Browse PHF6 in pancancer

Summary
SymbolPHF6
NamePHD finger protein 6
Aliases KIAA1823; MGC14797; CENP-31; centromere protein 31; BFLS; BORJ; Borjeson-Forssman-Lehmann syndrome; PHD-like ......
LocationXq26.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content > Domain, Function and Classification
> Gene Ontology
> KEGG and Reactome Pathway
> Domain, Function and Classification
 
Domain -
Function

Transcriptional regulator that associates with ribosomal RNA promoters and suppresses ribosomal RNA (rRNA) transcription.

Classification
Class Modification Substrate Product PubMed
# # # # #
> Gene Ontology
 
Biological Process -
Molecular Function GO:0015631 tubulin binding
GO:0042393 histone binding
GO:0042826 histone deacetylase binding
GO:0043021 ribonucleoprotein complex binding
GO:0051219 phosphoprotein binding
GO:0097110 scaffold protein binding
Cellular Component GO:0000775 chromosome, centromeric region
GO:0000776 kinetochore
GO:0000777 condensed chromosome kinetochore
GO:0000779 condensed chromosome, centromeric region
GO:0000793 condensed chromosome
GO:0098687 chromosomal region
> KEGG and Reactome Pathway
 
KEGG -
Reactome -
Summary
SymbolPHF6
NamePHD finger protein 6
Aliases KIAA1823; MGC14797; CENP-31; centromere protein 31; BFLS; BORJ; Borjeson-Forssman-Lehmann syndrome; PHD-like ......
LocationXq26.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content > Mutation landscape in primary tumor tissue from TCGA
> Mutation landscape in cancer cell line from CCLE
> All mutations from COSMIC database V81
> Variations from text mining
> The Cancer Genome Atlas (TCGA)
 
> Cancer Cell Line Encyclopedia (CCLE)
 
There is no record.
> Catalogue of Somatic Mutations in Cancer (COSMIC)
 
COSMIC ID CDS change AA change Mutation Type Anatomical Site
COSM5880077c.879_880insATp.K295fs*1Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM144700c.?p.D333fs*?UnknownHaematopoietic_and_lymphoid_tissue
COSM5752076c.721_722insCAp.K241fs*39Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5752502c.223delAp.R76fs*5Deletion - FrameshiftBreast
COSM5880060c.374+2T>Cp.?UnknownHaematopoietic_and_lymphoid_tissue
COSM144669c.898A>Gp.T300ASubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM4385774c.308_309insAp.Y103fs*1Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM1465737c.537C>Tp.T179TSubstitution - coding silentLarge_intestine
COSM255184c.673C>Tp.R225*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM327311c.882A>Gp.I294MSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM1220385c.351G>Tp.E117DSubstitution - MissenseLarge_intestine
COSM5546652c.97_113>Gp.I33fs*43Complex - frameshiftHaematopoietic_and_lymphoid_tissue
COSM4914860c.395A>Gp.K132RSubstitution - MissenseLiver
COSM5751890c.881T>Cp.I294TSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM4774973c.986A>Cp.H329PSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5751649c.302_303insTp.R101fs*11Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM256008c.1_1098del1098p.0?Whole gene deletionHaematopoietic_and_lymphoid_tissue
COSM256008c.1_1098del1098p.0?Whole gene deletionHaematopoietic_and_lymphoid_tissue
COSM144709c.?p.C215FSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM1115438c.897G>Tp.K299NSubstitution - MissenseEndometrium
COSM144707c.?p.S158fs*?UnknownHaematopoietic_and_lymphoid_tissue
COSM255184c.673C>Tp.R225*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM5546654c.341_342insGAGGTCCAp.I115fs*31Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM158743c.860G>Tp.G287VSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM422226c.202G>Tp.E68*Substitution - NonsenseUrinary_tract
COSM5880063c.435delTp.F146fs*72Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5991598c.225_226delAAp.G77fs*18Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM1235023c.554_580>CCCGGGGAp.H185fs*27Complex - frameshiftHaematopoietic_and_lymphoid_tissue
COSM5880303c.479_480insAp.K161fs*11Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM255183c.736_737insTTp.S246fs*34Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM327311c.882A>Gp.I294MSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM306061c.821G>Ap.R274QSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM4154847c.720T>Gp.Y240*Substitution - NonsenseKidney
COSM144567c.820C>Tp.R274*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM1115431c.5C>Gp.S2*Substitution - NonsenseEndometrium
COSM5944860c.187_188insAAGCp.G63fs*7Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM144712c.?p.C280YSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM306061c.821G>Ap.R274QSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM4923692c.675A>Gp.R225RSubstitution - coding silentLiver
COSM255188c.27_28insAp.G10fs*12Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM255182c.653_667>13p.G218fs*3Complex - frameshiftHaematopoietic_and_lymphoid_tissue
COSM5945630c.969-2A>Gp.?UnknownHaematopoietic_and_lymphoid_tissue
COSM306061c.821G>Ap.R274QSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM144575c.76_95>TTGGp.K26fs*50Complex - frameshiftHaematopoietic_and_lymphoid_tissue
COSM3719014c.866C>Ap.T289NSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM1159590c.2T>Ap.M1KSubstitution - MissensePancreas
COSM144633c.?p.R335fs*?UnknownHaematopoietic_and_lymphoid_tissue
COSM5944872c.788_789insCCGTCp.D264fs*17Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5880066c.476_480delAAAAGp.K161fs*9Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM4385506c.674G>Ap.R225QSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM69277c.730-1G>Cp.?UnknownOvary
COSM158743c.860G>Tp.G287VSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM256008c.1_1098del1098p.0?Whole gene deletionHaematopoietic_and_lymphoid_tissue
COSM5945587c.487C>Tp.R163CSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5546648c.716A>Gp.H239RSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5944863c.395_396insGAAAACTp.A135fs*5Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5904086c.307T>Ap.Y103NSubstitution - MissenseSkin
COSM4606362c.?_?insGGCAp.N23fsInsertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5751973c.375-1G>AGp.?UnknownHaematopoietic_and_lymphoid_tissue
COSM144631c.?p.H302YSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5945584c.375-2A>Tp.?UnknownHaematopoietic_and_lymphoid_tissue
COSM3405981c.943G>Cp.E315QSubstitution - MissenseCentral_nervous_system
COSM4606367c.385C>Tp.R129*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM5945575c.241-1G>Ap.?UnknownHaematopoietic_and_lymphoid_tissue
COSM4106766c.512A>Tp.N171ISubstitution - MissenseStomach
COSM5945590c.585+5G>Ap.?UnknownHaematopoietic_and_lymphoid_tissue
COSM1756397c.956G>Tp.R319LSubstitution - MissenseUrinary_tract
COSM5427493c.785A>Tp.D262VSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM3558101c.888C>Tp.A296ASubstitution - coding silentSkin
COSM4775141c.93_94insCp.L32fs*4Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5752028c.986_987insGp.H329fs*2Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM158731c.725G>Ap.C242YSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM144567c.820C>Tp.R274*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM4385554c.643T>Cp.C215RSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM144715c.?p.Y303*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM144573c.986A>Gp.H329RSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5546651c.384C>Gp.C128WSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5752502c.223delAp.R76fs*5Deletion - FrameshiftBreast
COSM5880075c.834G>Ap.M278ISubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM1319506c.636_637insGGATAp.F214fs*1Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM327313c.346C>Tp.R116*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM5751599c.76_77insGTATGGAGp.K26fs*10Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5880309c.905A>Cp.H302PSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5427493c.785A>Tp.D262VSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM4606366c.?_?insCCp.G213fs*?Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM144567c.820C>Tp.R274*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM5880054c.79_80insAp.C28fs*8Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM306061c.821G>Ap.R274QSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM1115434c.415G>Ap.E139KSubstitution - MissenseEndometrium
COSM5944854c.75_76insAAGGp.C28fs*9Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM144626c.955C>Tp.R319*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM5880311c.94_94C>GCCTAp.L32fs*5Complex - frameshiftHaematopoietic_and_lymphoid_tissue
COSM4168277c.941T>Ap.I314NSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM6008821c.93_94delACp.L31fs*4Deletion - FrameshiftProstate
COSM144628c.986A>Tp.H329LSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM4775025c.789_790insGCp.D264fs*16Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM1115432c.256C>Tp.H86YSubstitution - MissenseEndometrium
COSM1235025c.461_462delCAp.S154fs*3Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM158731c.725G>Ap.C242YSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5880057c.128_129insTp.K44fs*1Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM255184c.673C>Tp.R225*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM144703c.?p.C28fs*?UnknownHaematopoietic_and_lymphoid_tissue
COSM4385492c.130A>Tp.K44*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM4606374c.890G>Ap.C297YSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM144626c.955C>Tp.R319*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM1194694c.70A>Gp.R24GSubstitution - MissenseLung
COSM5752056c.295_296insAp.C99fs*1Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM144626c.955C>Tp.R319*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM327313c.346C>Tp.R116*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM327313c.346C>Tp.R116*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM3357385c.374+1G>Ap.?UnknownHaematopoietic_and_lymphoid_tissue
COSM1724607c.585+6_585+7insAp.?UnknownSkin
COSM327313c.346C>Tp.R116*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM144626c.955C>Tp.R319*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM144570c.903C>Ap.Y301*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM144697c.?p.K235*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM5751375c.125_126insCCp.H43fs*39Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM4002259c.585+1G>Ap.?UnknownHaematopoietic_and_lymphoid_tissue
COSM5546647c.222_224TAA>CCCCp.K75fs*21Complex - frameshiftHaematopoietic_and_lymphoid_tissue
COSM4172512c.?p.A41VSubstitution - MissenseSkin
COSM144568c.823G>Ap.G275RSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5366922c.978T>Cp.C326CSubstitution - coding silentLarge_intestine
COSM4994825c.619G>Tp.D207YSubstitution - MissenseLarge_intestine
COSM1235291c.409_418del10p.N137fs*3Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM1133045c.?p.?UnknownHaematopoietic_and_lymphoid_tissue
COSM144708c.?p.C215YSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM144567c.820C>Tp.R274*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM219084c.?p.K44ESubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM3357388c.418+2T>Cp.?UnknownHaematopoietic_and_lymphoid_tissue
COSM4385489c.92T>Gp.L31*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM3973273c.410A>Gp.N137SSubstitution - MissenseCentral_nervous_system
COSM4606367c.385C>Tp.R129*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM5751236c.821G>AGp.R274fs*20Complex - frameshiftHaematopoietic_and_lymphoid_tissue
COSM5945618c.824G>Tp.G275VSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM144567c.820C>Tp.R274*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM3372072c.277G>Tp.G93CSubstitution - MissenseThyroid
COSM4385518c.941T>Cp.I314TSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM306075c.374+1G>Tp.?UnknownHaematopoietic_and_lymphoid_tissue
COSM255185c.267_268insTTAGGACCp.A90fs*10Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM144574c.779_780ins11p.D262fs*21Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM255190c.968+2_968+5delTAAGp.?UnknownHaematopoietic_and_lymphoid_tissue
COSM5945593c.586-2A>Gp.?UnknownHaematopoietic_and_lymphoid_tissue
COSM305985c.730-1G>Tp.?UnknownHaematopoietic_and_lymphoid_tissue
COSM305985c.730-1G>Tp.?UnknownHaematopoietic_and_lymphoid_tissue
COSM3747319c.313T>Cp.Y105HSubstitution - MissenseLiver
COSM4606372c.?_?insGp.F263fsInsertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM1319510c.415G>Tp.E139*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM256008c.1_1098del1098p.0?Whole gene deletionHaematopoietic_and_lymphoid_tissue
COSM1636387c.1088A>Gp.N363SSubstitution - MissenseLiver
COSM5945575c.241-1G>Ap.?UnknownHaematopoietic_and_lymphoid_tissue
COSM5752669c.1042G>Tp.G348*Substitution - NonsenseBreast
COSM4774987c.407_408insTp.N137fs*1Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5945628c.903C>Gp.Y301*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM3357385c.374+1G>Ap.?UnknownHaematopoietic_and_lymphoid_tissue
COSM4385483c.3G>Cp.M1ISubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5944857c.127_128insGp.H43fs*2Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM255184c.673C>Tp.R225*Substitution - NonsenseLiver
COSM327313c.346C>Tp.R116*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM1262069c.378C>Gp.V126VSubstitution - coding silentOesophagus
COSM5880069c.639_640insCCp.F214fs*5Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM4606370c.?_?insTp.C215fs*?Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM306061c.821G>Ap.R274QSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM256008c.1_1098del1098p.0?Whole gene deletionHaematopoietic_and_lymphoid_tissue
COSM144695c.?p.F172fs*?UnknownHaematopoietic_and_lymphoid_tissue
COSM4775910c.91_101del11p.L31fs*1Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM144568c.823G>Ap.G275RSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM144705c.?p.T98fs*?UnknownHaematopoietic_and_lymphoid_tissue
COSM4408226c.17A>Cp.E6ASubstitution - MissensePancreas
COSM144567c.820C>Tp.R274*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM327313c.346C>Tp.R116*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM4385509c.719A>Gp.Y240CSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5427493c.785A>Tp.D262VSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM1319508c.586-1G>Tp.?UnknownHaematopoietic_and_lymphoid_tissue
COSM4170005c.868A>Tp.I290FSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM4168272c.847T>Ap.C283SSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM4606364c.?_?ins11p.C242fs*?Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM4168269c.806T>Cp.L269PSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM255187c.83_101>ATp.C28fs*2Complex - frameshiftHaematopoietic_and_lymphoid_tissue
COSM5945607c.725G>Tp.C242FSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5945610c.729G>Ap.M243ISubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5944866c.585+4_585+5insAGTAAp.?UnknownHaematopoietic_and_lymphoid_tissue
COSM144570c.903C>Ap.Y301*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM256008c.1_1098del1098p.0?Whole gene deletionHaematopoietic_and_lymphoid_tissue
COSM5991599c.904_904delCp.H302fs*49Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM3363819c.638G>Tp.G213VSubstitution - MissenseKidney
COSM5944469c.70_71delAGp.D25fs*10Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5095008c.677G>Ap.G226ESubstitution - MissenseThymus
COSM1235292c.634_635delTGp.C212fs*11Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5944851c.58_59insTp.C20fs*2Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM1319512c.65_66insAp.N23fs*2Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5944869c.591_592insAGGTCTCp.P200fs*9Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM144629c.?p.R274*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM144698c.?p.A41fs*?UnknownHaematopoietic_and_lymphoid_tissue
COSM255181c.90_91insCCCGp.L31fs*6Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM144634c.?p.C20fs*?UnknownHaematopoietic_and_lymphoid_tissue
COSM144569c.835_835delAp.K279fs*16Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM2726751c.506A>Cp.K169TSubstitution - MissenseLarge_intestine
COSM5880302c.631A>Tp.K211*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM1756397c.956G>Tp.R319LSubstitution - MissenseUrinary_tract
COSM5546650c.839_840ins13p.C280fs*1Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM144567c.820C>Tp.R274*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM755295c.742G>Tp.G248CSubstitution - MissenseLung
COSM5762915c.661G>Tp.E221*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM6005414c.210C>Tp.V70VSubstitution - coding silentProstate
COSM211020c.871G>Tp.G291*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM144709c.?p.C215FSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM255188c.27_28insAp.G10fs*12Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5752669c.1042G>Tp.G348*Substitution - NonsenseBreast
COSM1262067c.570G>Tp.M190ISubstitution - MissenseOesophagus
COSM4385771c.69_70insAp.R24fs*12Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM144567c.820C>Tp.R274*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM1235026c.834+1G>Ap.?UnknownHaematopoietic_and_lymphoid_tissue
COSM5945596c.637G>Ap.G213RSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM2726745c.414C>Tp.S138SSubstitution - coding silentUpper_aerodigestive_tract
COSM2726745c.414C>Tp.S138SSubstitution - coding silentUpper_aerodigestive_tract
COSM306075c.374+1G>Tp.?UnknownHaematopoietic_and_lymphoid_tissue
COSM1315227c.137+2G>Ap.?UnknownUrinary_tract
COSM5752094c.780_789del10p.F260fs*16Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM1315229c.790G>Cp.D264HSubstitution - MissenseUrinary_tract
COSM4606368c.?_?insGGCCCp.Y103fs*?Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5991601c.241_374del134p.M81fs*12Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM3558103c.903C>Tp.Y301YSubstitution - coding silentSkin
COSM4606367c.385C>Tp.R129*Substitution - NonsenseKidney
COSM306061c.821G>Ap.R274QSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5751934c.79_80insTp.E27fs*9Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5751501c.673_674insTp.R225fs*8Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM4606373c.(787_789)T>Cp.F263LSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM1319510c.415G>Tp.E139*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM5751283c.820_821insTp.R274fs*20Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5950134c.948T>Gp.N316KSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM255184c.673C>Tp.R225*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM1235283c.978T>Gp.C326WSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5880304c.517A>Tp.K173*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM4168250c.22_23insAp.G10fs*12Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM1115436c.587G>Ap.R196KSubstitution - MissenseEndometrium
COSM4606367c.385C>Tp.R129*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM144573c.986A>Gp.H329RSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5880308c.957_958insGTp.G320fs*32Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM4385498c.469delAp.S158fs*60Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM2726749c.457C>Tp.P153SSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM144629c.?p.R274*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM755296c.187G>Tp.G63CSubstitution - MissenseLung
COSM5944472c.347_348delGAp.K118fs*19Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM4385518c.941T>Cp.I314TSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5991600c.434_439GTTTTA>TCAGTTCp.S145fs*4Complex - frameshiftHaematopoietic_and_lymphoid_tissue
COSM144630c.?p.R342*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM5751755c.28_29insAp.G10fs*12Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM144635c.?p.N171fs*?UnknownHaematopoietic_and_lymphoid_tissue
COSM144626c.955C>Tp.R319*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM5945604c.725G>Cp.C242SSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM1115433c.396G>Tp.K132NSubstitution - MissenseEndometrium
COSM5880312c.134_134G>CCp.C45fs*14Complex - frameshiftHaematopoietic_and_lymphoid_tissue
COSM5945623c.853C>Tp.Q285*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM4606369c.?_?insCAp.N147fs*?Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM144567c.820C>Tp.R274*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM5546653c.128_130ATA>TGGGTTCp.H43fs*17Complex - frameshiftHaematopoietic_and_lymphoid_tissue
COSM327313c.346C>Tp.R116*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM1235290c.404C>Tp.A135VSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM158731c.725G>Ap.C242YSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM4168259c.261T>Ap.C87*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM1490507c.421G>Ap.D141NSubstitution - MissenseBreast
COSM4775145c.340_341insAp.I115fs*23Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM4385516c.865A>Gp.T289ASubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM327313c.346C>Tp.R116*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM5945572c.68A>Gp.N23SSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM306061c.821G>Ap.R274QSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM144708c.?p.C215YSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM456777c.347G>Ap.R116QSubstitution - MissenseEndometrium
COSM4168279c.953delCp.S318fs*33Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5546655c.442G>Tp.E148*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM144701c.?p.R225*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM256008c.1_1098del1098p.0?Whole gene deletionHaematopoietic_and_lymphoid_tissue
COSM144567c.820C>Tp.R274*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM306061c.821G>Ap.R274QSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM144626c.955C>Tp.R319*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM144626c.955C>Tp.R319*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM255186c.902_903insAp.Y301fs*1Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5945626c.877G>Ap.E293KSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5546648c.716A>Gp.H239RSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM456778c.982A>Tp.N328YSubstitution - MissenseBreast
COSM5546649c.604A>Tp.R202*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM4168274c.874T>Cp.C292RSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM256007c.?p.H136fs*?UnknownHaematopoietic_and_lymphoid_tissue
COSM144568c.823G>Ap.G275RSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM144563c.1024C>Tp.R342*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM5751501c.673_674insTp.R225fs*8Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM1115437c.786_787insTp.D264fs*1Insertion - FrameshiftEndometrium
COSM4168256c.129T>Ap.H43QSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM144564c.289A>Tp.K97*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM4168253c.128_129insGAGTCp.H43fs*40Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5880306c.586_587insAp.R196fs*3Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM4606371c.?_?insATCCTp.S246fs*?Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM5880307c.971T>Cp.L324PSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5945581c.323C>Ap.A108ESubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5945578c.322G>Ap.A108TSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM256008c.1_1098del1098p.0?Whole gene deletionHaematopoietic_and_lymphoid_tissue
COSM137286c.811G>Ap.E271KSubstitution - MissenseSkin
COSM327313c.346C>Tp.R116*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM1115439c.954A>Gp.S318SSubstitution - coding silentEndometrium
COSM144714c.?p.R257*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM327314c.916G>Tp.G306*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM5702604c.119C>Ap.A40ESubstitution - MissenseAutonomic_ganglia
COSM4774967c.375-1G>Ap.?UnknownHaematopoietic_and_lymphoid_tissue
COSM144565c.525_526delGTp.S176fs*13Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM144572c.973T>Cp.Y325HSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM4606365c.737C>Ap.S246YSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM255218c.123_124insAGGCAp.H42fs*41Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM4385495c.418G>Ap.A140TSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5945621c.834+2T>Ap.?UnknownHaematopoietic_and_lymphoid_tissue
COSM4168281c.968+1_968+2delGTp.?UnknownHaematopoietic_and_lymphoid_tissue
COSM144629c.?p.R274*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM4385501c.596C>Gp.S199CSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM255184c.673C>Tp.R225*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM327312c.631A>Gp.K211ESubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM1115431c.5C>Gp.S2*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM1636387c.1088A>Gp.N363SSubstitution - MissenseLiver
COSM255189c.968+1G>Ap.?UnknownHaematopoietic_and_lymphoid_tissue
COSM144627c.600_600delAp.H201fs*17Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM4606367c.385C>Tp.R129*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM144626c.955C>Tp.R319*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM144694c.?p.R116*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM4775163c.66_69delAAATp.N23fs*9Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM144711c.?p.A311PSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM487987c.356C>Ap.P119HSubstitution - MissenseKidney
COSM456777c.347G>Ap.R116QSubstitution - MissenseBreast
COSM487988c.875G>Cp.C292SSubstitution - MissenseKidney
COSM5752102c.729+1_729+2insACCCATGp.?UnknownHaematopoietic_and_lymphoid_tissue
COSM5880072c.711_712insTCp.A238fs*42Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM4168263c.407delAp.H136fs*7Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM158743c.860G>Tp.G287VSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM1636385c.418+8A>Gp.?UnknownLiver
COSM144702c.?p.C283RSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM4385486c.61delAp.K21fs*12Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM256006c.?p.S193fs*?UnknownHaematopoietic_and_lymphoid_tissue
COSM385771c.565G>Ap.E189KSubstitution - MissenseLung
COSM5945613c.730-2A>Gp.?UnknownHaematopoietic_and_lymphoid_tissue
COSM144696c.?p.Y303fs*?UnknownHaematopoietic_and_lymphoid_tissue
COSM306061c.821G>Ap.R274QSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM327313c.346C>Tp.R116*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM144632c.?p.A40GSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM4606374c.890G>Ap.C297YSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM144567c.820C>Tp.R274*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM5991599c.904_904delCp.H302fs*49Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM1235024c.807_808insGGCCCCTCp.Q270fs*12Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM4606367c.385C>Tp.R129*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM144626c.955C>Tp.R319*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM5945599c.709G>Ap.A237TSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5751924c.839G>Ap.C280YSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5880079c.914G>Ap.C305YSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5880079c.914G>Ap.C305YSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM144566c.808C>Tp.Q270*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM1159590c.2T>Ap.M1KSubstitution - MissensePancreas
COSM5751883c.955_956insTp.R319fs*9Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM4168279c.953delCp.S318fs*33Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM144706c.?p.Y105fs*?UnknownHaematopoietic_and_lymphoid_tissue
COSM1235026c.834+1G>Ap.?UnknownHaematopoietic_and_lymphoid_tissue
COSM306061c.821G>Ap.R274QSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM144626c.955C>Tp.R319*Substitution - NonsenseStomach
COSM144704c.?p.H43fs*?UnknownHaematopoietic_and_lymphoid_tissue
COSM5751150c.385_386insTp.R129fs*9Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM4169632c.?p.A296fs*?UnknownHaematopoietic_and_lymphoid_tissue
COSM4761565c.892G>Ap.V298ISubstitution - MissenseStomach
COSM4606361c.?p.?UnknownHaematopoietic_and_lymphoid_tissue
COSM5751236c.821G>AGp.R274fs*20Complex - frameshiftHaematopoietic_and_lymphoid_tissue
COSM3747319c.313T>Cp.Y105HSubstitution - MissenseBreast
COSM1133045c.?p.?UnknownHaematopoietic_and_lymphoid_tissue
COSM4606363c.?p.?UnknownHaematopoietic_and_lymphoid_tissue
COSM1115435c.567A>Tp.E189DSubstitution - MissenseEndometrium
COSM327313c.346C>Tp.R116*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM3558099c.491A>Gp.K164RSubstitution - MissenseSkin
COSM144571c.933_934insTp.K312fs*1Insertion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM4385518c.941T>Cp.I314TSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM4168266c.513delTp.F172fs*46Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
COSM158731c.725G>Ap.C242YSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM4385514c.833T>Ap.M278KSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5751440c.941T>ATp.I314fs*2Complex - frameshiftHaematopoietic_and_lymphoid_tissue
COSM4774973c.986A>Cp.H329PSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM158743c.860G>Tp.G287VSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM144693c.?p.G122*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM144694c.?p.R116*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM327313c.346C>Tp.R116*Substitution - NonsenseHaematopoietic_and_lymphoid_tissue
COSM3719601c.1018G>Ap.E340KSubstitution - MissenseHaematopoietic_and_lymphoid_tissue
COSM5880305c.731_732delTGp.L244fs*20Deletion - FrameshiftHaematopoietic_and_lymphoid_tissue
> Text Mining based Variations
 
PMID Variation Cancer Evidence
27698851mutationT Acute Lymphoblastic LeukemiaA total of 4 novel DNM2 mutations were identified in adult T-ALL patients, with a mutation rate of 9.5%, and the DNM2 mutations were found to co-exist with NOTCH1 and PHD finger protein 6, and were also associated with high-risk leukemia.
26341754mutationT Acute Lymphoblastic LeukemiaMutant PHF6 was present in 13 and 20.7 % of our childhood and adult cohorts, respectively, while PTEN mutations were noted in 11.1 % of the pediatric patients.
25595890mutationT Acute Lymphoblastic LeukemiaMutation frequencies of FBXW7 (10%), WT1 (10%), JAK3 (12%), PHF6 (11%), and BCL11B (10%) were in line with previous reports.
23354995mutationT Acute Lymphoblastic LeukemiaEight patients (28 %; six males and two females) had PHF6 mutations including four novel mutations.
23341344mutationT Acute Lymphoblastic LeukemiaNOTCH1 was the most frequently mutated gene with a 71.1% frequency followed by FBXW7 (18.9%), PHF6 (39.5%), DNMT3A (17.8%), RUNX1 (15.5%), PTEN (10.0%), CDKN2A (4.4%), FLT3-ITD (2.2%), and FLT3-TKD (1.1%).
23114116mutationT Acute Lymphoblastic LeukemiaPHF6 and NOTCH1 gene mutations were found in 4 and 5 out of 6 SET-NUP214 positive T-ALL patients, respectively.
22417203mutationAcute Myeloid LeukemiaWe found that internal tandem duplication in FLT3 (FLT3-ITD), partial tandem duplication in MLL (MLL-PTD), and mutations in ASXL1 and PHF6 were associated with reduced overall survival (P=0.001 for FLT3-ITD, P=0.009 for MLL-PTD, P=0.05 for ASXL1, and P=0.006 for PHF6); CEBPA and IDH2 mutations were associated with improved overall survival (P=0.05 for CEBPA and P=0.01 for IDH2).
21880637mutation; copy number lossT Acute Lymphoblastic LeukemiaPHF6 mutations were identified in 11/59 (18.6%) adult and 2/37 (5.4%) pediatric cases of T-cell acute lymphoblastic leukemia, these incidences being significantly lower than those recently reported. PHF6 deletions were detected in 2/79 (2.5%) patients analyzed.
21736506mutationT Acute Lymphoblastic Leukemia; Acute Myeloid LeukemiaIn the hematologic malignancies, there were 11 PHF6 mutations that were detected not only in T-ALL (34.7%) (five adult and three childhood T-ALL), but also in two AML (1.9%) (one acute monocytic leukemia and one AML minimally differentiated).
21030981mutation (loss of function)T Acute Lymphoblastic Leukemia; Acute Myeloid LeukemiaLoss of function mutations and deletions encompassing the plant homeodomain finger 6 (PHF6) gene are present in about 20% of T-cell acute lymphoblastic leukemias (ALLs). Genetic lesions in PHF6 found in AMLs are frameshift and nonsense mutations distributed through the gene or point mutations involving the second plant homeodomain (PHD)-like domain of the protein.
20228800mutation (loss of function)T Acute Lymphoblastic LeukemiaIn this study, we report the identification of inactivating mutations and deletions in the X-linked plant homeodomain finger 6 (PHF6) gene in 16% of pediatric and 38% of adult primary T-ALL samples.
24674452loss of expression (mutation)Acute Myeloid LeukemiaMoreover, a recurrent microdeletion was detected in Xq26.3 (n=2), causing loss of PHF6 expression, a potential tumor suppressor gene, and the miR-424, which is involved in the development of acute myeloid leukemia.
27137476mutationT Acute Lymphoblastic LeukemiaRUNX1 mutations were found in 245 of 2439 (10%) patients; were almost mutually exclusive of AML with recurrent genetic abnormalities; and they co-occurred with a complex pattern of gene mutations, frequently involving mutations in epigenetic modifiers (ASXL1, IDH2, KMT2A, EZH2), components of the spliceosome complex (SRSF2, SF3B1) and STAG2, PHF6, BCOR.
Summary
SymbolPHF6
NamePHD finger protein 6
Aliases KIAA1823; MGC14797; CENP-31; centromere protein 31; BFLS; BORJ; Borjeson-Forssman-Lehmann syndrome; PHD-like ......
LocationXq26.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content > Post-translational modification (PTM)
> Post-translational modification (PTM)
 
 Filter By:
Uniprot ID Position Amino Acid Description Upstream Enzyme Affected By Mutation Amino Acid Sequence Variant
Q8IWS0138SPhosphoserine-NoNone detected
Q8IWS0145SPhosphoserine-NoNone detected
Q8IWS0155SPhosphoserine-NoNone detected
Q8IWS0183SPhosphoserine-NoNone detected
Q8IWS0199SPhosphoserine-NoNone detected
Q8IWS0358TPhosphothreonine-NoNone detected
Summary
SymbolPHF6
NamePHD finger protein 6
Aliases KIAA1823; MGC14797; CENP-31; centromere protein 31; BFLS; BORJ; Borjeson-Forssman-Lehmann syndrome; PHD-like ......
LocationXq26.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content > Expression analysis in primary tumor tissue from TCGA
> Expression level in cancer cell line from CCLE
> Expression level in human normal tissue from HPA
> Text mining based expression change
> The Cancer Genome Atlas (TCGA)
 


  Differential expression analysis for cancers with more than 10 normal samples
Cancer Full Name # N # T Median (N) Median (T) LogFC Adj. P Status
BLCABladder urothelial carcinoma194084.3865.0630.6110.000346Over
BRCABreast invasive carcinoma11211004.9785.3580.4171.98e-10NS
CESCCervical and endocervical cancers33064.4985.444NANANA
COADColon adenocarcinoma414594.5965.360.6714.1e-08Over
ESCAEsophageal carcinoma111854.6145.4330.8031.94e-05Over
GBMGlioblastoma multiforme51664.7745.365NANANA
HNSCHead and Neck squamous cell carcinoma445224.534.8140.3640.000329NS
KIRCKidney renal clear cell carcinoma725345.1814.768-0.5551.26e-17NS
KIRPKidney renal papillary cell carcinoma322914.734.592-0.2240.0448NS
LAMLAcute Myeloid Leukemia0173NA6.022NANANA
LGGBrain Lower Grade Glioma0530NA5.74NANANA
LIHCLiver hepatocellular carcinoma503733.0583.5220.5031.4e-06NS
LUADLung adenocarcinoma595174.3835.020.6232.05e-15Over
LUSCLung squamous cell carcinoma515014.2965.3941.0525.77e-33Over
OVOvarian serous cystadenocarcinoma0307NA5.268NANANA
PAADPancreatic adenocarcinoma41794.5684.56NANANA
PCPGPheochromocytoma and Paraganglioma31845.4594.931NANANA
PRADProstate adenocarcinoma524984.9194.943-0.0260.797NS
READRectum adenocarcinoma101674.6685.3650.6320.0264Over
SARCSarcoma22633.8254.587NANANA
SKCMSkin Cutaneous Melanoma14725.5885.059NANANA
STADStomach adenocarcinoma354154.1385.0980.8961.91e-13Over
TGCTTesticular Germ Cell Tumors0156NA4.802NANANA
THCAThyroid carcinoma595095.1215.0910.0110.858NS
THYMThymoma21205.3445.338NANANA
UCECUterine Corpus Endometrial Carcinoma355464.6715.1520.2390.115NS
> Cancer Cell Line Encyclopedia (CCLE)
 

There is no record.
> The Human Protein Atlas (HPA)
 


Tissue Expression Level (TPM)
Adipose tissue 7.6
Adrenal gland 23.5
Appendix 19.4
Bone marrow 5.3
Breast 13.2
Cerebral cortex 19.5
Cervix, uterine 12.6
Colon 9.1
Duodenum 9.1
Endometrium 16.2
Epididymis 39.2
Esophagus 9
Fallopian tube 12.7
Gallbladder 10.5
Heart muscle 4.3
Kidney 11.1
Liver 3.9
Lung 10.1
Lymph node 30
Ovary 40.7
Pancreas 1.9
Parathyroid gland 41.2
Placenta 13.2
Prostate 14.5
Rectum 11.6
Salivary gland 5.5
Seminal vesicle 15.4
Skeletal muscle 1.7
Skin 9.9
Small intestine 9.9
Smooth muscle 11.9
Spleen 18.6
Stomach 8.6
Testis 17.2
Thyroid gland 21.8
Tonsil 28.2
Urinary bladder 12.2
> Text Mining based Expression
 
PMID Expression Cancer Evidence
26561469aberrant expressionBreast Carcinoma; Colorectal Carcinoma; Esophageal NeoplasmThe results demonstrated that although PHF6 has been previously known as a tumor suppressor gene, it was remarkably overexpressed in many cancer types such as breast and colorectal cancers. Notably, PHF6 was under-expressed in a few types of cancer, including esophageal tumors.
24919120overexpressionGlioblastomaAnalysis of PHF6 expression showed significant upregulation in glioblastoma as compared to normal tissue.
24674452loss of expression (mutation)Acute Myeloid LeukemiaMoreover, a recurrent microdeletion was detected in Xq26.3 (n=2), causing loss of PHF6 expression, a potential tumor suppressor gene, and the miR-424, which is involved in the development of acute myeloid leukemia.
Summary
SymbolPHF6
NamePHD finger protein 6
Aliases KIAA1823; MGC14797; CENP-31; centromere protein 31; BFLS; BORJ; Borjeson-Forssman-Lehmann syndrome; PHD-like ......
LocationXq26.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content > Somatic copy number alteration in primary tomur tissue
> The Cancer Genome Atlas (TCGA)
 


  Correlation between expression and SCNA as well as percentage of patients in different status.
Cancer Full Name # Sample R P % Loss % Neutral % Gain Status
BLCABladder urothelial carcinoma4040.342.18e-1219.664.416.1Neutral
BRCABreast invasive carcinoma10750.0910.002721767.315.6Neutral
CESCCervical and endocervical cancers2920.3251.28e-0818.861.319.9Neutral
COADColon adenocarcinoma4490.0460.3311.169.519.4Neutral
ESCAEsophageal carcinoma1830.3751.75e-0713.15333.9Gain
GBMGlioblastoma multiforme1470.0450.5921.871.46.8Neutral
HNSCHead and Neck squamous cell carcinoma5140.1977e-0611.764.224.1Neutral
KIRCKidney renal clear cell carcinoma5250.0590.1779.585.15.3Neutral
KIRPKidney renal papillary cell carcinoma288-0.2346.21e-059.75832.3Neutral
LAMLAcute Myeloid Leukemia166-0.080.3073.695.80.6Neutral
LGGBrain Lower Grade Glioma5130.0860.051114.876.48.8Neutral
LIHCLiver hepatocellular carcinoma3640.2481.63e-061762.920.1Neutral
LUADLung adenocarcinoma5120.3264.21e-149.664.625.8Neutral
LUSCLung squamous cell carcinoma4980.3044.1e-1220.957.621.5Neutral
OVOvarian serous cystadenocarcinoma3000.3258.01e-0937.32933.7Gain
PAADPancreatic adenocarcinoma1770.2010.0074510.279.710.2Neutral
PCPGPheochromocytoma and Paraganglioma162-0.10.20632.764.23.1Neutral
PRADProstate adenocarcinoma4910.0640.1595.9913.1Neutral
READRectum adenocarcinoma1640.0820.2961463.422.6Neutral
SARCSarcoma2550.2290.0002349.841.68.6Loss
SKCMSkin Cutaneous Melanoma3670.040.44525.361.313.4Neutral
STADStomach adenocarcinoma4130.3931.12e-1610.271.917.9Neutral
TGCTTesticular Germ Cell Tumors1500.1220.13819.364.716Neutral
THCAThyroid carcinoma4970.0280.5370.897.61.6Neutral
THYMThymoma1190.3150.0004913.490.85.9Neutral
UCECUterine Corpus Endometrial Carcinoma5370.0470.27513.672.414Neutral
Summary
SymbolPHF6
NamePHD finger protein 6
Aliases KIAA1823; MGC14797; CENP-31; centromere protein 31; BFLS; BORJ; Borjeson-Forssman-Lehmann syndrome; PHD-like ......
LocationXq26.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content > Methylation level in the promoter region of CR
> Methylation level in the promoter region of CR
 


  Correlation between expression and methylation as well as differential methylation analysis.
Cancer Full Name R P # N # T Delta beta (T vs N) P value (T vs N) Status
BLCABladder urothelial carcinoma-0.2378.75e-0717408-0.010.0775NS/NA
BRCABreast invasive carcinoma-0.3115.67e-2183785-0.0372.69e-25NS/NA
CESCCervical and endocervical cancers-0.2873.18e-073306NANANS/NA
COADColon adenocarcinoma-0.1460.00922192970.0030.952NS/NA
ESCAEsophageal carcinoma-0.3254.32e-069185NANANS/NA
GBMGlioblastoma multiforme-0.4020.000981164NANANS/NA
HNSCHead and Neck squamous cell carcinoma-0.2431.16e-08205220.0010.775NS/NA
KIRCKidney renal clear cell carcinoma-0.1340.0131243190.0670.00227NS/NA
KIRPKidney renal papillary cell carcinoma-0.2315.74e-05232750.2163.14e-07Increased
LAMLAcute Myeloid Leukemia-0.040.6060170NANANS/NA
LGGBrain Lower Grade Glioma-0.3613.05e-180530NANANS/NA
LIHCLiver hepatocellular carcinoma-0.1490.00245413730.0010.0152NS/NA
LUADLung adenocarcinoma-0.1826.61e-05214560.1690.551NS/NA
LUSCLung squamous cell carcinoma-0.41208370NANANS/NA
OVOvarian serous cystadenocarcinoma-0.5830.10809NANANS/NA
PAADPancreatic adenocarcinoma-0.0290.6994179NANANS/NA
PCPGPheochromocytoma and Paraganglioma-0.4031.41e-083184NANANS/NA
PRADProstate adenocarcinoma-0.1993.68e-06354980.0010.0594NS/NA
READRectum adenocarcinoma-0.2160.03299NANANS/NA
SARCSarcoma-0.1190.05430263NANANS/NA
SKCMSkin Cutaneous Melanoma-0.1650.0003171471NANANS/NA
STADStomach adenocarcinoma-0.2231.46e-050372NANANS/NA
TGCTTesticular Germ Cell Tumors-0.2330.003450156NANANS/NA
THCAThyroid carcinoma-0.0670.115505090.0270.593NS/NA
THYMThymoma-0.0350.7032120NANANS/NA
UCECUterine Corpus Endometrial Carcinoma-0.2411.55e-0734431-0.0341.19e-14NS/NA
Summary
SymbolPHF6
NamePHD finger protein 6
Aliases KIAA1823; MGC14797; CENP-31; centromere protein 31; BFLS; BORJ; Borjeson-Forssman-Lehmann syndrome; PHD-like ......
LocationXq26.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content > Primary tumor tissue from TCGA
> Normal tumor tissue from HPA
>The Cancer Genome Atlas (TCGA)
 
There is no record.
> The Human Protein Atlas (HPA)
 


Tissue Level Level Name
Adrenal gland 2 Medium
Appendix 2 Medium
Bone marrow 1 Low
Breast 2 Medium
Bronchus 2 Medium
Caudate 2 Medium
Cerebellum 3 High
Cerebral cortex 2 Medium
Cervix, uterine 3 High
Colon 2 Medium
Duodenum 2 Medium
Endometrium 1 Low
Epididymis 3 High
Esophagus 3 High
Fallopian tube 2 Medium
Gallbladder 2 Medium
Heart muscle 2 Medium
Hippocampus 2 Medium
Kidney 2 Medium
Liver 0 Not detected
Lung 2 Medium
Lymph node 2 Medium
Nasopharynx 2 Medium
Oral mucosa 2 Medium
Ovary 3 High
Pancreas 2 Medium
Parathyroid gland 0 Not detected
Placenta 2 Medium
Prostate 0 Not detected
Rectum 2 Medium
Salivary gland 2 Medium
Seminal vesicle 2 Medium
Skeletal muscle 1 Low
Skin 2 Medium
Small intestine 2 Medium
Smooth muscle 2 Medium
Soft tissue 2 Medium
Spleen 2 Medium
Stomach 2 Medium
Testis 3 High
Thyroid gland 3 High
Tonsil 3 High
Urinary bladder 2 Medium
Vagina 3 High
Summary
SymbolPHF6
NamePHD finger protein 6
Aliases KIAA1823; MGC14797; CENP-31; centromere protein 31; BFLS; BORJ; Borjeson-Forssman-Lehmann syndrome; PHD-like ......
LocationXq26.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content > Association between expresson and subtype
> Overall survival analysis based on expression
> Association between expresson and stage
> Association between expresson and grade
> Subtype
 


  Association between expresson and subtype.
Cancer Full Name # Patients P Value (Kruskal-Wallis) Association Source
BLCABladder urothelial carcinoma1280.339NS24476821
BRCABreast invasive carcinoma5211.5e-15Significant23000897
COADColon adenocarcinoma1490.399NS22810696
GBMGlioblastoma multiforme1577.82e-05Significant26824661
HNSCHead and Neck squamous cell carcinoma2790.00491Significant25631445
KIRPKidney renal papillary cell carcinoma1610.0825NS26536169
LGGBrain Lower Grade Glioma5132.22e-21Significant26824661
LUADLung adenocarcinoma2301e-04Significant25079552
LUSCLung squamous cell carcinoma1782.2e-08Significant22960745
OVOvarian serous cystadenocarcinoma2870.000275Significant21720365
PRADProstate adenocarcinoma3330.166NS26544944
READRectum adenocarcinoma670.632NS22810696
SKCMSkin Cutaneous Melanoma3150.174NS26091043
STADStomach adenocarcinoma2774.57e-10Significant25079317
THCAThyroid carcinoma3910.609NS25417114
UCECUterine Corpus Endometrial Carcinoma2320.118NS23636398
> Overall survival
 

  Overall survival analysis based on expression.
Cancer Full Name # Patients Hazard Ratio P Value (Log Rank Test) Association
BLCABladder urothelial carcinoma405 0.8270.367NS
BRCABreast invasive carcinoma1079 1.6490.027Shorter
CESCCervical and endocervical cancers291 0.8110.514NS
COADColon adenocarcinoma439 1.2030.501NS
ESCAEsophageal carcinoma184 1.6490.148NS
GBMGlioblastoma multiforme158 0.4840.00369Longer
HNSCHead and Neck squamous cell carcinoma518 1.30.198NS
KIRCKidney renal clear cell carcinoma531 0.8110.338NS
KIRPKidney renal papillary cell carcinoma287 1.9710.109NS
LAMLAcute Myeloid Leukemia149 1.1360.653NS
LGGBrain Lower Grade Glioma511 0.5650.0221Longer
LIHCLiver hepatocellular carcinoma365 1.8330.0134Shorter
LUADLung adenocarcinoma502 1.4560.0621NS
LUSCLung squamous cell carcinoma494 0.6350.0157Longer
OVOvarian serous cystadenocarcinoma303 1.0740.732NS
PAADPancreatic adenocarcinoma177 2.1640.00844Shorter
PCPGPheochromocytoma and Paraganglioma179 1697834696.5420.0762NS
PRADProstate adenocarcinoma497 1.2980.76NS
READRectum adenocarcinoma159 0.7760.721NS
SARCSarcoma259 2.2750.00659Shorter
SKCMSkin Cutaneous Melanoma459 0.6270.0197Longer
STADStomach adenocarcinoma388 0.650.0579NS
TGCTTesticular Germ Cell Tumors134 00.317NS
THCAThyroid carcinoma500 0.5850.554NS
THYMThymoma119 1.4820.665NS
UCECUterine Corpus Endometrial Carcinoma543 2.5820.00221Shorter
> Stage
 

  Association between expresson and stage.
Cancer Full Name # Patients R Value (Spearman) P Value (Spearman) Association
BLCABladder urothelial carcinoma406 -0.0590.234NS
BRCABreast invasive carcinoma1071 -0.0330.281NS
CESCCervical and endocervical cancers167 -0.0070.925NS
COADColon adenocarcinoma445 -0.0330.484NS
ESCAEsophageal carcinoma162 0.1340.0902NS
HNSCHead and Neck squamous cell carcinoma448 -0.0090.856NS
KIRCKidney renal clear cell carcinoma531 -0.0970.0249Lower
KIRPKidney renal papillary cell carcinoma260 0.1350.0301Higher
LIHCLiver hepatocellular carcinoma347 0.1630.00229Higher
LUADLung adenocarcinoma507 0.030.495NS
LUSCLung squamous cell carcinoma497 0.0570.208NS
OVOvarian serous cystadenocarcinoma302 -0.0590.304NS
PAADPancreatic adenocarcinoma176 0.0430.567NS
READRectum adenocarcinoma156 0.010.906NS
SKCMSkin Cutaneous Melanoma410 -0.060.227NS
STADStomach adenocarcinoma392 -0.0010.984NS
TGCTTesticular Germ Cell Tumors81 -0.0050.965NS
THCAThyroid carcinoma499 -0.0350.44NS
UCECUterine Corpus Endometrial Carcinoma501 0.0730.104NS
> Grade
 

  Association between expresson and grade.
Cancer Full Name # Patients R Value (Spearman) P Value (Spearman) Association
CESCCervical and endocervical cancers272 0.0180.771NS
HNSCHead and Neck squamous cell carcinoma498 0.1450.00122Higher
KIRCKidney renal clear cell carcinoma525 -0.0360.409NS
LGGBrain Lower Grade Glioma514 -0.0910.0381Lower
LIHCLiver hepatocellular carcinoma366 0.0560.286NS
OVOvarian serous cystadenocarcinoma296 -0.0570.327NS
PAADPancreatic adenocarcinoma176 0.1170.122NS
STADStomach adenocarcinoma406 -0.0780.115NS
UCECUterine Corpus Endometrial Carcinoma534 0.2012.98e-06Higher
Summary
SymbolPHF6
NamePHD finger protein 6
Aliases KIAA1823; MGC14797; CENP-31; centromere protein 31; BFLS; BORJ; Borjeson-Forssman-Lehmann syndrome; PHD-like ......
LocationXq26.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content > Targets inferred by reverse engineering method
> Targets identified by ChIP-seq data
> Targets inferred by reverse engineering method
 
> Targets identified by ChIP-seq data
 
Summary
SymbolPHF6
NamePHD finger protein 6
Aliases KIAA1823; MGC14797; CENP-31; centromere protein 31; BFLS; BORJ; Borjeson-Forssman-Lehmann syndrome; PHD-like ......
LocationXq26.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content > Drugs from DrugBank database
> Drugs from DrugBank database
 
There is no record for PHF6.
Summary
SymbolPHF6
NamePHD finger protein 6
Aliases KIAA1823; MGC14797; CENP-31; centromere protein 31; BFLS; BORJ; Borjeson-Forssman-Lehmann syndrome; PHD-like ......
LocationXq26.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Cancer Gene Databases ONGene (Oncogene) , TSGene (Tumor suppressor gene) , NCG (Network of Cancer Genes)
Content > Protein-Protein Interaction Network
> miRNA Regulatory Relationship
> Interactions from Text Mining
> Protein-Protein Interaction Network
 
> miRNA Regulatory Relationship
 
> Interactions from Text Mining
 
There is no record for PHF6.