serous cystadenocarcinoma	296	-0.033	0.571	NS
PAAD	Pancreatic adenocarcinoma	176	-0.185	0.0138	Lower
STAD	Stomach adenocarcinoma	406	-0.056	0.261	NS
UCEC	Uterine Corpus Endometrial Carcinoma	534	0.157	0.000277	Higher

Summary
Symbol	MBD1
Name	methyl-CpG binding domain protein 1
Aliases	CXXC3; RFT; CXXC-type zinc finger protein 3; methyl-CpG binding domain protein 1 isoform PCM1; protein conta ......
Location	18q21.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Targets inferred by reverse engineering method > Targets identified by ChIP-seq data

> Targets inferred by reverse engineering method [ TOP ]

> Targets identified by ChIP-seq data [ TOP ]

Summary
Symbol	MBD1
Name	methyl-CpG binding domain protein 1
Aliases	CXXC3; RFT; CXXC-type zinc finger protein 3; methyl-CpG binding domain protein 1 isoform PCM1; protein conta ......
Location	18q21.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Drugs from DrugBank database

> Drugs from DrugBank database [ TOP ]
There is no record for MBD1.

Summary
Symbol	MBD1
Name	methyl-CpG binding domain protein 1
Aliases	CXXC3; RFT; CXXC-type zinc finger protein 3; methyl-CpG binding domain protein 1 isoform PCM1; protein conta ......
Location	18q21.1
External Links	HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases	ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content	> Protein-Protein Interaction Network > miRNA Regulatory Relationship > Interactions from Text Mining

> Protein-Protein Interaction Network [ TOP ]

> miRNA Regulatory Relationship [ TOP ]

> Interactions from Text Mining

[ TOP ]

PMID	Cancer	Hierarchy	Gene	Relation to CR	Evidence
26980696	Pancreatic Carcinoma	partner	c-myc	Collaboration	c-myc plays a key role in MBD1 mediated epigenetic silencing of KEAP1.
26980696	Pancreatic Carcinoma	downstream	KEPA1	negative regulation	MBD1 can induce antioxidant response in pancreatic cancer through down-regulation of KEAP1.
23331011	Pancreatic Carcinoma	partner	Twist; SIRT1	Binding	Mechanistically, MBD1 is associated with Twist and NAD-dependent deacetylase sirtuin-1 (SIRT1), thereby forming the Twist-MBD1-SIRT1 complex on the CDH1 promoter, which resulted in reduced E-cadherin transcription activity and increased cell EMT ability.
23331011	Pancreatic Carcinoma	downstream	E-cadherin	Negative regulation	Mechanistically, MBD1 is associated with Twist and NAD-dependent deacetylase sirtuin-1 (SIRT1), thereby forming the Twist-MBD1-SIRT1 complex on the CDH1 promoter, which resulted in reduced E-cadherin transcription activity and increased cell EMT ability.
28473981	Colorectal Carcinoma	partner	SP1	Binding	Further enrichment analysis of transcription factor binding site identified that SP1 binding site had higher enrichment and could bind withMBD1. In conclusion,MBD1may be a tumor suppressor gene in advanced CRC and affect the development and metastasis of CRC by regulating 8 tumor suppressor genes through binding with SP1.